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JAL-3829 JAL-3855 ignore case when detecting alphafold ID
[jalview.git]
/
src
/
2020-06-25
gmungoc
JAL-2010 unused prototype method removed
tree
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commitdiff
2020-06-25
gmungoc
JAL-3518 pull up [get|list]ResidueAttributes to Structu...
tree
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commitdiff
2020-06-23
gmungoc
JAL-3518 separation of ChimeraXManager, pull up of...
tree
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commitdiff
2020-06-23
gmungoc
JAL-3518 pull up closeViewer() and external viewer...
tree
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commitdiff
2020-06-01
gmungoc
JAL-3518 more test coverage for structure commands
tree
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commitdiff
2020-05-29
gmungoc
JAL-2422 test updated
tree
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commitdiff
2020-05-29
gmungoc
Merge branch 'feature/JAL-3551Pymol' into develop
tree
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commitdiff
2020-05-29
gmungoc
JAL-3551 null pointer defence while structure files...
feature/JAL-3551Pymol
tree
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commitdiff
2020-05-28
gmungoc
JAL-3551 corrected Pymol open session command
tree
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commitdiff
2020-05-28
gmungoc
JAL-2422 correct ChimeraX save/open session commands...
tree
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commitdiff
2020-05-26
gmungoc
JAL-3624 log when SIFTS mapping fails
tree
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commitdiff
2020-05-26
gmungoc
Merge branch 'feature/JAL-3624siftsInJS' into develop
tree
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commitdiff
2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
tree
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commitdiff
2020-05-24
Jim Procter
JAL-3407 redact Java 8 incompatible '<>' with anonymous...
tree
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commitdiff
2020-05-21
gmungoc
JAL-3551 copy Jalview features to Pymol 'p' (with pull...
tree
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commitdiff
2020-05-21
gmungoc
JAL-2422 highlight ChimeraX selection (ChimeraX-1.0...
tree
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commitdiff
2020-05-20
gmungoc
JAL-3626 use Viewer.scriptWait() to send Jmol commands...
tree
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commitdiff
2020-05-19
gmungoc
JAL-3621 corrected sequence feature sort and test
tree
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commitdiff
2020-05-19
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
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commitdiff
2020-05-19
gmungoc
JAL-3624 use temp file for SIFT download in JS, correct...
feature/JAL-3624siftsInJS
tree
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commitdiff
2020-05-18
gmungoc
JAL-3463 avoid Thread.sleep() as not supported in SwingJS
tree
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commitdiff
2020-05-18
gmungoc
JAL-3621 update to intervalstore v1.1
tree
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commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
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commitdiff
2020-05-18
gmungoc
JAL-3613 remove debug code committed in error
tree
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commitdiff
2020-05-15
gmungoc
JAL-3619 default silently to Jmol if viewerType absent...
tree
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commitdiff
2020-05-15
gmungoc
JAL-3551 pull up Close Viewer dialog to base class
tree
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commitdiff
2020-05-15
gmungoc
Merge branch 'feature/JAL-3551Pymol' into feature/JAL...
tree
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commitdiff
2020-05-15
gmungoc
JAL-3551 raise label on ('highlight') structure residue...
tree
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commitdiff
2020-05-12
gmungoc
JAL-3518 tidy method, remove obsolete comment
tree
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commitdiff
2020-05-12
gmungoc
JAL-3518 failsafe check for null Jmol filename while...
tree
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commitdiff
2020-05-11
gmungoc
JAL-3551 concatenate colour by sequence commands for...
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 JAL-3551 viewer text/variables generalised...
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 ChimeraX paths (versions up to 1.0) added...
tree
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commitdiff
2020-05-11
gmungoc
JAL-1333 additional Chimera versions for Windows instal...
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 restore saved ChimeraX session from project
tree
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commitdiff
2020-05-04
Ben Soares
JAL-3608 streamlined LaF methods and allow specificying...
tree
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commitdiff
2020-05-03
Ben Soares
JAL-3608 also look at user pref PREFERRED_LAF
tree
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commitdiff
2020-05-01
gmungoc
JAL-3613 check sequence overlap when matching search...
tree
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commitdiff
2020-05-01
Ben Soares
JAL-3608 Now reporting the actual LookAndFeel in Java...
tree
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commitdiff
2020-05-01
Ben Soares
JAL-3608 Added java builtin NimbusLookAndFeel option...
tree
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commitdiff
2020-04-30
Ben Soares
JAL-3608 Enforcing MetalLookAndFeel as default on linux...
tree
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commitdiff
2020-04-30
Ben Soares
JAL-3608 Added 'metal' option for laf property
tree
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commitdiff
2020-04-30
gmungoc
JAL-3551 save structure viewer session refactorings...
tree
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commitdiff
2020-04-30
gmungoc
JAL-3551 tidied error handling for HTTP request
tree
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commitdiff
2020-04-25
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
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commitdiff
2020-04-23
soares
JAL-3608 JAL-3416 Added a 'gtk' option. Not currently...
tree
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commitdiff
2020-04-22
soares
JAL-3608 saved in Eclipse with auto formatting
tree
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commitdiff
2020-04-22
Ben Soares
JAL-3608 Added CrossPlatform LaF and made configurable...
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3407 add GPL license to Jalview source files
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'bug/JAL-3574filterByPOS' into documentati...
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'bug/JAL-3567virtualFeatureCoordinates...
tree
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commitdiff
2020-04-21
Jim Procter
JAL-367 code tidy
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3567 translated rather than imputed peptide
tree
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commitdiff
2020-04-21
gmungoc
JAL-3603 load annotation file from RELATIVE_URL in...
tree
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commitdiff
2020-04-17
gmungoc
JAL-3567 unit tests for linked feature tooltips
tree
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commitdiff
2020-04-16
BobHanson
JAL-3587 Load Project bug
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 adjust layout of linked feature report, unit...
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 added 'imputed by Jalview' to protein conseque...
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 report mapped location for virtual features...
tree
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commitdiff
2020-04-14
Jim Procter
Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
tree
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commitdiff
2020-04-14
gmungoc
JAL-3583 remove debug logging, Javadoc added
tree
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commitdiff
2020-04-13
gmungoc
JAL-3574 Matcher with integer/long value pattern (e...
tree
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commitdiff
2020-04-12
gmungoc
JAL-3596 change redacted
tree
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commitdiff
2020-04-12
gmungoc
JAL-3596 don't draw text over features if Show Text...
tree
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commitdiff
2020-04-12
gmungoc
JAL-3583 consistent last[Formatted]Tooltip, show once...
tree
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commitdiff
2020-04-08
BobHanson
JAL-3253 merge of new SwingJS api
tree
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commitdiff
2020-04-07
soares
merge from develop: Most of the changes
tree
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commitdiff
2020-04-07
BobHanson
JAL-3589 (old Platform) fix for Jalvew-JS/develop only.
tree
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commitdiff
2020-04-07
gmungoc
JAL-3210 fudge for JalviewJS to avoid IntervalStore...
tree
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commitdiff
2020-04-06
Jim Procter
JAL-3407 redact java 8 incompatible type inference
tree
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commitdiff
2020-04-06
gmungoc
JAL-3581 no hidden sequence marker if hidden markers...
tree
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commitdiff
2020-04-06
gmungoc
JAL-3581 no hidden sequence marker if hidden markers...
tree
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commitdiff
2020-04-06
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-04-06
gmungoc
JAL-3579 no Feature Editor if features not shown
tree
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commitdiff
2020-03-31
gmungoc
JAL-3210 JAL-3130 merge changes to JSON processing
tree
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commitdiff
2020-03-31
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-30
Jim Procter
JAL-3407 JAL-3130 back out java 9+ syntax that breaks...
tree
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commitdiff
2020-03-30
gmungoc
JAL-3210 debug logging commented out
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-20
Jim Procter
JAL-3549 javadoc
tree
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commitdiff
2020-03-19
gmungoc
JAL-3305 don't propagate an empty SelectionGroup to...
tree
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commitdiff
2020-03-16
gmungoc
JAL-3551 tidying, improved commands, fix Jmol model...
tree
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commitdiff
2020-03-16
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2020-03-16
gmungoc
JAL-3551 the correct PyMOL colour by chain command
tree
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commitdiff
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
tree
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commitdiff
2020-03-09
gmungoc
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
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commitdiff
2020-03-09
gmungoc
JAL-3528 unit tests added for failed lookup, Javadoc
tree
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commitdiff
2020-03-09
gmungoc
JAL-3549 JAL-3305 no Sort By Score / Density if no...
tree
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commitdiff
2020-03-09
gmungoc
JAL-3412 update layout whenever desired id width changes
testbuild/JAL-3412_getIdWidth_test
tree
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commitdiff
2020-03-06
gmungoc
JAL-3187 unit test for findComplementFeaturesAtResidue
tree
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commitdiff
2020-03-06
gmungoc
Merge branch 'feature/JAL-3468featureDescriptionEllipsi...
tree
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commitdiff
2020-03-06
gmungoc
JAL-3468 i18n and additional unit tests
feature/JAL-3468featureDescriptionEllipsis
tree
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commitdiff
2020-03-05
Jim Procter
Merge branch 'improvement/JAL-3543_dont_report_null_ver...
tree
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commitdiff
2020-03-04
Ben Soares
JAL-3468 small tidy
tree
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commitdiff
2020-03-04
Ben Soares
JAL-3468 improvement to feature description truncation...
tree
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commitdiff
2020-03-04
Ben Soares
JAL-3468 Obsessively fixed self-closing <br/> tags
tree
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commitdiff
2020-03-03
soares
JAL-3468 Adapted methods to report how many features...
tree
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commitdiff
2020-03-03
gmungoc
JAL-3158 superseded superposeStructures methods removed
tree
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commitdiff
2020-03-03
gmungoc
JAL-3518 more pull up / test coverage of structure...
tree
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commitdiff
2020-03-02
Jim Procter
JAL-3407 redact Java 8 incompatible '<>' with anonymous...
tree
|
commitdiff
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