JAL-2465 Improvement to re-instate storing recently opened URLs for alignments loaded...

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index bd8bc53..b7629c4 100755 (executable)
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -345,12 +345,16 @@ public class FileLoader implements Runnable
               String tempStructureFileStr = createNamedJvTempFile(
                       urlLeafName, structExt);
               UrlDownloadClient.download(file, tempStructureFileStr);
-              file = tempStructureFileStr;
-              protocol = DataSourceType.FILE;
+              al = fa.readFile(tempStructureFileStr, DataSourceType.FILE,
+                      format);
+              source = fa.getAlignFile();
+            }
+            else
+            {
+              al = fa.readFile(file, protocol, format);
+              source = fa.getAlignFile(); // keep reference for later if
+                                          // necessary.
             }
-            al = fa.readFile(file, protocol, format);
-            source = fa.getAlignFile(); // keep reference for later if
-                                        // necessary.
           }
         } catch (java.io.IOException ex)
         {