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JAL-3748 reusable assert to trace specific issues with recovering the correct Sequenc...
[jalview.git]
/
test
/
jalview
/
datamodel
/
2017-11-21
kiramt
JAL-2759 unit tests for VisibleContigsIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 improvements to speed up synchronisation;...
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 tidy
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Update tests
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Convert reveal to use cursor
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 HiddenColumnsCursor tests
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 spike updated with latest
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 support filter/colour by nested attribute...
tree
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commitdiff
2017-11-13
gmungoc
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into
tree
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commitdiff
2017-11-13
kiramt
JAL-2759 convert findColumnPosition to use cursor
tree
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commitdiff
2017-11-10
gmungoc
JAL-2829 fixes and unit tests
bug/JAL-2829deleteCharsWithGaps
tree
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commitdiff
2017-11-10
gmungoc
JAL-2829 unit tests for failing cases
tree
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commitdiff
2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-06
Jim Procter
Merge branch 'bug/JAL-2541cutRelocateFeatures' into...
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 spike updated with latest
tree
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commitdiff
2017-10-31
gmungoc
JAL-2792 test updated for 3 column table
tree
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
tree
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commitdiff
2017-10-26
gmungoc
JAL-2792 html table for Feature Details report
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2682parseId' into develop
tree
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commitdiff
2017-10-11
gmungoc
JAL-2772 check array bounds for sequence access
bug/JAL-2772pdbArrayBounds
tree
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commitdiff
2017-10-11
gmungoc
Merge branch 'bug/JAL-2742' into develop
tree
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commitdiff
2017-10-11
gmungoc
JAL-2742 set HiddenColumns null for no hidden coluns...
tree
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commitdiff
2017-10-11
kiramt
JAL-2742 test updates following review
tree
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commitdiff
2017-10-11
kiramt
JAL-2742 minor test updates following review
tree
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commitdiff
2017-10-06
kiramt
JAL-2674 Last moves to iterators
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 more adjustments to locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 Simplify locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-03
kiramt
JAL-2647 unit test
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 testing
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 Tidies
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 finish with iterators for now
tree
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commitdiff
2017-09-29
kiramt
JAL=2674 Removed getHiddenColumnsCopy
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 reverted attempt at visible regions iterator
tree
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commitdiff
2017-09-28
kiramt
JAL-2647 more iterators
tree
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commitdiff
2017-09-27
kiramt
JAL-2674 Removing most calls to getHiddenColumnsCopy
tree
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commitdiff
2017-09-26
kiramt
JAL-2742 uncomment test
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 uncomment test
tree
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commitdiff
2017-09-26
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2742'...
tree
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commitdiff
2017-09-26
kiramt
JAL-2742 CigarArray constructor unit test
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 Unit test for new copy constructor.
tree
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commitdiff
2017-09-26
kiramt
JAL-2647 Added iterators and associated tests and bench...
tree
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commitdiff
2017-09-25
gmungoc
JAL-2525 return no features if none matches ontology...
tree
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commitdiff
2017-09-22
kiramt
JAL-2674 add bounds to findHiddenRegionPositions
tree
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commitdiff
2017-09-21
kiramt
JAL-2674 unit test for gapBitSet
tree
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commitdiff
2017-09-21
kiramt
JAL-2674 Reset tests
tree
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commitdiff
2017-09-20
kiramt
JAL-2674 fix up interface of locateVisibleBoundsOfSequence
tree
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commitdiff
2017-09-20
kiramt
JAL-2674 Transferred updated unit tests from first...
tree
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commitdiff
2017-09-14
gmungoc
JAL-2541 unit test added
tree
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commitdiff
2017-09-14
gmungoc
JAL-2541 length check in deleteChars (redoing lost...
tree
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commitdiff
2017-09-14
gmungoc
JAL-2541 working Cut/Undo with feature relocation
tree
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commitdiff
2017-09-14
gmungoc
JAL-2541 revised cut with features (work in progress)
tree
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commitdiff
2017-08-23
gmungoc
JAL-2481 a smidgin more test coverage of findFeatures
tree
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commitdiff
2017-08-23
gmungoc
JAL-2682 non-regex sequence id parsing, and tests added
tree
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
tree
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commitdiff
2017-07-19
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 additions to unit test, check for negative...
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 prevent overview box move up over hidden first...
tree
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commitdiff
2017-06-30
gmungoc
JAL-2505 correct handling of change of feature type
tree
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commitdiff
2017-06-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-29
kiramt
JAL-2597 Fix and unit test
bug/JAL-2597
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-24
gmungoc
JAL-2547 fix case of gap followed by enclosing contact...
tree
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commitdiff
2017-06-22
gmungoc
JAL-2481 JAL-2593 JAL-2526 further optimisation of...
tree
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commitdiff
2017-06-22
gmungoc
JAL-2480 simpler and safer test to avoid adding duplicates
tree
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commitdiff
2017-06-21
gmungoc
JAL-2480 tidy generic initialisations, SequenceFeatures...
tree
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commitdiff
2017-06-15
gmungoc
Merge branch 'bug/JAL-2386groupConservationColouring...
tree
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commitdiff
2017-06-14
gmungoc
JAL-2598 Sequence.getSequence return a copy of the...
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 correct boundary conditions for sequence left...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2386 JAL-2570 use ResidueShader copy constructor...
bug/JAL-2386groupConservationColouring
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 Refactor HiddenColumns to use ArrayList instea...
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 More HiddenColumns refactoring. Tests passing.
tree
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commitdiff
2017-06-08
gmungoc
JAL-2526 cache first/last residue column positions...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Further refactoring (still incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 More refactoring (incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Hidden columns regions can be output to string...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 updated HiddenColumns::findHiddenRegionPositio...
tree
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commitdiff
2017-06-07
gmungoc
JAL-2386 ensure group conservation shading is applied...
tree
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commitdiff
2017-06-05
gmungoc
JAL-2480 remove redundant method, further test coverage
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2526sequenceCursor' into
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
features/JAL-2526sequenceCursor
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 get bitset representing hidden columns
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 method taking a BitSet for hiding columns
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 fixed broken asserts for SequenceI.getInsertio...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 SequenceI.getInsertionsAsBits for convenient...
tree
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commitdiff
2017-06-02
gmungoc
JAL-2526 additional tests for findPosition with/without...
tree
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commitdiff
2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'features/JAL-2446NCList' into features...
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-30
gmungoc
JAL-2570 don't zap group colour scheme when mapping...
tree
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commitdiff
2017-05-30
gmungoc
JAL-2526 first draft of findIndex/findPosition with...
tree
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commitdiff
2017-05-29
gmungoc
JAL-2526 Sequence.findPositions to get residue position...
tree
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commitdiff
2017-05-26
gmungoc
JAL-2480 move ContiguousI and Range to jalview.datamodel
tree
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commitdiff
2017-05-25
gmungoc
JAL-2557 removal of Sequence.sequenceFeatures
tree
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commitdiff
2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
tree
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commitdiff
2017-05-24
gmungoc
JAL-2505 make SequenceFeature type, begin, end, feature...
tree
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commitdiff
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