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JAL-4199 Remove commented out code
[jalview.git] / src /
2022-06-13 Ben SoaresJAL-3416 Added some mac specific FlatLAF settings.... tree | commitdiff
2022-06-09 Jim ProcterMerge branch 'bug/JAL-4020_add_pymolwin_paths' into... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'patch/JAL-4024_jumpScrollHang' into develop tree | commitdiff
2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps... patch/JAL-4024_jumpScrollHang tree | commitdiff
2022-06-07 Ben SoaresJAL-4020 class formatting tree | commitdiff
2022-06-07 Ben SoaresJAL-4020 added the \Scripts\pymol.exe. to the pathList tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added the +2 arg for PyMOLWin.exe allowing... tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 class reformatting tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added path search for global installation... tree | commitdiff
2022-06-06 Jim ProcterJAL-4023 use %g for distances (scientific notation... improvement/JAL-4023_snotation_for_trees tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added search for PyMOLWinWithConsole.bat ... tree | commitdiff
2022-06-06 Jim ProcterJAL-4023 store distances as doubles tree | commitdiff
2022-05-12 Ben SoaresJAL-4014 4 gecos colour schemes added tree | commitdiff
2022-04-26 Mateusz WarownyJAL-3878 Implement RNA Sec. Str. Pred. discovery for... JAL-3878_ws-overhaul-3 tree | commitdiff
2022-04-25 Mateusz WarownyJAL-3878 log full worker repr in AlignCalcManager tree | commitdiff
2022-04-25 Mateusz WarownyJAL-3878 Fix edit settings dialog prompting to discard... tree | commitdiff
2022-04-21 Ben SoaresMerge branch 'develop' into merge/JAL-3978+JAL-3553... tree | commitdiff
2022-04-21 Ben SoaresMerge branch 'develop' into task/JAL-3991_check_actual_... tree | commitdiff
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into... tree | commitdiff
2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking... bug/JAL-3997_NPE_in_wrapped_mode tree | commitdiff
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu... tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Use slivka client's URL when building web... tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Add conservation service discovery tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Build interactive services menu tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Implement prot. seq. an. discovery for slivka. tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Implement gui elements for annotation servicces tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Create SlivkaAnnotationWSClient tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Add full name getter to ActionI tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Log status changes in annotation task tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Allow null value for action name tree | commitdiff
2022-04-07 Mateusz WarownyJAL-3878 Add action and task for annotation services tree | commitdiff
2022-04-06 Ben SoaresJAL-3991 Made info displayed only when needed (Java... tree | commitdiff
2022-04-06 Ben SoaresJAL-3991 Added information output about the slightly... tree | commitdiff
2022-04-06 Ben SoaresJAL-3991 JAVA_COMPILE_VERSION put into build_properties... tree | commitdiff
2022-04-05 Jim ProcterJAL-3981 patch tests and remove errant imports tree | commitdiff
2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply tree | commitdiff
2022-04-05 Jim ProcterMerge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_d... tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Introduce IProgressIndicator#addProgressBar tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Fix method name to fireTaskRestarted tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Add char[] constructor to Sequence tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Make BaseJob setters public so they can be... tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Add fullName to BaseAction class which combine... tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Move status precedence list to JobStatus class tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Add uid to WS Tasks tree | commitdiff
2022-03-31 Ben SoaresMerge branch 'develop' into improvement/JAL-3978_add_gr... tree | commitdiff
2022-03-31 Jim ProcterJAL-3985 formatting tree | commitdiff
2022-03-31 Jim ProcterJAL-3985 split PDB id queries into multiple queries... tree | commitdiff
2022-03-30 Jim ProcterMerge branch 'patch/JAL-3976_3dbeaconsnull' into develop tree | commitdiff
2022-03-30 Jim ProcterJAL-360 JAL-3975 update parent for text colour dialog... tree | commitdiff
2022-03-30 Ben SoaresJAL-360 JAL-3975 make AlignFrame the parent of FeatureE... tree | commitdiff
2022-03-28 Mateusz WarownyJAL-3878 Patch preferences window to use new discoverer. tree | commitdiff
2022-03-28 Mateusz WarownyJAL-3878 Fix discoverer being stuck on BEGIN state... tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Add slivka discoverer and menu to AlignFrame tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Change align frame added to desktop to correct one tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Wrap infoPanel updates with SwingUtilities... tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Fix re-alignment-capable services detection. tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Clear services list on reload. tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Fix task status precedence calculation tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Fix NullPointerExceptions caused by nulls... tree | commitdiff
2022-03-25 Mateusz WarownyJAL3878 Implement slivka service discoverer tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Move action name initialization to its own... tree | commitdiff
2022-03-25 Jim ProcterJAL-3980 JAL-3979 TODOs bug/JAL-3980_JAL-3981_tooltips_sequence_details tree | commitdiff
2022-03-25 Jim ProcterJAL-3980 defensive copy - inefficient but fixes bug tree | commitdiff
2022-03-25 Jim ProcterJAL-3981 Additional line breaks - sort of helps tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Create ws2 client for slivka services tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Add builders to each service parameter class tree | commitdiff
2022-03-24 Jim ProcterJAL-3981 strategic newlines to help speed up Java's... tree | commitdiff
2022-03-24 Mateusz WarownyJAL-3878 Create service agnostic param datastore and set tree | commitdiff
2022-03-23 Mateusz WarownyJAL-3878 Create beans for un/marshalling service parameters tree | commitdiff
2022-03-23 Jim ProcterJAL-3976 skip entries with null values when analyzing tree | commitdiff
2022-03-18 Ben SoaresJAL-3978 Using getdowninstanceappdir and getdowninstanc... tree | commitdiff
2022-03-18 Ben SoaresJAL-3978 New tasks to build archive 'old' dir with... tree | commitdiff
2022-03-18 Mateusz WarownyJAL-3878 Create abstract ws discoverer providing common... tree | commitdiff
2022-03-15 Mateusz WarownyJAL-3878 Connect alignment services with gui tree | commitdiff
2022-03-14 Mateusz WarownyJAL-3878 Move array index search to ArrayUtils tree | commitdiff
2022-03-11 Mateusz WarownyJAL-3878 Create web service menu manager. tree | commitdiff
2022-03-11 Mateusz WarownyJAL-3878 Add hasPresets and hasParameters utility metho... tree | commitdiff
2022-03-09 Mateusz WarownyJAL-3878 Add WebServiceProviderI - a view of services. tree | commitdiff
2022-03-09 Mateusz WarownyJAL-3878 Improve performance of gap sequence construction. tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 apply copyright to source tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-03-08 Jim ProcterJAL-3108 updated Ensembl client and model species names tree | commitdiff
2022-03-08 Mateusz WarownyJAL-3878 Add web service reference to actions. tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse... tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti... tree | commitdiff
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2 tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3814 don’t automatically launch the news... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3814 NONEWS property tree | commitdiff
2022-03-04 Mateusz WarownyJAL-3878 Change visibility of WebService methods to... tree | commitdiff
2022-03-03 Mateusz WarownyJAL-3878 Create alignment service "backend" classes tree | commitdiff
2022-03-03 Mateusz WarownyJAL-3878 Remove unused JobStatus methods tree | commitdiff
2022-03-03 Mateusz WarownyJAL-3878 Create abstract base classes for non-interacti... tree | commitdiff
2022-03-02 Jim ProcterMerge branch 'benreview/JAL-3691_for_2_11_2_getdownrebu... tree | commitdiff
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