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Merge branch 'develop' into features/JAL-2446NCList
[jalview.git]
/
src
/
2017-05-04
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-04
gmungoc
JAL-2505 delete and readd amended sequence feature
tree
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commitdiff
2017-05-04
gmungoc
JAL-2480 JAL-2505 guard against duplicating links
tree
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commitdiff
2017-05-04
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-03
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-03
Jim Procter
Merge branch 'features/JAL-2432_annotbypercent' into...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-1933 JAL-2501 i18n for all auto calculated descriptions
features/JAL-2432_annotbypercent
tree
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commitdiff
2017-05-03
Jim Procter
JAL-1933 show occupancy in tooltip for row
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 honour percentage checkbox when entering value...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 applet: only enable percent checkbox when...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 percentage checkbox follows threshold value...
tree
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commitdiff
2017-05-03
gmungoc
JAL-2105 Ensembl REST now at 5.0
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 recover state for ‘display percentage’ checkbox
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 simplify code
tree
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commitdiff
2017-05-02
Jim Procter
Merge branch 'bug/JAL-2424getVisibleContigs' into develop
tree
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commitdiff
2017-05-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2482 bug fix
tree
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commitdiff
2017-05-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-01
gmungoc
JAL-2489 JAL-2371 reinstate calls to
tree
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commitdiff
2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 use constant for preference token
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 consensus calculation doesn’t depend on occupa...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 desktop preferences for occupancy
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 only create and add occupancy row to alignment...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 fix: updated behaviour for SequenceGroup.findA...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 fixed behaviour for null parameters in line...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 javadoc for AnnotatedCollectionI.findAnnotations
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2432 desktop: filter/select columns by threshold...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 JAL-2432 code tidy
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2432 left justify value shown after adjusting thres...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 JAL-2432 percentile filter for select/hide...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 shade occupancy from light grey to black for...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 don’t show symbol counts under histogram ...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 occupancy row has a space below it for counts
tree
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commitdiff
2017-04-27
gmungoc
JAL-2492 use SequenceFeatures.getNonPositionalFeatures()
tree
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commitdiff
2017-04-27
gmungoc
JAL-2480 don't allow null type in SequenceFeature
tree
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commitdiff
2017-04-26
gmungoc
JAL-2490 findFeaturesAtRes with performant feature...
tree
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commitdiff
2017-04-25
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-25
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-04-25
tcofoegbu
JAL-2489 bug fix
tree
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commitdiff
2017-04-24
gmungoc
JAL-2487 remove redundant refreshGUI to minimise thread...
tree
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commitdiff
2017-04-24
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-24
gmungoc
JAL-2424 final contig now an inclusive range
bug/JAL-2424getVisibleContigs
tree
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commitdiff
2017-04-24
kiramt
JAL-2439 Fixed opposite out-by-one problem in wrapped...
tree
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commitdiff
2017-04-24
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-04-24
kiramt
JAL-2439 Fix to hidden column marker being one row...
tree
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commitdiff
2017-04-21
tcofoegbu
JAL-2485 Bug fix to filter out uniprot response header...
tree
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commitdiff
2017-04-20
gmungoc
JAL-2483 JAL-2481 findAllFeatures without scanning...
tree
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commitdiff
2017-04-19
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-19
gmungoc
JAL-2480 cache min-max score values per sequence and...
tree
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commitdiff
2017-04-19
tcofoegbu
JAL-2482 added null check
tree
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commitdiff
2017-04-19
gmungoc
JAL-2483 use SequenceFeatures to look up groups, types...
tree
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commitdiff
2017-04-18
tcofoegbu
JAL-2482 Bugfix
tree
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commitdiff
2017-04-18
gmungoc
JAL-2480 subtract from total length on deleting feature
tree
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commitdiff
2017-04-18
gmungoc
JAL-2480 test coverage / bug fixes / javadoc
tree
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commitdiff
2017-04-18
gmungoc
JAL-2480 SequenceFeaturesI encapsulates features api
tree
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commitdiff
2017-04-17
gmungoc
JAL-2446 comment updates
tree
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commitdiff
2017-04-17
gmungoc
JAL-2446 promote Range from test to src to replace...
tree
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commitdiff
2017-04-17
gmungoc
JAL-2446 tidied up / generalised binary search in Featu...
tree
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commitdiff
2017-04-17
gmungoc
JAL-2446 add call to SequenceFeatures.delete(); use...
tree
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commitdiff
2017-04-17
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-12
gmungoc
JAL-2446 getGroups, getFeatures for positional/non...
tree
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commitdiff
2017-04-11
gmungoc
JAL-2446 find feature types for one or more groups...
tree
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commitdiff
2017-04-11
tcofoegbu
Pull from develop
features/JAL-2473_set-minimium-dimensions
tree
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commitdiff
2017-04-11
tcofoegbu
JAL-2473 removed unused fields in JalviewDialog
tree
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commitdiff
2017-04-11
gmungoc
JAL-2446 getFeatureTypesForGroup() added
tree
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commitdiff
2017-04-11
gmungoc
JAL-2446 added getFeatureGroups
tree
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commitdiff
2017-04-10
tcofoegbu
Merge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux...
tree
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commitdiff
2017-04-10
tcofoegbu
JAL-2255 Bug fix
bug/JAL-2255_seq-fetcher-broken-on-linux
tree
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commitdiff
2017-04-10
tcofoegbu
Merge branch 'develop' into bug/JAL-2255_seq-fetcher...
tree
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commitdiff
2017-04-10
gmungoc
JAL-2446 SequenceFeatures.hasFeatures() added
tree
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commitdiff
2017-04-10
tcofoegbu
JAL-2473 added improvement to apply default / custom...
tree
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commitdiff
2017-04-10
gmungoc
JAL-2446 FeatureStore.isEmpty() added
tree
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commitdiff
2017-04-10
gmungoc
JAL-2361 option to save on OK of changed named colour...
tree
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commitdiff
2017-04-07
gmungoc
JAL-2446 fix size maintenance during add
tree
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commitdiff
2017-04-07
gmungoc
JAL-2446 added delete/contains to pseudo-random tests...
tree
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commitdiff
2017-04-06
gmungoc
JAL-2361 make a modified saved scheme the backout check...
tree
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commitdiff
2017-04-06
gmungoc
JAL-2446 added contains, delete, checks for inclusion...
tree
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commitdiff
2017-04-06
gmungoc
JAL-2446 pseudo-random test of findOverlaps, bug fix...
tree
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commitdiff
2017-04-05
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-05
gmungoc
JAL-2384 JAL-2371 update ResidueShader on change of...
tree
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commitdiff
2017-04-05
gmungoc
JAL-2361 simplify constructors, select unsaved but...
tree
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commitdiff
2017-04-05
gmungoc
JAL-2361 apply any saved changes to current colour...
tree
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commitdiff
2017-04-05
gmungoc
JAL-2446 various get and find methods added with test...
tree
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commitdiff
2017-04-05
gmungoc
JAL-2446 method isNonPositional() added
tree
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commitdiff
2017-04-04
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-03
gmungoc
Merge branch 'develop' into bug/JAL-2314
tree
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commitdiff
2017-04-03
gmungoc
Merge branch 'develop' into bug/JAL-2461
bug/JAL-2461
tree
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commitdiff
2017-04-03
gmungoc
JAL-2446 pseudo-random generator unit test, and fixes...
tree
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commitdiff
2017-03-31
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-03-31
gmungoc
JAL-2405 additional checks for circular reference in...
tree
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commitdiff
2017-03-31
gmungoc
Merge branch 'develop' into bug/JAL-2431splitFrameNewView
bug/JAL-2431splitFrameNewView
tree
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commitdiff
2017-03-31
gmungoc
JAL-2430 code tidy, unit test for Jmol hidden column...
tree
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commitdiff
2017-03-30
gmungoc
Merge branch 'develop' into bug/JAL-1608createGroups
bug/JAL-1608createGroups
tree
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commitdiff
2017-03-30
gmungoc
JAL-1608 leave Create Group, Remove Group menu items...
tree
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commitdiff
2017-03-30
gmungoc
JAL-2401 code and help tidy for review comments
tree
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commitdiff
2017-03-30
gmungoc
JAL-2401 don't apply lower case colour to upper case
tree
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commitdiff
2017-03-30
gmungoc
Merge branch 'develop' into bug/JAL-2399textColour
bug/JAL-2399textColour
tree
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commitdiff
2017-03-30
gmungoc
Merge branch 'develop' into bug/JAL-2346annotationChoice
tree
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commitdiff
next