2017-01-10 |
kiramt | JAL-2316 Separate label/db name in UrlProviders. Unit... |
tree | commitdiff |
2017-01-09 |
kiramt | JAL-2316 Prevent applet from loading null links into... |
tree | commitdiff |
2017-01-09 |
gmungoc | JAL-2371 pull up isNucleotide to SequenceCollectionI |
tree | commitdiff |
2017-01-09 |
gmungoc | JAL-2371 remove ColourSchemeI.findColour(c), pure inter... |
tree | commitdiff |
2017-01-09 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-01-06 |
gmungoc | JAL-2371 slight simplification of findColour overrides |
tree | commitdiff |
2017-01-06 |
gmungoc | JAL-2371 correct Clustal, Blosum, PID colouring of... |
tree | commitdiff |
2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-06 |
gmungoc | JAL-2360 findColour() with no args removed from ColourS... |
tree | commitdiff |
2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-06 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-05 |
gmungoc | JAL-2374 fix popup out by one and multiple groups bugs |
tree | commitdiff |
2017-01-05 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-05 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-05 |
gmungoc | JAL-2373 set state of Above PID, By Conservation in... |
tree | commitdiff |
2017-01-05 |
gmungoc | JAL-2371 tests added |
tree | commitdiff |
2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
tree | commitdiff |
2016-12-29 |
gmungoc | JAL-2630 first pass groovy colour scheme (with slight... |
tree | commitdiff |
2016-12-23 |
gmungoc | JAL-2360 removed UserDefinedColours.userColourSchemes |
tree | commitdiff |
2016-12-23 |
gmungoc | JAL-2120 JAL-2360 remove obsolete PDBViewer |
tree | commitdiff |
2016-12-22 |
gmungoc | JAL-2360 fix bug that prematurely created a SequenceGroup |
tree | commitdiff |
2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper... |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-2360 set new/loaded colour scheme name correctly |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-2360 ColourMenuHelper now builds and selects items... |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-2360 comment only |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-2360 tidy up, simplify isApplicableTo test |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-2360 no RNAHelices colouring for groups |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-2361 Blosum is enabled for peptide |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-1421 add types to Map |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-2360 fix incorrect action on Cancel user defined... |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-2360 tidy spelling and file contents order only |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-2360 Javadoc and test cases for findAnnotation |
tree | commitdiff |
2016-12-20 |
gmungoc | JAL-2360 testRegisterColourScheme to demonstrate a... |
tree | commitdiff |
2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignF... |
tree | commitdiff |
2016-12-19 |
gmungoc | JAL-2360 amended toAppletParameter() for reproducible... |
tree | commitdiff |
2016-12-19 |
gmungoc | JAL-2361 select colour menu item by matching its name... |
tree | commitdiff |
2016-12-16 |
kiramt | JAL-2316 Added database name column to URL links table... |
tree | commitdiff |
2016-12-16 |
gmungoc | JAL-2356 enhanced unit test to verify reuse (or not... |
tree | commitdiff |
2016-12-16 |
Jim Procter | JAL-2360 report line number when threshold cannot be... |
tree | commitdiff |
2016-12-16 |
gmungoc | JAL-2360 added UserColourScheme.toAppletParameter+test... |
tree | commitdiff |
2016-12-16 |
gmungoc | JAL-2360 getColour() renamed to getColourScheme(),... |
tree | commitdiff |
2016-12-16 |
gmungoc | JAL-1705 JAL-98 use SortedMap as more accurate type... |
tree | commitdiff |
2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum, |
tree | commitdiff |
2016-12-15 |
kiramt | JAL-2316 Changes following review. |
tree | commitdiff |
2016-12-14 |
gmungoc | JAL-2360 added check for null annotations array |
tree | commitdiff |
2016-12-14 |
Jim Procter | Merge branch 'patch/JAL-2197_jpredforjnets' into develop |
tree | commitdiff |
2016-12-13 |
kiramt | Merge branch 'develop' into features/JAL-2316 |
tree | commitdiff |
2016-12-13 |
gmungoc | JAL-2365 test for lightgray, darkgray not lightGray... |
tree | commitdiff |
2016-12-13 |
gmungoc | JAL-2360 code formatting only and if-else changed to... |
tree | commitdiff |
2016-12-13 |
gmungoc | JAL-2361 adding items to applet colour menus, TCoffee... |
tree | commitdiff |
2016-12-12 |
gmungoc | JAL-2361 extract methods to (re-)build colour menu |
tree | commitdiff |
2016-12-12 |
gmungoc | JAL-2360 simplify nucleotide flag, remove setter |
tree | commitdiff |
2016-12-12 |
gmungoc | JAL-1544 backgroud -> background |
tree | commitdiff |
2016-12-12 |
kiramt | JAL-2316 Added GUI checks for duplicate link ids |
tree | commitdiff |
2016-12-12 |
kiramt | JAL-2316 Unit test update to UrlLinkTableModel and... |
tree | commitdiff |
2016-12-12 |
kiramt | JAL-2316 Added jalview.urls.* packages |
tree | commitdiff |
2016-12-12 |
kiramt | JAL-2316 Missed change from previous checkin |
tree | commitdiff |
2016-12-12 |
kiramt | JAL-2316 More unit testing and adjustments |
tree | commitdiff |
2016-12-12 |
gmungoc | JAL-2362 return correct lower-case colour; Javadoc... |
tree | commitdiff |
2016-12-12 |
gmungoc | JAL-2632 corrected lookup of residue colour |
tree | commitdiff |
2016-12-12 |
kiramt | JAL-2316 Unit tests |
tree | commitdiff |
2016-12-09 |
kiramt | JAL-2316 Unit test updates and associated minor changes... |
tree | commitdiff |
2016-12-09 |
gmungoc | JAL-2105 updated for reviewed REST version 4.8 |
tree | commitdiff |
2016-12-09 |
kiramt | JAL-2316 Unit testing, relax constraint that default... |
tree | commitdiff |
2016-12-09 |
gmungoc | JAL-1895 suppress RNA interaction colour option |
tree | commitdiff |
2016-12-08 |
gmungoc | JAL-2359 add Window menu entry only after all danger... |
tree | commitdiff |
2016-12-07 |
gmungoc | JAL-2356 use cached Sifts file if not expired |
tree | commitdiff |
2016-12-07 |
gmungoc | JAL-2354 handle error response when fetching features |
tree | commitdiff |
2016-12-07 |
gmungoc | JAL-2344 handle null format, simplify JalviewFileChoose... |
tree | commitdiff |
2016-12-07 |
kiramt | JAL-2316 Restructure identifiers.org download |
tree | commitdiff |
2016-12-05 |
kiramt | JAL-2316 Added UrlProvider factories. Tidied up labelling. |
tree | commitdiff |
2016-12-05 |
kiramt | JAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI... |
tree | commitdiff |
2016-12-02 |
kiramt | JAL-2316 GUI to allow to insert tokens into new URL... |
tree | commitdiff |
2016-12-02 |
kiramt | JAL-2316 GUI updates to Connections tab in Preferences... |
tree | commitdiff |
2016-11-30 |
Jim Procter | Merge branch 'features/JAL-2320_closeChimeraAction... |
tree | commitdiff |
2016-11-30 |
gmungoc | JAL-2344 use ".cif" for saved mmCIF file (and refactor... |
tree | commitdiff |
2016-11-29 |
gmungoc | JAL-2344 corrected conversion of Type enum to FileFormat features/JAL-2344FileFormatI |
tree | commitdiff |
2016-11-29 |
gmungoc | JAL-2344 FileFormat.isStructureFile replaces |
tree | commitdiff |
2016-11-28 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2016-11-28 |
tcofoegbu | Merge branch 'features/JAL-2326_JOptionPane-refactoring... |
tree | commitdiff |
2016-11-28 |
gmungoc | JAL-2344 added FileFormatI.isStructureFile() |
tree | commitdiff |
2016-11-28 |
gmungoc | JAL-2345 cache generated ImageIcon per file path |
tree | commitdiff |
2016-11-25 |
gmungoc | JAL-2344 dynamically determine recognised extensions... |
tree | commitdiff |
2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2016-11-25 |
gmungoc | JAL-2344 override to ignore (obsolete?) JalviewFileView |
tree | commitdiff |
2016-11-25 |
gmungoc | JAL-2344 use .equals() to compare FileFormatI objects |
tree | commitdiff |
2016-11-24 |
gmungoc | Distinguish text-only output formats and others (.jar... |
tree | commitdiff |
2016-11-24 |
tcofoegbu | JAL-2326 updated references of JOptionPane to JvOptionPane |
tree | commitdiff |
2016-11-24 |
Jim Procter | JAL-2325 applied BSD license for chimera/StrucViz2... |
tree | commitdiff |
2016-11-24 |
gmungoc | Further tweaks to get tests passing |
tree | commitdiff |
2016-11-24 |
tcofoegbu | JAL-2326 added layer of abstraction between Jalview... |
tree | commitdiff |
2016-11-24 |
Jim Procter | JAL-2325 apply license to new source files |
tree | commitdiff |
2016-11-24 |
gmungoc | FileFormatI further tweaks, clean compile |
tree | commitdiff |
2016-11-23 |
Jim Procter | Merge branch 'bug/JAL-2323disulfideOverview' into develop |
tree | commitdiff |
2016-11-23 |
Jim Procter | Merge branch 'documentation/JAL-2325_release2101' into... |
tree | commitdiff |
2016-11-23 |
Jim Procter | Merge branch 'develop' of source.jalview.org/git/jalvie... |
tree | commitdiff |
2016-11-22 |
Jim Procter | JAL-2197 changed tooltip for Jnet annotation rows to... |
tree | commitdiff |
2016-11-22 |
tcofoegbu | Merge branch 'bug/JAL-2277_refactorPrintUnwrapped'... |
tree | commitdiff |
2016-11-22 |
Jim Procter | Merge branch 'features/JAL-2177_update_jmol_to_14.6... |
tree | commitdiff |
2016-11-22 |
gmungoc | JAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped |
tree | commitdiff |
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