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JAL-1919 PDBfile and JmolParser refactor
[jalview.git]
/
src
/
2016-03-03
tcofoegbu
JAL-1919 PDBfile and JmolParser refactor
tree
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commitdiff
2016-02-26
tcofoegbu
develop merge
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commitdiff
2016-02-26
tcofoegbu
JAL-2009 reverted 'RES NUM' feature back to 'RESNUM'
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commitdiff
2016-02-26
tcofoegbu
JAL-1994 updated implementation for broken tests
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commitdiff
2016-02-26
tcofoegbu
JAL-1994 fix for broken tests
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commitdiff
2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
tree
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commitdiff
2016-02-23
tcofoegbu
develop merge
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commitdiff
2016-02-23
tcofoegbu
JAL-1720 renamed Structure Chooser filters according...
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commitdiff
2016-02-22
tcofoegbu
JAL-1720 JAL-2002 improvement for 'uniprot coverage...
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commitdiff
2016-02-22
tcofoegbu
JAL-1944 bugfix for error when exporting hidden sequenc...
tree
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commitdiff
2016-02-19
tcofoegbu
JAL-2009 Codes to enable storing inserted residues...
tree
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commitdiff
2016-02-09
tcofoegbu
merge develop
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commitdiff
2016-02-09
tcofoegbu
JAL-1976 catch and handle OOM Error
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commitdiff
2016-02-09
tcofoegbu
JAL-1976 Added progress indicators for HTML_SVG and...
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commitdiff
2016-02-09
tcofoegbu
JAL-1975 updated image export pipeline to produce more...
tree
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commitdiff
2016-02-09
tcofoegbu
JAL-1957 deleted stale comment
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commitdiff
2016-02-09
tcofoegbu
merge
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commitdiff
2016-02-09
tcofoegbu
JAL-1957 enabled multi-chain mapping and highlight...
tree
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commitdiff
2016-02-05
gmungoc
JAL-2006 scale even very small score ranges to a usable...
tree
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commitdiff
2016-02-04
gmungoc
JAL-2005 added (stable) sort methods parameterised by
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commitdiff
2016-02-04
gmungoc
JAL-599 bug fixed so array of visible types is populated
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commitdiff
2016-01-29
tcofoegbu
merge from develop
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commitdiff
2016-01-29
tcofoegbu
JAL-1979 refactor out duplicated similar block of code...
tree
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commitdiff
2016-01-27
tcofoegbu
JAL-1479 fixed off-by-one error in SIFTS mapping output...
tree
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commitdiff
2016-01-26
tcofoegbu
develop merge
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commitdiff
2016-01-26
tcofoegbu
JAL-1999 JAL-1479 implemented configurable fail-safe...
tree
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commitdiff
2016-01-25
tcofoegbu
JAL-1998 bugfix for division by zero error for PDB...
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1479 JAL-1979 bugfix to check entire annotation...
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commitdiff
2016-01-21
tcofoegbu
JAL-1479 JAL-1979 updated the modified-aminoacid triple...
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
tree
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commitdiff
2016-01-11
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-01-11
gmungoc
JAL-1989 additional ways to 'mirror' show/hide columns...
tree
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commitdiff
2016-01-11
tcofoegbu
JAL-1990 added a progress indicator for Structure Choos...
tree
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commitdiff
2016-01-11
tcofoegbu
merge
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commitdiff
2016-01-11
tcofoegbu
JAL-1991 bug fix for some flat-file printers to check...
tree
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commitdiff
2016-01-11
gmungoc
JAL-1989 map hidden column ranges
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commitdiff
2016-01-11
gmungoc
JAL-1989 more unit tests and encapsulation for ColumnSe...
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commitdiff
2016-01-07
tcofoegbu
merge
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commitdiff
2016-01-07
tcofoegbu
JAL-1479 implemented timestamp based caching of SIFTS...
tree
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commitdiff
2015-12-09
Jim Procter
JAL-1982 hotfix to prevent NPE with applet launch on...
tree
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commitdiff
2015-12-03
gmungoc
JAL-1827 code and comment tidy up
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commitdiff
2015-12-02
gmungoc
JAL-1827 refactored to handle missing residues better
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commitdiff
2015-12-02
gmungoc
JAL-1827 added overloaded method for convenience
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 refactored DBRef fetching code to StructureCho...
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 applet build debug
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 bugfix after decoupling SIFTS preference settings
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commitdiff
2015-11-23
tcofoegbu
JAL-1479 commented out DBRef fetching code from SIFTS...
tree
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commitdiff
2015-11-17
tcofoegbu
JAL-1479 Refactored Sifts configuration preference...
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commitdiff
2015-11-16
tcofoegbu
JAL-1967 JAL-1479 refactored sequence<->structure mappi...
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commitdiff
2015-11-13
tcofoegbu
JAL-1479 added transfer of residue annotation for SIFTS...
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commitdiff
2015-11-11
tcofoegbu
JAL-1479 JAL-1957 Added code to enable simultaneous...
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commitdiff
2015-11-11
tcofoegbu
merge
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commitdiff
2015-11-11
tcofoegbu
JAL-1957 JAL-1479 Further optimisation of SIFTs Client...
features/JAL-1479_SIFTS-mapping
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commitdiff
2015-11-10
tcofoegbu
JAL 1960 added code to restrict structure chooser to...
tree
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commitdiff
2015-11-05
tcofoegbu
JAL-1479 SiftClient house keeping
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commitdiff
2015-11-05
tcofoegbu
JAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
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commitdiff
2015-11-02
tcofoegbu
JAL-1955 Uniprot sequence fetcher refactor
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commitdiff
2015-10-30
Jim Procter
JAL-1954 rejigged PFAMFile to split on ‘\t’ if no space...
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commitdiff
2015-10-29
tcofoegbu
JAL-1926 JAL-1479 updated PDBfile fetcher to add source...
tree
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commitdiff
2015-10-28
tcofoegbu
JAL-1479 added support for SIFTs mapping output viewing...
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commitdiff
2015-10-28
tcofoegbu
JAL-1952 bugfix
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commitdiff
2015-10-28
tcofoegbu
JAL-1887 JAL-1479 bugfix for incorrect start/end for...
tree
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commitdiff
2015-10-23
gmungoc
JAL-1943 don't try to unmarshal non-xml files in V1...
tree
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commitdiff
2015-10-22
tcofoegbu
JAL-1479 added basic support for SIFTs mapping - more...
tree
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commitdiff
2015-10-22
tcofoegbu
JAL-1479 implemented preferences for SIFTs / Needleman...
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commitdiff
2015-10-22
tcofoegbu
JAL-1942 JAL-1479 DBRefFetcher refactor
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commitdiff
2015-10-22
gmungoc
JAL-1932 TrimRegionCommand bug fix, tests and purge...
tree
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commitdiff
2015-10-15
tcofoegbu
JAL-1479 refactored SequenceI interface - changed getDB...
tree
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commitdiff
2015-10-15
Jim Procter
JAL-1923 formatting
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commitdiff
2015-10-15
Jim Procter
JAL-1923 add groups to codon-complement and notify...
tree
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commitdiff
2015-10-15
Jim Procter
JAL-1923 fix: don’t add group twice
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commitdiff
2015-10-14
tcofoegbu
JAL-1926 created interface for DBRefEntry
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commitdiff
2015-10-14
tcofoegbu
JAL-1926 added supporting model changes to enable savin...
tree
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commitdiff
2015-10-13
tcofoegbu
JAL-1479 added SIFTS XSD and generated JAXB bindings...
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 add licensing
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commitdiff
2015-10-08
Jim Procter
JAL-1894 organise imports
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commitdiff
2015-10-08
tcofoegbu
merge
tree
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commitdiff
2015-10-07
Jim Procter
JAL-1894 source formatting
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commitdiff
2015-10-07
Jim Procter
JAL-1894 organise imports
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commitdiff
2015-10-07
tcofoegbu
JAL-1912 added documentation
features/JAL-1912_biojson-per-sequence-annotation
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commitdiff
2015-10-07
Jim Procter
JAL-1912 formatting
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commitdiff
2015-10-07
Jim Procter
JAL-1912 javadoc for adjustForAlignment stating current...
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commitdiff
2015-10-07
Jim Procter
JAL-1912 efficiency: look up sequenceMapping once per...
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commitdiff
2015-10-07
Jim Procter
Merge branch 'features/JAL-1912_biojson-per-sequence...
tree
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commitdiff
2015-10-05
tcofoegbu
JAL-1912 house keeping
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commitdiff
2015-10-05
tcofoegbu
JAL-1912 added null check for SequenceMapping variable...
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commitdiff
2015-10-05
gmungoc
JAL-1812 set/return currentAlFrame for Groovy in headle...
tree
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commitdiff
2015-10-05
Jim Procter
Merge branch 'develop' into features/JAL-1912_biojson...
tree
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commitdiff
2015-10-05
gmungoc
JAL-1684 JAL-1452 new applet parameters defaultColourNuc
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commitdiff
2015-10-05
tcofoegbu
JAL-1908 bugfix
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commitdiff
2015-10-05
tcofoegbu
JAL-1912 updated AnnotationDisplaySettingPojo
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commitdiff
2015-10-02
gmungoc
JAL-1815 restore split frame geometry including horizon...
tree
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commitdiff
2015-10-02
Jim Procter
JAL-1900 JAL-1625 disable iconify button for internal...
tree
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commitdiff
2015-10-01
tcofoegbu
JAL-1912 Double.NaN breaks JSON serialization - added...
tree
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commitdiff
2015-10-01
tcofoegbu
JAL-1912 refactor annotation refsequence assignemnt...
tree
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commitdiff
2015-09-30
tcofoegbu
house keeping
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commitdiff
2015-09-30
tcofoegbu
JAL-1860 house keeping
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commitdiff
2015-09-30
tcofoegbu
JAL-1852 made disabling querying of unpublished PDB...
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commitdiff
2015-09-30
tcofoegbu
JAL-1912 added support of tcoffee annotation and other...
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commitdiff
2015-09-30
tcofoegbu
JAL-1852 disable querying of unpublished PDB entries...
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commitdiff
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