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JAL-3829 use sequence dependent constructor for structure chooser query engine testing
[jalview.git] / test / jalview / io /
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-20 gmungocJAL-2897 updated unit test for code change features/JAL-1793VCF tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2891 clear all windows always beforeTest... tree | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... tree | commitdiff
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon... tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2018-01-09 gmungocJAL-2843 test roundtrip of feature colours and filters... tree | commitdiff
2018-01-09 gmungocJAL-2843 unit tests for writing filters to Jalview... tree | commitdiff
2017-12-19 Jim ProcterJAL-2880 disabled non-functional test - Jmol parser... tree | commitdiff
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview... tree | commitdiff
2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest tree | commitdiff
2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF tree | commitdiff
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... tree | commitdiff
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement... tree | commitdiff
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... tree | commitdiff
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added tree | commitdiff
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) tree | commitdiff
2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map tree | commitdiff
2017-11-07 gmungocJAL-2069 update spike branch with latest tree | commitdiff
2017-11-06 gmungocJAL-2820 include attribute value used for feature colou... tree | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest tree | commitdiff
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching... tree | commitdiff
2017-10-20 gmungocPush 1793 latest to spike branch tree | commitdiff
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible tree | commitdiff
2017-10-09 gmungocJAL-2738 assertion for derived protein variant added tree | commitdiff
2017-10-09 gmungocJAL-2738 remove commented code, unit test coverage tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader tree | commitdiff
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry tree | commitdiff
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy tree | commitdiff
2017-09-26 kiramtJAL-2674 Unit test for new copy constructor. tree | commitdiff
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies tree | commitdiff
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene tree | commitdiff
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever... tree | commitdiff
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1... tree | commitdiff
2017-08-22 Jim ProcterJAL-2681 cross-ref selection for targeted debugging tree | commitdiff
2017-08-22 Jim ProcterJAL-2681 source formatting tree | commitdiff
2017-08-22 gmungocJAL-2680 remove all mappings in test teardown tree | commitdiff
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-09 Jim ProcterJAL-1270 testProps should also enable debug logging tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-31 gmungocJAL-2631 test updated for added kd graduated feature... tree | commitdiff
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 tree | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... tree | commitdiff
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing. tree | commitdiff
2017-06-02 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-01 Jim ProcterMerge branch 'features/JAL-1648_cache_user_inputs'... tree | commitdiff
2017-05-31 tcofoegbuFixed failing tests tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures tree | commitdiff
2017-05-25 Jim ProcterMerge branch 'develop' into features/JAL-1648_cache_use... tree | commitdiff
2017-05-25 gmungocJAL-2505 removed SequenceFeature constructor JAL-1641... tree | commitdiff
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group... tree | commitdiff
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... tree | commitdiff
2017-05-23 gmungocJAL-2490 test coverage for printGffFormat before refact... tree | commitdiff
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... tree | commitdiff
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct... tree | commitdiff
2017-05-22 gmungocJAL-2490 add non-positional feature case to test prior... tree | commitdiff
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-16 gmungocJAL-2505 additional tests/asserts prior to refactoring tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore... tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... tree | commitdiff
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of... tree | commitdiff
2017-05-09 tcofoegbuJAL-2520 unit test for improvement to download structur... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm... tree | commitdiff
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-04 tcofoegbuJAL-1648 resolved CR-JAL-41 review issues tree | commitdiff
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... tree | commitdiff
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... tree | commitdiff
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... tree | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... tree | commitdiff
2017-04-27 gmungocJAL-2492 use SequenceFeatures.getNonPositionalFeatures() tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h... tree | commitdiff
2017-04-26 kiramtJAL-2388 Update to hidden columns/column selection... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 edited unit test code comment tree | commitdiff
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