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JAL-3130 some clover fixes for helplinks. Use 'gradle test -Pclover=true'
[jalview.git]
/
src
/
2018-08-14
gmungoc
JAL-3078 reset Tree font (only!) on Cancel
bug/JAL-3078cancelTreeFont
tree
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commitdiff
2018-08-10
gmungoc
JAL-3018 updated to Ensembl REST 7.0
tree
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commitdiff
2018-08-10
gmungoc
JAL-3076 refactor for more efficient scan of 'gene...
tree
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commitdiff
2018-08-10
gmungoc
JAL-3076 fetch Ensembl sequence as JSON instead of...
tree
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commitdiff
2018-08-03
Ben Soares
JAL-3061
tree
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commitdiff
2018-08-02
Ben Soares
JAL-3053
tree
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commitdiff
2018-07-30
bsoares
Fixed bug ignoring "alpha" extended braces in RNA SS...
tree
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commitdiff
2018-07-25
gmungoc
JAL-3073 select columns if dragging sideways in a graph...
bug/JAL-3072scrollThread
tree
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commitdiff
2018-07-25
gmungoc
JAL-3074 don't scroll up/down on drag out of scale...
tree
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commitdiff
2018-07-25
gmungoc
JAL-3072 SeqPanel.stopScrolling on mouse up in scale...
tree
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commitdiff
2018-07-17
bsoares
JAL-3065
tree
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commitdiff
2018-07-03
gmungoc
JAL-3054 table tooltip follow mouse in a sensible manner
bug/JAL-3049colourCellTooltip
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 removed wrong way to set tooltip
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 JAL-2069 colour icon tooltip including by...
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 working tooltip on colours column
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3042 don't allow user to change default history...
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-07
Jim Procter
Merge branch 'bugs/JAL-3009_blockingNetworkThreads...
tree
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commitdiff
2018-06-07
gmungoc
JAL-2755 correct Javadoc and error handling
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
tree
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commitdiff
2018-06-06
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 revised TODO for JAL-3025
bug/JAL-2920_uniprotvariantfeature
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 don’t output variant/original sequence as...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-1920 JAL-3017 use newline not <br/> in description...
tree
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commitdiff
2018-06-06
gmungoc
JAL-3013 ensure Chimera as a symlink gets resolved
tree
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commitdiff
2018-06-05
Jim Procter
JAL-3009 news reader thread should be in background...
bugs/JAL-3009_blockingNetworkThreads
tree
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commitdiff
2018-06-05
Jim Procter
JAL-3009 Identifiers.Org retrieval on background thread.
tree
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commitdiff
2018-06-04
gmungoc
JAL-3019 correctly form toRange of 'traversed' MapList
tree
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commitdiff
2018-06-04
gmungoc
JAL-3018 updated REST versions to 6.3
tree
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commitdiff
2018-06-04
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-06-02
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-05-31
gmungoc
JAL-2808 don't capture or report min-max for mixed...
tree
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commitdiff
2018-05-31
gmungoc
JAL-2808 pre-fill numeric inequality filter with min...
tree
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commitdiff
2018-05-28
gmungoc
Merge branch 'bug/JAL-797' into develop
tree
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commitdiff
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-05-25
gmungoc
JAL-3002 don't use fastPaint for page up/down
bug/JAL-3002fastPaintWrapped
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2992panelHeight' into releases...
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-1460_dragndropWindows' into relea...
tree
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commitdiff
2018-05-25
gmungoc
JAL-2992 simpler heuristic for available height
bug/JAL-2992panelHeight
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...
tree
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commitdiff
2018-05-25
Jim Procter
JAL-2994 add a few future release points for good measu...
feature/JAL-2994chimeraPath
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 temp variable for clearer conditional and...
bug/JAL-1460_dragndropWindows
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 javadoc
tree
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commitdiff
2018-05-25
gmungoc
JAL-2995 tooltip on fields with double-click to browse...
tree
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commitdiff
2018-05-25
gmungoc
JAL-2994 temporary patch with paths to Chimera for...
tree
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commitdiff
2018-05-24
gmungoc
JAL-2997 additional tests
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 tidied up the use of windows link file parser
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 more complete drag'n'drop debugging info and...
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 process .lnk files dragged to Jalview when...
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 new data flavor for URLs added belt-and-braces...
tree
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commitdiff
2018-05-23
gmungoc
JAL-2993 AlignFrame listen for keystrokes in OverviewPanel
tree
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commitdiff
2018-05-23
Jim Procter
fix for JAL-2991 - we could do better :/
bug/JAL-2991_exporttosvgwrapview
tree
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commitdiff
2018-05-23
gmungoc
JAL-2997 handle tab-delimited trailing column number...
tree
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commitdiff
2018-05-21
gmungoc
JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
bug/JAL-797
tree
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commitdiff
2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
tree
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commitdiff
2018-05-21
gmungoc
JAL-437 remove code duplicated by merge
features/JAL-2814ftsHelp
tree
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commitdiff
2018-05-21
gmungoc
JAL-2814 help links from PDB and Uniprot FTS panels
tree
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commitdiff
2018-05-11
gmungoc
JAL-2986 corrected findIndex for out of range residue...
tree
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commitdiff
2018-05-10
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-05-10
Jim Procter
JAL-2920 simplified logic and added corner cases for...
tree
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commitdiff
2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
tree
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commitdiff
2018-05-09
Jim Procter
Merge branch 'patch/JAL-2976_vaqua4_fallback' into...
tree
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commitdiff
2018-05-09
Jim Procter
JAL-2976 fixed bad equivalence check and implemented...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 ensure default is ‘parseImmediately=true’
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 use configured values for structure derived...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 add secondary structure & temp factor if not...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 use StructureImportSettings singleton settings...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 isParseImmediately() allows the parse() method...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 allow JmolParser to be configured before parsi...
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 unit test for save and restore PCA
features/JAL-1767pcaInProject
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 scheme DoubleMatrix type includes D and E...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
tree
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commitdiff
2018-05-07
gmungoc
JAL-2982 use configured background colour in PCA image...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 save PCA D and E vectors instead of 'details...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
tree
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commitdiff
2018-05-04
gmungoc
JAL-2975 Shift-arrow keys to rotate PCA incrementally
tree
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commitdiff
2018-05-04
gmungoc
JAL-1767 schema and Castor changes for Save PCA in...
tree
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commitdiff
2018-05-04
gmungoc
JAL-2965 graduate brightness on z-axis from centre...
tree
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commitdiff
2018-05-04
gmungoc
JAL-1767 refactorings to enable faithful restore of...
tree
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commitdiff
2018-05-04
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2976 patch NPE when trying to open Uniprot FTS
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2948 transfer features/annotation is now available...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
tree
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commitdiff
2018-05-02
gmungoc
JAL-1767 getters/setters for D and E vectors
tree
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commitdiff
2018-05-02
Jim Procter
JAL-2976 fallback to Vaqua for Macs that don’t work...
tree
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commitdiff
2018-05-01
gmungoc
JAL-1767 include d and e vectors in Matrix.copy()
tree
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commitdiff
2018-05-01
Jim Procter
JAL-2899 colouring moved from SwingWorker to a backgrou...
tree
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commitdiff
2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
tree
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commitdiff
2018-04-30
gmungoc
JAL-2965 graduated sequence point colour from back...
tree
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commitdiff
2018-04-27
gmungoc
JAL-2964 tree@linkToAllViews attribute added to project...
tree
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commitdiff
2018-04-27
gmungoc
JAL-2963 correctly dim PCA points with negative z-coord...
tree
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commitdiff
2018-04-27
gmungoc
JAL-1767 refactoring and tidying of RotatableCanvas...
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 rename run method (as not a Runnable)
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 remove Change Parameters menu from PCA panel
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 option to offer BLOSUM62 for nucleotide PCA
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 code tidying/documentation (non-functional...
tree
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commitdiff
2018-04-25
Jim Procter
Merge branch 'features/JAL-2944_openStructuresInSelecte...
tree
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commitdiff
2018-04-25
gmungoc
JAL-1767 minor field tidying prior to functional changes
tree
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commitdiff
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