git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
Merge branch 'develop' into features/JAL-2295setChimeraAttributes
[jalview.git]
/
src
/
2016-11-23
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-11-22
tcofoegbu
Merge branch 'bug/JAL-2277_refactorPrintUnwrapped'...
tree
|
commitdiff
2016-11-22
gmungoc
JAL-2337 fix: only adjust once for scroll offset
bug/JAL-2277_refactorPrintUnwrapped
tree
|
commitdiff
2016-11-22
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
|
commitdiff
2016-11-22
tcofoegbu
JAL-2322 added runnable interface to HTMLOutput class...
tree
|
commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
tree
|
commitdiff
2016-11-22
Jim Procter
JAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie...
tree
|
commitdiff
2016-11-22
gmungoc
JAL-2277 refactored AlignmentPanel.printUnwrapped to...
tree
|
commitdiff
2016-11-21
tcofoegbu
JAL-2277 bug fix for mis-alligned graphics output for...
tree
|
commitdiff
2016-11-21
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2016-11-21
tcofoegbu
JAL-2332 bugfix to enable structure chooser opening...
tree
|
commitdiff
2016-11-18
gmungoc
JAL-98 with the two types missing from last commit...
bug/JAL-98consensusMemory
tree
|
commitdiff
2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
tree
|
commitdiff
2016-11-17
gmungoc
JAL-98 javadoc, third party acknowledgements (and very...
tree
|
commitdiff
2016-11-16
Jim Procter
Merge branch 'features/JAL-1723_sequenceReport' into...
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2296 unit test for reading Chimera attributes to...
tree
|
commitdiff
2016-11-16
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2016-11-16
tcofoegbu
JAL-2322 JAL-2309 replaced references to isheadless...
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2324 fix and tests for comparison of Float.NaN...
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2319 corrected reporting of SIFTS mapping
tree
|
commitdiff
2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2296 don't copy attribute with value False
tree
|
commitdiff
2016-11-16
gmungoc
JAL-2295 don't exclude RESNUM from transfer to Chimera
tree
|
commitdiff
2016-11-14
tcofoegbu
JAL-2322 Refactored unified architecture for data ...
tree
|
commitdiff
2016-11-14
gmungoc
JAL-2296 new code and refactoring for 'copy Chimera...
tree
|
commitdiff
2016-11-14
gmungoc
JAL-2295 don't copy 'Chimera' features back to Chimera
tree
|
commitdiff
2016-11-14
gmungoc
JAL-2296 parse Chimera atomspec to AtomSpec
tree
|
commitdiff
2016-11-14
gmungoc
JAL-2296 report whether SequenceFeature actually added...
tree
|
commitdiff
2016-11-14
gmungoc
JAL-2295 JAL-2296 skeleton 'attributes to features...
tree
|
commitdiff
2016-11-11
tcofoegbu
JAL-2277 Refactored out duplicated method - printUnwrap...
tree
|
commitdiff
2016-11-11
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-11-11
gmungoc
JAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
tree
|
commitdiff
2016-11-11
gmungoc
JAL-2295 improved integrity of 'isFinishedInit' flag
tree
|
commitdiff
2016-11-11
gmungoc
JAL-2295 set finishedInit to false before checking...
tree
|
commitdiff
2016-11-11
gmungoc
JAL-2295 (optionally) return Chimera command reply
tree
|
commitdiff
2016-11-11
gmungoc
JAL-2295 correct test for Float.isNaN(score) !
tree
|
commitdiff
2016-11-10
tcofoegbu
Merge branch 'develop' into bug/JAL-2317_jmol_chimera...
tree
|
commitdiff
2016-11-10
tcofoegbu
JAL-2317 Fixed Chimera command for hiding/showing disti...
bug/JAL-2317_jmol_chimera-chain-factorisation
tree
|
commitdiff
2016-11-10
gmungoc
JAL-2295 additional tests, stronger sanitisation of...
tree
|
commitdiff
2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
tree
|
commitdiff
2016-11-09
gmungoc
JAL-2295 set attributes commands include feature value...
tree
|
commitdiff
2016-11-09
gmungoc
JAL-2295 single constant for "RESNUM" feature name
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2295 JAL-1596 method to pass a command script file...
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2301 made T hydrophobic as per the cited conservati...
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2295 feature and colour commands refactored to...
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2295 method added to return a compact mapped range...
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2295 extracted AtomSpecModel for reuse in Chimera...
tree
|
commitdiff
2016-11-08
gmungoc
JAL-2295 make RangeComparator a top level class for...
tree
|
commitdiff
2016-11-08
tcofoegbu
JAL-2292 updated method calls
tree
|
commitdiff
2016-11-08
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2016-11-08
tcofoegbu
JAL-2292 renamed method and improved implementation...
tree
|
commitdiff
2016-11-07
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
|
commitdiff
2016-11-07
gmungoc
JAL-2272 unit tests added for Platform.isControlDown
tree
|
commitdiff
2016-11-07
gmungoc
JAL-2282 show url links that need checked; remove ...
tree
|
commitdiff
2016-11-07
gmungoc
JAL-2295 handle no progress bar message properly
tree
|
commitdiff
2016-11-07
gmungoc
JAL-2295 small tidy of javadoc only
tree
|
commitdiff
2016-11-07
gmungoc
JAL-2295 (unoptimised) write Jalview features as Chimer...
tree
|
commitdiff
2016-11-04
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
tree
|
commitdiff
2016-11-04
kiramt
JAL-2315 Clear sequenceURLLinks if all sequence links...
tree
|
commitdiff
2016-11-04
tcofoegbu
JAL-2292 squashed bug that breaks feature mapping for...
tree
|
commitdiff
2016-11-04
tcofoegbu
JAL-2292 added javadoc for compareChar(..) utility...
tree
|
commitdiff
2016-11-04
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2016-11-04
tcofoegbu
JAL-2195 JAL-2262 house keeping
tree
|
commitdiff
2016-11-04
tcofoegbu
JAL-2292 fix for wrong mapping output in sequence mappi...
tree
|
commitdiff
2016-11-04
tcofoegbu
JAL-2292 Wrote utility method for comparing two char...
tree
|
commitdiff
2016-11-04
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
tree
|
commitdiff
2016-11-04
kiramt
JAL-2282 Better check for existing url links
tree
|
commitdiff
2016-11-04
gmungoc
JAL-2272 right mouse button on Mac is not Cmd equivalent!
tree
|
commitdiff
2016-11-04
kiramt
JAL-2282 Remove Cache dependency from applet
tree
|
commitdiff
2016-11-04
kiramt
JAL-2282 Message box stays on top at Jalview open;...
tree
|
commitdiff
2016-11-04
gmungoc
JAL-966 JAL-1854 removed redundant methods / modifiers...
tree
|
commitdiff
2016-11-03
kiramt
JAL-2282 Link menu disabled if there are no valid links
tree
|
commitdiff
2016-11-03
kiramt
JAL-2282 If checkbox on warning dialog is unclicked...
tree
|
commitdiff
2016-11-03
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2016-11-03
tcofoegbu
JAL-2312 Bug fix for repeated mapping generation from...
tree
|
commitdiff
2016-11-03
gmungoc
JAL-2310 don't double-count sequence matches; code...
tree
|
commitdiff
2016-11-03
gmungoc
JAL-2295 step 1 new menu item to transfer Jalview attri...
tree
|
commitdiff
2016-11-02
Jim Procter
JAL-345 JAL-1738 menu item, AlignFrame action listener...
tree
|
commitdiff
2016-11-02
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
tree
|
commitdiff
2016-11-02
Jim Procter
JAL-1738 JAL-345 fix for JAL-2302 only report Matches...
tree
|
commitdiff
2016-11-02
kiramt
JAL-2281 Use DBRefs.selectRefs to uppercase URL link...
tree
|
commitdiff
2016-11-02
kiramt
JAL-2282 Refactor applet too
tree
|
commitdiff
2016-11-02
Jim Procter
JAL-345 javadoc and note about JAL-2300
tree
|
commitdiff
2016-11-02
Jim Procter
JAL-354 JAL-1738 add returns SearchResultMatchI instanc...
tree
|
commitdiff
2016-11-02
Jim Procter
JAL-966 JAL-345 JAL-1738 decontaminate SearchResultI...
tree
|
commitdiff
2016-11-02
Jim Procter
JAL-966 JAL-345 JAL-1738 quick rewrite of scrollToPosit...
tree
|
commitdiff
2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
tree
|
commitdiff
2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
tree
|
commitdiff
2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
tree
|
commitdiff
2016-11-02
gmungoc
JAL-98 wording "negatively conserved" now "absence...
tree
|
commitdiff
2016-11-02
kiramt
JAL-2282 Code tidy
tree
|
commitdiff
2016-11-02
kiramt
JAL-2282 Renamed internal use of sequence id / db acces...
tree
|
commitdiff
2016-11-02
kiramt
JAL-2282 URLLink unit tests updated
tree
|
commitdiff
2016-11-01
Jim Procter
JAL-1738 JAL-345 fix broken calculation of newly marked...
tree
|
commitdiff
2016-11-01
gmungoc
Conservation now using ResidueCount; tests added
tree
|
commitdiff
2016-11-01
gmungoc
JAL-98 use Integer constants; tests added for propHash...
tree
|
commitdiff
2016-11-01
gmungoc
JAL-98 typo in javadoc
tree
|
commitdiff
2016-11-01
gmungoc
JAL-98 simplified repeat() method
tree
|
commitdiff
2016-11-01
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2016-11-01
tcofoegbu
JAL-2280 refactored and improved structure file identif...
tree
|
commitdiff
next