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JAL-3878 Create pollable task and executor it can be run with.
[jalview.git]
/
test
/
jalview
/
analysis
/
2021-10-06
Mateusz Warowny
JAL-3899 Refactor sequence de/uniquification.
tree
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commitdiff
2020-12-14
Jim Procter
Merge branch 'Jalview-JS/develop' into merge_js_develop
tree
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commitdiff
2020-06-30
gmungoc
JAL-3446 unused imports removed
tree
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commitdiff
2020-06-09
BobHanson
JAL-3446 from JAL-3253-applet SequenceFetcher.getInsta...
tree
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commitdiff
2020-06-05
BobHanson
JAL-3446 AlignmentSorter/Test fixed for instance
tree
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commitdiff
2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet Cache applicationProperti...
tree
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commitdiff
2020-05-18
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2020-04-23
Jim Procter
Merge branch 'develop' into alpha/JAL-3362_Jalview_212_...
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-12-12
Jim Procter
JAL-2305 moved failing CrossRef tests to Functional_Fai...
tree
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-08-13
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2019-08-09
gmungoc
JAL-3187 removal of variant feature (non-virtual) trans...
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-07-10
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
tree
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commitdiff
2019-06-17
gmungoc
JAL-3187 update alignAs code and unit tests for 'shared...
tree
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commitdiff
2019-06-07
gmungoc
JAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
tree
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commitdiff
2019-06-04
Jim Procter
Merge branch 'develop' into developtomchmmer
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-03-12
gmungoc
JAL-1270 missing 'alwaysRun=true' added to setup/teardown
tree
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commitdiff
2019-03-11
gmungoc
JAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test...
tree
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commitdiff
2019-03-07
gmungoc
Merge branch 'feature/JAL-3205symmetricCalc' into develop
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-2620a...
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-2839findWi...
tree
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commitdiff
2019-03-05
gmungoc
JAL-3205 added a delta parameter to Matrix.equals()
feature/JAL-3205symmetricCalc
tree
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commitdiff
2019-03-04
gmungoc
JAL-3205 worked examples in unit test for symmetric...
tree
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commitdiff
2019-03-03
gmungoc
JAL-3205 faster calculation with symmetric score matrix
tree
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commitdiff
2019-02-28
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into merge...
tree
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commitdiff
2019-02-27
gmungoc
JAL-3202 discard zero percentages in extracted profile
tree
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commitdiff
2019-02-20
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into feature...
tree
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commitdiff
2019-02-04
hansonr
Test suite try/catch reverted
tree
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commitdiff
2019-02-04
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into Jalview...
tree
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commitdiff
2019-02-04
gmungoc
JAL-3143 update unit test for ID -> id change
feature/JAL-3143ensemblJSON
tree
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commitdiff
2019-01-29
hansonr
test package fix for List<DBRefEntry> DBrefs (untested)
tree
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
tree
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commitdiff
2018-07-23
Jim Procter
Merge branch 'features/mchmmer' into merge/wsinterfaces...
tree
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commitdiff
2018-06-27
hansonr
JAL-3032 just the changes pulled already
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-05
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-06-04
gmungoc
JAL-3019 correctly form toRange of 'traversed' MapList
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 remove Change Parameters menu from PCA panel
tree
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commitdiff
2018-03-26
gmungoc
JAL-2939 pull up set/IsNormalise[HMM]SequenceLogo
tree
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commitdiff
2018-03-20
gmungoc
JAL-2629 InformationThread.findOrCreateAnnotation and...
tree
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commitdiff
2018-03-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-03-19
gmungoc
JAL-2620 parse genetic code tables from standard file...
tree
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commitdiff
2018-03-16
gmungoc
JAL-2620 alternative genetic code translation tables
tree
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commitdiff
2018-03-16
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2018-03-15
gmungoc
JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
tree
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commitdiff
2018-03-14
gmungoc
JAL-2933 pass viewport in Finder constructor, find...
bug/JAL-2839findWithHidden
tree
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commitdiff
2018-03-14
gmungoc
JAL-2933 gui and applet Finder hold a FinderI per viewport
tree
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commitdiff
2018-03-13
gmungoc
JAL-2839 additional test case
tree
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commitdiff
2018-03-13
gmungoc
JAL-2839 refactored analysis.Finder and tests
tree
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commitdiff
2018-03-09
gmungoc
JAL-2839 Finder refactoring prior to fixing the defect
tree
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commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
tree
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commitdiff
2018-02-22
gmungoc
JAL-2629 tidy unit tests, constants etc
tree
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commitdiff
2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-02-09
gmungoc
JAL-2789 avoid using transcript (with no UTR) as CDS...
bug/JAL-2666
tree
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commitdiff
2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
tree
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commitdiff
2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
tree
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commitdiff
2018-02-05
gmungoc
Merge branch 'spikes/mungo' into trialMerge
tree
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commitdiff
2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
tree
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commitdiff
2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
tree
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commitdiff
2018-01-30
gmungoc
JAL-2898 show 'stop_gained' variants on peptide sequences
tree
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commitdiff
2018-01-30
gmungoc
JAL-2897 generate peptide variants for synonymous codon...
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 Remove getVisibleBlocksIterator call
tree
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commitdiff
2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
tree
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commitdiff
2017-10-27
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-10-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-10-26
Jim Procter
Merge branch 'features/JAL-2685pairwiseSeqLimits' into...
tree
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commitdiff
2017-10-25
Jim Procter
Merge branch 'bug/JAL-2617mappedStopCodon' into develop
tree
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commitdiff
2017-10-05
gmungoc
JAL-2738 update spikes/mungo
tree
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commitdiff
2017-10-05
gmungoc
JAL-2755 transfer chromosomal reference from transcript...
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 finish with iterators for now
tree
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commitdiff
2017-09-28
kiramt
JAL-2647 more iterators
tree
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commitdiff
2017-09-26
gmungoc
JAL-2738 JAL-2154 add DBRef from transcript to synthesi...
tree
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commitdiff
2017-09-12
gmungoc
JAL-2727 first pass of test of memory recovery on close all
tree
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commitdiff
2017-09-04
gmungoc
JAL-2617 unit tests for CDS + stop codon, CDS with...
bug/JAL-2617mappedStopCodon
tree
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commitdiff
2017-08-30
gmungoc
JAL-2685 tweaks to output spacing, updated TestAlignSeq...
tree
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commitdiff
2017-08-28
tzvanaalten
JAL-2629 add option to set HMM Logo letter height to...
tree
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commitdiff
2017-08-18
TZVanaalten
JAL-2668 add tests for HMMER commands, annotation and io
tree
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commitdiff
2017-08-09
TZVanaalten
JAL-2629 disable AAFrequencyTest compilation error
tree
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commitdiff
2017-07-27
TZVanaalten
JAL-2629 moved HMM storage location to placeholder...
tree
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commitdiff
2017-07-12
TZVanaalten
test HMM annotaTION
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
tree
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commitdiff
2017-05-25
gmungoc
JAL-2557 removal of Sequence.sequenceFeatures
tree
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commitdiff
2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
tree
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commitdiff
2017-05-22
gmungoc
JAL-2544 unit tests for sort by feature score
tree
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commitdiff
2017-05-19
gmungoc
JAL-2490 performant lookup of features for sorting
tree
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commitdiff
2017-05-19
gmungoc
JAL-2505 unit test for sort by feature density, Javadoc
tree
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commitdiff
2017-05-16
gmungoc
JAL-2505 set helix number as feature group in SequenceF...
tree
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commitdiff
2017-05-15
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-09
gmungoc
JAL-2403 use preferred factory method to create score...
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
tree
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commitdiff
2017-05-02
Jim Procter
JAL-2424 fixme’s removed
tree
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commitdiff
2017-05-02
Jim Procter
JAL-2424 update assert to correct width for normalising...
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commitdiff
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