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JAL-1705 check Retry-After response header
[jalview.git] / src /
2016-01-21 gmungocJAL-1705 toString() added (for debugging) tree | commitdiff
2016-01-21 gmungocJAL-1705 isEmpty() and (debug) toString() methods added tree | commitdiff
2016-01-12 gmungocJAL-1191 cache isA (great-)grandparents as well for... tree | commitdiff
2016-01-11 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-01-11 gmungocJAL-1989 additional ways to 'mirror' show/hide columns... tree | commitdiff
2016-01-11 tcofoegbuJAL-1990 added a progress indicator for Structure Choos... tree | commitdiff
2016-01-11 tcofoegbumerge tree | commitdiff
2016-01-11 tcofoegbuJAL-1991 bug fix for some flat-file printers to check... tree | commitdiff
2016-01-11 gmungocJAL-1989 map hidden column ranges tree | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... tree | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... tree | commitdiff
2016-01-07 tcofoegbumerge tree | commitdiff
2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS... tree | commitdiff
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_... tree | commitdiff
2016-01-05 gmungocJAL-653 typed map for feature colours in method signature tree | commitdiff
2016-01-05 gmungocJAL-1191 check for obsolete term when descriptions... tree | commitdiff
2015-12-23 gmungocJAL-1191 zipped SO OBO file added to /resources, more... tree | commitdiff
2015-12-22 gmungocJAL-1191 and provide the SO OBO file in /resources :-) tree | commitdiff
2015-12-22 gmungocJAL-1191 SequenceOntology wrapping/caching SO.OBO via... tree | commitdiff
2015-12-22 gmungocJAL-1191 stub class for a SequenceOntology wrapper tree | commitdiff
2015-12-22 gmungocJAL-1421 parameterised map constructor used tree | commitdiff
2015-12-22 gmungocJAL-653 encapsulate Strand, Attributes, Status of Seque... tree | commitdiff
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding... tree | commitdiff
2015-12-22 gmungocJAL-391 new Calculate options to Reverse, Reverse Compl... tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from... tree | commitdiff
2015-12-22 gmungocJAL-653 set showSequenceFeatures=true on loading a... tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame internal refactor, merge... tree | commitdiff
2015-12-22 gmungocJAL-653 hold AlignedCodonFrame collections as list... tree | commitdiff
2015-12-09 Jim ProcterJAL-1982 hotfix to prevent NPE with applet launch on... tree | commitdiff
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings' tree | commitdiff
2015-12-03 gmungocJAL-653 handle reverse strand mapping in SearchResults... tree | commitdiff
2015-12-03 gmungocJAL-653 mappings always reside on the dataset alignment... tree | commitdiff
2015-12-03 gmungocJAL-653 handle reverse strand mappings also tree | commitdiff
2015-12-03 gmungocJAL-1827 code and comment tidy up tree | commitdiff
2015-12-02 gmungocJAL-1827 refactored to handle missing residues better tree | commitdiff
2015-12-02 gmungocJAL-1827 added overloaded method for convenience tree | commitdiff
2015-11-30 gmungocJAL-1421 generics loop syntax; 'bug?' comment added tree | commitdiff
2015-11-30 gmungocJAL-653 small comment change only tree | commitdiff
2015-11-30 gmungocJAL-652 refactored to remove one method tree | commitdiff
2015-11-30 gmungocJAL-653 (experimental) 'realise' dummy sequences in... tree | commitdiff
2015-11-30 gmungocJAL-1980 check for null alignment; JAL-1551 @Override... tree | commitdiff
2015-11-30 gmungocJAL-653 (experimental) methods to resolve dummy to... tree | commitdiff
2015-11-30 gmungocJAL-653 getStrand javadoc/refactor/test tree | commitdiff
2015-11-30 gmungocJAL-1421 use generics JAL-1551 @Override annotations... tree | commitdiff
2015-11-30 gmungocJAL-652 further refactoring / tests tree | commitdiff
2015-11-30 gmungocJAL-653 MapList constructor merges any contiguous ranges tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureCho... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 applet build debug tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings tree | commitdiff
2015-11-23 tcofoegbuJAL-1479 commented out DBRef fetching code from SIFTS... tree | commitdiff
2015-11-21 gmungocJAL-1968 remove feature links tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference... tree | commitdiff
2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mappi... tree | commitdiff
2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS... tree | commitdiff
2015-11-11 tcofoegbuJAL-1479 JAL-1957 Added code to enable simultaneous... tree | commitdiff
2015-11-11 tcofoegbumerge tree | commitdiff
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping tree | commitdiff
2015-11-10 Jim ProcterJAL-653 added missing pragma string to processing filter tree | commitdiff
2015-11-10 Jim ProcterMerge branch 'features/JAL-1705_ensembl' of source... features/JAL-1705_ensembl tree | commitdiff
2015-11-10 tcofoegbuJAL 1960 added code to restrict structure chooser to... tree | commitdiff
2015-11-09 gmungocJAL-1705 type enum can encapsulate the corresponding... tree | commitdiff
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping tree | commitdiff
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc... tree | commitdiff
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor tree | commitdiff
2015-10-30 Jim ProcterJAL-1954 rejigged PFAMFile to split on ‘\t’ if no space... tree | commitdiff
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source... tree | commitdiff
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing... tree | commitdiff
2015-10-28 tcofoegbuJAL-1952 bugfix tree | commitdiff
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for... tree | commitdiff
2015-10-23 gmungocJAL-1943 don't try to unmarshal non-xml files in V1... tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more... tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 implemented preferences for SIFTs / Needleman... tree | commitdiff
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor tree | commitdiff
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge... tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-15 Jim ProcterJAL-1923 formatting tree | commitdiff
2015-10-15 Jim ProcterJAL-1923 add groups to codon-complement and notify... tree | commitdiff
2015-10-15 Jim ProcterJAL-1923 fix: don’t add group twice tree | commitdiff
2015-10-14 tcofoegbuJAL-1926 created interface for DBRefEntry tree | commitdiff
2015-10-14 tcofoegbuJAL-1926 added supporting model changes to enable savin... tree | commitdiff
2015-10-13 tcofoegbuJAL-1479 added SIFTS XSD and generated JAXB bindings... tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 add licensing tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 organise imports tree | commitdiff
2015-10-08 tcofoegbumerge tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 organise imports tree | commitdiff
2015-10-07 tcofoegbuJAL-1912 added documentation features/JAL-1912_biojson-per-sequence-annotation tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 formatting tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 javadoc for adjustForAlignment stating current... tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 efficiency: look up sequenceMapping once per... tree | commitdiff
2015-10-07 Jim ProcterMerge branch 'features/JAL-1912_biojson-per-sequence... tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 house keeping tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 added null check for SequenceMapping variable... tree | commitdiff
2015-10-05 gmungocJAL-1812 set/return currentAlFrame for Groovy in headle... tree | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into features/JAL-1912_biojson... tree | commitdiff
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc tree | commitdiff
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