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Modified output on stdout for similarity matrix.
[jalview.git]
/
src
/
2005-05-30
jprocter
Modified output on stdout for similarity matrix.
tree
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commitdiff
2005-05-27
jprocter
fixed brain interruption bug.
tree
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commitdiff
2005-05-27
amwaterhouse
ignores blank lines read in and write out
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commitdiff
2005-05-27
jprocter
right ordering for RedundancyPanel constructor
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commitdiff
2005-05-27
jprocter
added proper state check for failedJob flag.
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commitdiff
2005-05-27
jprocter
Added jobFail state
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commitdiff
2005-05-27
jprocter
better recognition of MSF files.
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commitdiff
2005-05-27
amwaterhouse
identity changed
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commitdiff
2005-05-27
amwaterhouse
Cut and paste menus added
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commitdiff
2005-05-27
amwaterhouse
Cut and paste changes
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commitdiff
2005-05-27
amwaterhouse
C&P changes
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commitdiff
2005-05-27
amwaterhouse
Check if colos are null
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commitdiff
2005-05-27
amwaterhouse
Cut and paste changes
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commitdiff
2005-05-27
amwaterhouse
Add cut and paste menus
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commitdiff
2005-05-27
amwaterhouse
CutAndPaste changed
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commitdiff
2005-05-27
jprocter
Added nicer header formatting for MSFfile output.
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commitdiff
2005-05-27
jprocter
recovered changes from v 1.84
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commitdiff
2005-05-27
amwaterhouse
Check if usrCol is null
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commitdiff
2005-05-27
amwaterhouse
New cut and paste
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commitdiff
2005-05-27
jprocter
Jpredfile now uses the PileUpfile io class.
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commitdiff
2005-05-27
jprocter
Addred GapChar string for convenient regex construction
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commitdiff
2005-05-27
jprocter
Response to bug mantis?id=8187 - some quick hacks to...
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commitdiff
2005-05-27
amwaterhouse
Remove desc for conserve graph
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commitdiff
2005-05-27
jprocter
Old MSF Format writer now renamed.
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commitdiff
2005-05-26
jprocter
fixed use of PID rather than 'Comparison' Alignment...
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commitdiff
2005-05-26
jprocter
fairly pointless catch exception error information...
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commitdiff
2005-05-26
jprocter
fixed redundancy Undo and allowed it to work on UNALIGN...
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commitdiff
2005-05-26
jprocter
bug fix in jpred client. TreeViewer display state and...
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commitdiff
2005-05-26
amwaterhouse
check for null residues
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commitdiff
2005-05-26
amwaterhouse
DOnt add Conservation graph to every residue
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commitdiff
2005-05-26
amwaterhouse
toString modified
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commitdiff
2005-05-25
amwaterhouse
reset colours added
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commitdiff
2005-05-25
amwaterhouse
more clustalx bugs fixed
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commitdiff
2005-05-25
amwaterhouse
getHexString added
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commitdiff
2005-05-25
amwaterhouse
all can threshold
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commitdiff
2005-05-25
amwaterhouse
output to textbox
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commitdiff
2005-05-25
amwaterhouse
layout changes
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commitdiff
2005-05-25
amwaterhouse
capitals
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commitdiff
2005-05-25
amwaterhouse
format changes
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commitdiff
2005-05-25
amwaterhouse
remove scrollpane
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commitdiff
2005-05-25
amwaterhouse
Capitalise
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commitdiff
2005-05-25
amwaterhouse
c&p changed
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commitdiff
2005-05-25
amwaterhouse
use getHexString in util
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commitdiff
2005-05-25
amwaterhouse
usercolours changed
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commitdiff
2005-05-25
amwaterhouse
output text to textbox
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commitdiff
2005-05-25
amwaterhouse
all colours can threshold
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commitdiff
2005-05-25
amwaterhouse
selectiongroup could be null
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commitdiff
2005-05-25
amwaterhouse
saves usercolours
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commitdiff
2005-05-25
amwaterhouse
formatforoutput never used
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commitdiff
2005-05-25
amwaterhouse
output values to textbox
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commitdiff
2005-05-25
amwaterhouse
toString method added
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commitdiff
2005-05-25
amwaterhouse
XML schema changes
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commitdiff
2005-05-25
amwaterhouse
usercolourscheme changed
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commitdiff
2005-05-25
amwaterhouse
formatting changes
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commitdiff
2005-05-25
amwaterhouse
all colours can threshold
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commitdiff
2005-05-25
amwaterhouse
usercolours changed
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commitdiff
2005-05-25
amwaterhouse
remove comment
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commitdiff
2005-05-25
amwaterhouse
can output details to textbox
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commitdiff
2005-05-25
jprocter
added jalview.browser property so a linux user can...
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commitdiff
2005-05-25
jprocter
doh - compile before commit!
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commitdiff
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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commitdiff
2005-05-25
jprocter
Improved consistency between JPredWS and MsaWS
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commitdiff
2005-05-25
jprocter
base class for web service clients.
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commitdiff
2005-05-24
jprocter
title parameter for single sequence prediction.
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commitdiff
2005-05-24
jprocter
Added more firePropertyChange calls - mainly for sequen...
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commitdiff
2005-05-24
jprocter
extended the UpdatePlaceholders to check for any new...
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commitdiff
2005-05-24
jprocter
added PropertyChangeListeners for alignviewport.alignme...
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commitdiff
2005-05-24
amwaterhouse
remove .
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commitdiff
2005-05-24
amwaterhouse
URL getresource adds %20 for spaces. Use user.dir instead
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commitdiff
2005-05-24
amwaterhouse
filefilter might not be JalviewFileFilter
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commitdiff
2005-05-24
amwaterhouse
equalsIgnoreCase
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commitdiff
2005-05-24
amwaterhouse
setDefaultFileFormat
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commitdiff
2005-05-24
amwaterhouse
replace get with elementAt
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commitdiff
2005-05-24
amwaterhouse
setgraphics black
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commitdiff
2005-05-24
amwaterhouse
setgraphics black
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commitdiff
2005-05-24
jprocter
several ordering bug fixes.
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commitdiff
2005-05-23
jprocter
Added PadGaps and made treeSortMenu dynamic (it gets...
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commitdiff
2005-05-23
jprocter
added some assertions and rangechecks for insert/delete...
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commitdiff
2005-05-23
jprocter
added getSequencesInOrder (part of refactor from AlignP...
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commitdiff
2005-05-23
jprocter
editMenuPadGaps and sortByTree/sort items
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commitdiff
2005-05-23
jprocter
fixed window title names for prediction on MSA or Sequence.
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commitdiff
2005-05-23
amwaterhouse
colour groups by text colour
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commitdiff
2005-05-23
amwaterhouse
make sure fonts are not null
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commitdiff
2005-05-23
amwaterhouse
remove separator
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commitdiff
2005-05-23
amwaterhouse
new savestate method
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commitdiff
2005-05-23
jprocter
Ugly but improved recovery of sequence names, starts...
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commitdiff
2005-05-23
jprocter
bug fix for wierdness retrieving QUERY sequence index.
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commitdiff
2005-05-23
amwaterhouse
boxes, colour text, show text added to groups
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commitdiff
2005-05-23
amwaterhouse
historyitem added
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commitdiff
2005-05-22
jprocter
include MsaWS ordering but not perfect (undo destroys...
tree
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commitdiff
2005-05-22
jprocter
Added alignment ordering option to 'Sort by' and implem...
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commitdiff
2005-05-22
jprocter
later version of client-side WSDL2Java generated simple...
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commitdiff
2005-05-20
jprocter
Semiworking generic MSA client
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commitdiff
2005-05-20
jprocter
added placeholder indicators and menu item
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commitdiff
2005-05-20
jprocter
Various sort methods added and bugs fixed (coping with...
tree
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commitdiff
2005-05-20
amwaterhouse
DEFAULT_FILE_FORMAT added
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commitdiff
2005-05-20
jprocter
sequence place holder reveal menu item.
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commitdiff
2005-05-20
jprocter
added tree node property for sequence placeholders.
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commitdiff
2005-05-20
amwaterhouse
if fullid shown, resize fonts
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commitdiff
2005-05-20
amwaterhouse
startup file added
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commitdiff
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