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2.5.1 release branding
[jalview.git]
/
src
/
2010-04-02
jprocter
cli length limit
tree
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commitdiff
2010-04-02
jprocter
urllength limit and more efficient url construction
tree
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commitdiff
2010-04-02
jprocter
avoid occasional null exception
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commitdiff
2010-04-02
jprocter
better truncation mechanism
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commitdiff
2010-04-01
jprocter
prevent duplicate service submission links
tree
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commitdiff
2010-04-01
jprocter
reinstate submission of database Ids as well as sequenc...
tree
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commitdiff
2010-04-01
jprocter
refactored copy of groupURL mechanism into new Envision...
tree
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commitdiff
2010-04-01
jprocter
say which url was a problem when exceptions are raised.
tree
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commitdiff
2010-04-01
jprocter
new interface
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commitdiff
2010-04-01
jprocter
todo
tree
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commitdiff
2010-03-30
jprocter
group autoannotation and consensus display settings
tree
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commitdiff
2010-03-30
jprocter
bugfix for redraw when AlignPanel partially constructed...
tree
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commitdiff
2010-03-30
jprocter
name update for group autoannotation and consensus...
tree
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commitdiff
2010-03-26
jprocter
sync for cvs wierdness
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commitdiff
2010-03-26
jprocter
sync for cvs wierdness
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commitdiff
2010-03-26
jprocter
FeatureColourI removed
tree
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commitdiff
2010-03-26
jprocter
gui/debug: integrate graduated feature colour editor...
tree
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commitdiff
2010-03-26
jprocter
group autocalc annotation update logic (still broken)
tree
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commitdiff
2010-03-26
jprocter
console output to stderr and stdout, and console buffer...
tree
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commitdiff
2010-03-26
jprocter
profiles only shown for consensus row
tree
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commitdiff
2010-03-26
jprocter
fix logic for annotation label popup (still outstanding...
tree
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commitdiff
2010-03-26
jprocter
enable feature display when feature settings is opened.
tree
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commitdiff
2010-03-26
jprocter
comments
tree
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commitdiff
2010-03-26
jprocter
todo for graduated feature colours
tree
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commitdiff
2010-03-26
jprocter
commented out for release
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commitdiff
2010-03-26
jprocter
indicate which registry timed out.
tree
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commitdiff
2010-03-26
jprocter
more efficient group URL generation.
tree
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commitdiff
2010-03-22
jprocter
only do scaletofit for annotation labels
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commitdiff
2010-03-22
jprocter
ensure that all bits of annotation panel (slider, annot...
tree
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commitdiff
2010-03-22
jprocter
note to callers of adjustPanelHeight
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commitdiff
2010-03-22
jprocter
todo and sensible default setting of min/max for histog...
tree
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commitdiff
2010-03-22
jprocter
See note in Mantis bug #55537 : inconsistency between...
tree
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commitdiff
2010-03-18
jprocter
disabled simple blast parser for 2.4.1 release
tree
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commitdiff
2010-03-17
jprocter
simple query anchored blast report parser (shh!)
tree
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commitdiff
2010-03-17
jprocter
simple query anchored blast report parser (shh!)
tree
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commitdiff
2010-03-12
jprocter
1.1 compatibility
tree
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commitdiff
2010-03-11
jprocter
warning for unresolvable database source strings (or...
tree
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commitdiff
2010-03-11
jprocter
finer column label format control and new 'scale label...
tree
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commitdiff
2010-03-11
jprocter
new ROWPROPERTIES statement for setting an individual...
tree
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commitdiff
2010-03-11
jprocter
pass any warning messages to StdErr - also todo to...
tree
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commitdiff
2010-03-11
jprocter
raise a warning if column annotation gets truncated.
tree
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commitdiff
2010-03-11
jprocter
individual label format settings for each annotation...
tree
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commitdiff
2010-02-10
jprocter
todos re adding groupUrl menu item code
tree
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commitdiff
2010-02-10
jprocter
das feature fetch followed by png output fixed (bug...
tree
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commitdiff
2010-02-10
jprocter
only need to remove progress bar if fetch wasn't cancel...
tree
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commitdiff
2010-02-10
jprocter
commented out enfin/envision2 sequence submission URL...
tree
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commitdiff
2010-02-10
jprocter
allow das fetch to be blocking or non-blocking (bug...
tree
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commitdiff
2010-02-10
jprocter
progress bar hashtable entry was not being removed...
tree
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commitdiff
2010-02-09
jprocter
groupURL link prototype
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commitdiff
2010-02-09
jprocter
groupURL link preference variables
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commitdiff
2010-02-09
jprocter
todo
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commitdiff
2010-02-09
jprocter
token replacement engine for generation of urls for...
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commitdiff
2010-02-09
jprocter
qsort objects on integers
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commitdiff
2010-01-28
jprocter
quick fix for very broken checkin - see Mantis bug...
tree
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commitdiff
2010-01-28
jprocter
todo for bug #0058199
tree
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commitdiff
2010-01-28
jprocter
more rigorous annotation row content check to limit...
tree
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commitdiff
2009-11-23
jprocter
initialise current and defaultAlignFrame and debug...
tree
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commitdiff
2009-11-13
jprocter
make fileparse errors easier to debug by dumping file...
tree
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commitdiff
2009-11-09
jprocter
more spin on GA prompt
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commitdiff
2009-11-09
jprocter
no Vector(Vector) copy constructor in 1.2
tree
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commitdiff
2009-11-09
jprocter
user friendly GA and privacy statement
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commitdiff
2009-11-06
jprocter
only append score if it is not NaN
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commitdiff
2009-11-06
jprocter
properly import column selection from message
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commitdiff
2009-11-06
jprocter
potential null pointer fix
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commitdiff
2009-11-06
jprocter
setting and merging selected columns from another selec...
tree
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commitdiff
2009-11-06
jprocter
better formed generic select residue X expression
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commitdiff
2009-11-03
jprocter
pasted file contents should never be added to the recen...
tree
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commitdiff
2009-11-02
jprocter
gracefully cope with non-standard nucleotide or amino...
tree
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commitdiff
2009-10-30
jprocter
na pdb: highlight any part of a residue, not just the...
tree
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commitdiff
2009-10-30
jprocter
na pdb: recognise NA residue names
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commitdiff
2009-10-30
jprocter
na pdb: detect P backbone
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commitdiff
2009-10-27
jprocter
todo
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commitdiff
2009-10-27
jprocter
fix null pointer exception in redraw for short sequence...
tree
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commitdiff
2009-10-14
jprocter
quick fix for nullpointer in column selection when...
tree
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commitdiff
2009-10-13
jprocter
fix for pfam files with empty annotation or sequence...
tree
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commitdiff
2009-10-13
jprocter
prototype Java log window and sticky configuration
tree
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commitdiff
2009-10-13
jprocter
desktop window scaled to current window geometry, proto...
tree
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commitdiff
2009-10-13
jprocter
prompt user to enable usage stats
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commitdiff
2009-10-13
jprocter
added preferences for usage stats, questionnaire check...
tree
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commitdiff
2009-10-13
jprocter
use Pdb database source for fetching and warn user...
tree
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commitdiff
2009-10-13
jprocter
safer OOM handling when importing from XML
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commitdiff
2009-10-13
jprocter
enact on a boolean configuration option, prompting...
tree
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commitdiff
2009-10-13
jprocter
fix potential race condition
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commitdiff
2009-10-13
jprocter
documented privacy settings, versioncheck controlled...
tree
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commitdiff
2009-10-12
jprocter
ensure id string doesn't get set to the empty string...
tree
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commitdiff
2009-10-05
jprocter
immediately show memory usage
tree
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commitdiff
2009-09-22
jprocter
allow the display character below a graph to be explici...
tree
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commitdiff
2009-09-10
jprocter
fix null pointer exception when using blosum colourscheme
tree
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commitdiff
2009-09-03
jprocter
allow middle-button drag to change height of annotation...
tree
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commitdiff
2009-08-21
jprocter
1.1 compatibility
tree
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commitdiff
2009-08-21
jprocter
render sequence logo over consensus histogram
tree
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commitdiff
2009-08-21
jprocter
single-click highlights, double click selectes th assoc...
tree
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commitdiff
2009-08-21
jprocter
group consensus/conservation calculated from start...
tree
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commitdiff
2009-08-21
jprocter
viewport setting for displaying sequence logos
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commitdiff
2009-08-21
jprocter
reversed order of addition of group consensus and conse...
tree
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commitdiff
2009-08-21
jprocter
prototype make groups from selection function and shift...
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commitdiff
2009-08-21
jprocter
prototype make groups from selection function
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commitdiff
2009-08-21
jprocter
new sortbyPID for specific start/end region
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commitdiff
2009-08-21
jprocter
race condition null pointer bugfix
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commitdiff
2009-08-21
jprocter
bugfix
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commitdiff
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