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Merge branch 'bug/JAL-2727closeAllFreeMemory' into develop
[jalview.git]
/
src
/
2017-06-08
kiramt
JAL-2591 Made redraw flag in OverviewRenderer volatile
tree
|
commitdiff
2017-06-08
kiramt
JAL-2591 made redraw volatile
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 Refactor HiddenColumns to use ArrayList instea...
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 More HiddenColumns refactoring. Tests passing.
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 cache first/last residue column positions...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 setStatusMessage avoid redundant findPosition...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 reuse findIndex result if start==end
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Further refactoring (still incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 More refactoring (incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Hidden columns regions can be output to string...
tree
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commitdiff
2017-06-07
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 updated HiddenColumns::findHiddenRegionPositio...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 ported to applet
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Overview changes ported to applet
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 More rationalising of hiddencols
tree
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commitdiff
2017-06-07
gmungoc
JAL-2386 ensure group conservation shading is applied...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Overview window update interrupts
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Increased granularity of overview panel update...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 simplifying hidden columns usage
tree
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commitdiff
2017-06-06
kiramt
JAL-2591 Removed getHiddenRegions()==null checks which...
tree
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commitdiff
2017-06-06
kiramt
JAL-2591 Added readwrite locking on HiddenColumns
tree
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commitdiff
2017-06-06
gmungoc
JAL-2589 correct colour for Gap in Score and User Defin...
tree
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commitdiff
2017-06-06
gmungoc
JAL-2526 less stringent test for invalid cursor
tree
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commitdiff
2017-06-06
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2576'...
tree
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commitdiff
2017-06-05
Jim Procter
JAL-2590 patch for rendering eggnog trees with polytomi...
tree
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commitdiff
2017-06-05
kiramt
JAL-2588 Naive implementation of gaps as grey in overview
tree
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commitdiff
2017-06-05
Jim Procter
Merge branch 'bug/JAL-2576' into develop
tree
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commitdiff
2017-06-05
kiramt
JAL-2586 Checkstyle flagged fix of unintended fall...
tree
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commitdiff
2017-06-05
gmungoc
JAL-2505 comments updated
tree
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commitdiff
2017-06-05
gmungoc
JAL-2480 remove redundant method, further test coverage
tree
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commitdiff
2017-06-05
gmungoc
JAL-2505 explicit (and final) contactFeature property
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2526sequenceCursor' into
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
features/JAL-2526sequenceCursor
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2228 java 1.7 compliance
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 only hide/show columns intersecting with curre...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 get bitset representing hidden columns
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 use HiddenColumns.hideMarkedBits and take...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 method taking a BitSet for hiding columns
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 bug fix - BitSet.set is [start,end+1)
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 ‘Hide Insertions’ now operates on selection...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 SequenceI.getInsertionsAsBits for convenient...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2582 comment about IDs being lost if they resembl...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2582 recognise ENS…P peptide IDs and make two getPa...
tree
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commitdiff
2017-06-02
Jim Procter
Merge branch 'bug/JAL-2578' into develop
tree
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commitdiff
2017-06-02
Jim Procter
Merge branch 'bug/JAL-2577' into develop
tree
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commitdiff
2017-06-02
Jim Procter
Merge branch 'features/JAL-2228_featureSetCounts_minRan...
tree
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commitdiff
2017-06-02
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
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commitdiff
2017-06-02
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
|
commitdiff
2017-06-02
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-02
gmungoc
JAL-2526 additional tests for findPosition with/without...
tree
|
commitdiff
2017-06-02
tcofoegbu
JAL-2473 revised default minimum dimension for Alignmen...
tree
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commitdiff
2017-06-02
Jim Procter
JAL-2228 always create zero score annotations, since...
tree
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commitdiff
2017-06-02
Jim Procter
JAL-2228 always set minimum for count to zero for annot...
tree
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commitdiff
2017-06-02
kiramt
JAL-2576 Proposed fix
bug/JAL-2576
tree
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commitdiff
2017-06-02
kiramt
JAL-2577 Don't allow viewport ranges below 0. Unit...
bug/JAL-2577
tree
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commitdiff
2017-06-02
kiramt
JAL-2578 Moved hidden columns reveal to before selectio...
bug/JAL-2578
tree
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commitdiff
2017-06-02
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
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commitdiff
2017-06-01
gmungoc
JAL-2526 additional calls to sequenceChanged() after...
tree
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commitdiff
2017-06-01
gmungoc
JAL-2526 zapCursor() renamed sequenceChanged()
tree
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commitdiff
2017-06-01
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
|
commitdiff
2017-06-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
|
commitdiff
2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
tree
|
commitdiff
2017-06-01
Jim Procter
Merge branch 'features/JAL-1648_cache_user_inputs'...
tree
|
commitdiff
2017-05-31
Jim Procter
Merge branch 'JAL-2571' into develop
tree
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commitdiff
2017-05-31
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
|
commitdiff
2017-05-31
gmungoc
JAL-2483 JAL-2575 don't sort newly discovered features
tree
|
commitdiff
2017-05-31
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
|
commitdiff
2017-05-31
tcofoegbu
Fixed failing tests
tree
|
commitdiff
2017-05-31
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
|
commitdiff
2017-05-31
gmungoc
JAL-2574 preparation for Sequence.findFeatures(col1...
tree
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commitdiff
2017-05-31
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-31
gmungoc
JAL-2547 handle contact features 'around' a gap correctly
tree
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commitdiff
2017-05-30
kiramt
JAL-2573 Fixes for alignment < viewport width, and...
JAL-2571
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-30
gmungoc
JAL-2547 tooltip/AmendFeatures on gap straddled by...
tree
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commitdiff
2017-05-30
kiramt
JAL-2571 Corrected alignment width/height checks to...
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
|
commitdiff
2017-05-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-30
gmungoc
JAL-2570 don't zap group colour scheme when mapping...
tree
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commitdiff
2017-05-30
gmungoc
JAL-2526 first draft of findIndex/findPosition with...
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'bug/JAL-2034contextchange' into develop
tree
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commitdiff
2017-05-29
tcofoegbu
JAL-1648 improvement on finder searchbox keyboard contr...
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
tree
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commitdiff
2017-05-29
Jim Procter
JAL-2533 update javadoc
features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url
tree
|
commitdiff
2017-05-29
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-29
tcofoegbu
JAL-1648 code fix - enter key should pick selected...
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'bug/JAL-2536' into develop
tree
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commitdiff
2017-05-29
Jim Procter
JAL-2536 tweak javadoc wording
tree
|
commitdiff
2017-05-29
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-29
gmungoc
JAL-2526 Sequence.findPositions to get residue position...
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'bug/JAL-2517cancelAppletColour' into...
tree
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commitdiff
2017-05-27
Jim Procter
Merge branch 'bug/JAL-2491' into develop
tree
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commitdiff
2017-05-27
Jim Procter
Merge branch 'bug/JAL-2547tooltipOnGap' into develop
tree
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commitdiff
2017-05-27
Jim Procter
JAL-2526 test and documentation for SeqPanel.setStatus...
tree
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commitdiff
2017-05-27
Jim Procter
JAL-2562 javadoc TODO
tree
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commitdiff
2017-05-26
kiramt
JAL-2491 Missed port to applet from JAL-1691
bug/JAL-2491
tree
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commitdiff
2017-05-26
tcofoegbu
JAL-2465 Improvement to re-instate storing recently...
tree
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commitdiff
next