JAL-3368 removed parsing web colours (now on a separate branch)
[jalview.git] / test / jalview / io /
2019-08-28 hansonrJAL-3253-applet JAL-3423
2019-08-28 hansonrJAL-3253-applet JAL-3423 TestNG/Win
2019-05-21 gmungocJAL-3253-applet disabling button size setting by applet...
2019-05-21 gmungocJAL-3253 code tidies and tweaks to Desktop
2019-05-17 hansonrJalview-JS/JAL-3253-applet adding more applet parameter...
2019-05-15 gmungocJAL-3253-applet feature parameter processing fixed
2019-05-15 gmungocJAL-3253 ApplicationSingletonProvider replaces Instance
2019-05-10 hansonrJAL-3253 jalview.bin.Instance streamlining
2019-05-10 hansonrJAL-3253 jalview.bin.Instance handles all singleton...
2019-05-09 hansonrJalview-JS/JAL-3253-applet does not recognize \r\n...
2019-05-09 hansonrJAL-3253/JAL-3258 FileLoader fix for use of file.separator
2019-05-09 hansonrJAL-3253/JAL-3257
2019-05-08 hansonrJAL-3253 preliminary static fixes for JavaScript part 2
2019-05-08 hansonrJAL-3253 preliminary static fixes for JavaScript
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-12 gmungocJAL-1270 missing 'alwaysRun=true' added to setup/teardown
2019-03-11 gmungocJAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test...
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into...
2019-03-01 gmungocMerge branch 'bug/JAL-2791exportFilteredFeature' into...
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b...
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211
2019-02-22 gmungocJAL-2738 don't set AF as feature score
2019-02-04 hansonrfixing array processing order
2019-01-29 hansonrtest package fix for List<DBRefEntry> DBrefs (untested)
2019-01-28 Ben SoaresJAL-3141 fixed test
2019-01-21 Ben SoaresJAL-3141 Fixed tests for new placement of suffix after...
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur...
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
2019-01-09 Ben SoaresJAL-3141 removed redundant method to tests
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug...
2018-12-19 gmungocJAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature
2018-12-06 gmungocMerge branch 'develop' into Jalview-BH/JAL-3026-JAL...
2018-12-03 gmungocJAL-3063 Castor removed from codebase
2018-11-15 gmungocJAL-2344 unit test updated for code change
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server
2018-11-05 Ben SoaresJAL-3141 Slightly improved message and more thorough...
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing...
2018-10-31 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into... feature/JAL-3144noJTree
2018-10-29 gmungocJAL-3144 SequenceFetcher without JDatabaseTree
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH...
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating...
2018-09-27 gmungocJAL-2791 refactored Export Features to apply all visibi...
2018-09-21 gmungocJAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch
2018-08-21 gmungocJAL-3032 MCview package renamed mc_view in test classes
2018-08-17 gmungocJAL-3038 unit test updates for JalviewJS workaround...
2018-08-03 Ben SoaresJAL-3061
2018-08-02 Ben SoaresJAL-3053
2018-07-31 bsoaresStockholm file for test
2018-07-20 gmungocJAL-3048 test updated for AlignExportSettings changes
2018-07-18 Jim ProcterJAL-3048 update tests for alignment export bean refactoring
2018-07-18 Jim ProcterJAL-3048 test for successful save with refactored saveA...
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2...
2018-05-24 gmungocJAL-2997 additional tests
2018-05-23 gmungocJAL-2997 unit test
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-05-07 gmungocJAL-1767 unit test for save and restore PCA features/JAL-1767pcaInProject
2018-04-06 Jim Procterfailing test for JAL-2223
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2...
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-02-20 gmungocJAL-2897 updated unit test for code change features/JAL-1793VCF
2018-02-07 Jim ProcterJAL-2780 JAL-2891 clear all windows always beforeTest...
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and...
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon...
2018-01-10 gmungocJAL-1793 update spike branch to latest
2018-01-09 gmungocJAL-2843 test roundtrip of feature colours and filters...
2018-01-09 gmungocJAL-2843 unit tests for writing filters to Jalview...
2017-12-19 Jim ProcterJAL-2880 disabled non-functional test - Jmol parser...
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview...
2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest
2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere...
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement...
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term...
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings)
2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map
2017-11-07 gmungocJAL-2069 update spike branch with latest
2017-11-06 gmungocJAL-2820 include attribute value used for feature colou...
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching...
2017-10-20 gmungocPush 1793 latest to spike branch
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible
2017-10-09 gmungocJAL-2738 assertion for derived protein variant added
2017-10-09 gmungocJAL-2738 remove commented code, unit test coverage
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy
2017-09-26 kiramtJAL-2674 Unit test for new copy constructor.
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever...
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1...
2017-08-22 Jim ProcterJAL-2681 cross-ref selection for targeted debugging
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