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JAL-3291 issue fixed, passing tests added
[jalview.git]
/
test
/
jalview
/
io
/
2017-08-22
Jim Procter
JAL-2681 cross-ref selection for targeted debugging
tree
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commitdiff
2017-08-22
Jim Procter
JAL-2681 source formatting
tree
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commitdiff
2017-08-22
gmungoc
JAL-2680 remove all mappings in test teardown
tree
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commitdiff
2017-08-21
TZVanaalten
JAL-2668 fix failing tests caused by HMMER-related...
tree
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commitdiff
2017-08-18
TZVanaalten
Merge branch 'develop' into features/hmmer
tree
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commitdiff
2017-08-18
TZVanaalten
JAL-2668 add tests for HMMER commands, annotation and io
tree
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commitdiff
2017-08-17
TZVanaalten
JAL-2629 add documentation to previous work
tree
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commitdiff
2017-08-16
TZVanaalten
JAL-2629 add hmmbuild validation check which also gets...
tree
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commitdiff
2017-08-10
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-09
Jim Procter
JAL-1270 testProps should also enable debug logging
tree
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commitdiff
2017-08-04
TZVanaalten
JAL-2629 multiple HMMs can now be dropped onto an alignment
tree
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commitdiff
2017-08-02
TZVanaalten
JAL-2599 fix issue where parser exported map annotation...
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-31
gmungoc
JAL-2631 test updated for added kd graduated feature...
tree
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
tree
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commitdiff
2017-07-24
tzvanaalten
JAL-2599 add a couple of test files not included in...
tree
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commitdiff
2017-07-18
TZVanaalten
JAL-2599 modified state transition probability storage
tree
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commitdiff
2017-06-29
TZVanaalten
transferred the storage position of the HMM to annotations
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-23
TZVanaalten
test HMMER colour scheme
tree
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commitdiff
2017-06-22
TZVanaalten
fully integrate HMMER3 file format into Jalview
tree
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commitdiff
2017-06-20
TZVanaalten
create method to test HMM model as string
tree
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commitdiff
2017-06-20
TZVanaalten
restructure file exporter
tree
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commitdiff
2017-06-15
TZVanaalten
add tests for HMMFile class
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 Refactor HiddenColumns to use ArrayList instea...
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 More HiddenColumns refactoring. Tests passing.
tree
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commitdiff
2017-06-02
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-01
Jim Procter
Merge branch 'features/JAL-1648_cache_user_inputs'...
tree
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commitdiff
2017-05-31
tcofoegbu
Fixed failing tests
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
tree
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commitdiff
2017-05-25
gmungoc
JAL-2557 removal of Sequence.sequenceFeatures
tree
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commitdiff
2017-05-25
Jim Procter
Merge branch 'develop' into features/JAL-1648_cache_use...
tree
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commitdiff
2017-05-25
gmungoc
JAL-2505 removed SequenceFeature constructor JAL-1641...
tree
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commitdiff
2017-05-25
gmungoc
JAL-2490 test coverage of empty and null feature group...
tree
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commitdiff
2017-05-23
gmungoc
JAL-2490 find features for export as GFF, JAL-2548...
tree
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commitdiff
2017-05-23
gmungoc
JAL-2490 test coverage for printGffFormat before refact...
tree
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commitdiff
2017-05-23
gmungoc
JAL-2490 tidy code and tests for feature export in...
tree
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commitdiff
2017-05-22
gmungoc
JAL-2546 JAL-2490 efficient lookup of features, correct...
tree
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commitdiff
2017-05-22
gmungoc
JAL-2490 add non-positional feature case to test prior...
tree
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commitdiff
2017-05-16
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-16
gmungoc
JAL-2505 additional tests/asserts prior to refactoring
tree
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commitdiff
2017-05-15
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholm' into...
tree
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commitdiff
2017-05-15
Jim Procter
JAL-2507 - required callers to specify exact ignore...
tree
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commitdiff
2017-05-15
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-12
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
tree
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commitdiff
2017-05-11
Jim Procter
JAL-2507 JAL-2509 allow whitespace==null for annotation...
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS...
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2509 verify stockholm parser’s bracket regex is...
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2507 JAL-2509 extend test to cover round trip of...
tree
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commitdiff
2017-05-09
tcofoegbu
JAL-2520 unit test for improvement to download structur...
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2507 simplify round trip test via AppletFormatAdapter
tree
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commitdiff
2017-05-09
Jim Procter
JAL-2507 test for alignment+rna annotation -> Stockholm...
tree
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commitdiff
2017-05-08
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-05-04
tcofoegbu
JAL-1648 resolved CR-JAL-41 review issues
tree
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commitdiff
2017-05-04
Jim Procter
JAL-1656 make RNAML->Stockholm round trip test pass...
tree
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commitdiff
2017-05-04
Jim Procter
JAL-2507 JAL-2509 allow differences in visibility of...
tree
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commitdiff
2017-05-04
Jim Procter
JAL-2507 JAL-2509 new assert to compare secondary struc...
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 JAL-2403 push 'configure for view' inside...
tree
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commitdiff
2017-05-02
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-05-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-01
gmungoc
JAL-2489 JAL-2371 reinstate calls to
tree
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commitdiff
2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 patch jalview/io/testProps.jvprops to show...
features/JAL-1933_occupancy
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 patch jalview/io/testProps.jvprops to show...
tree
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commitdiff
2017-04-27
gmungoc
JAL-2492 use SequenceFeatures.getNonPositionalFeatures()
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/features/JAL-2388h...
tree
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commitdiff
2017-04-26
kiramt
JAL-2388 Update to hidden columns/column selection...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-25
tcofoegbu
JAL-2489 edited unit test code comment
tree
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commitdiff
2017-04-25
tcofoegbu
JAL-2489 Unit test for bug
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Working hidden regions hide/show in desktop
tree
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commitdiff
2017-04-24
tcofoegbu
JAL-1648 added unit test for AppCache
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-03-29
gmungoc
JAL-2416 revert to '*' not '-' in score matrix, handle...
tree
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commitdiff
2017-03-28
gmungoc
JAL-2403 JAL-2416 pairwise score unexpected symbols...
tree
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commitdiff
2017-03-28
gmungoc
JAL-2416 more test coverage of matrix parser
tree
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commitdiff
2017-03-27
gmungoc
JAL-2416 parse score matrices in either NCBI or AAindex...
tree
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commitdiff
2017-03-24
gmungoc
JAL-2428 simplify TreeModel constructors, add getOrigin...
tree
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commitdiff
2017-03-06
gmungoc
JAL-2428 separate TreeModel from TreeBuilder/NJTree...
tree
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commitdiff
2017-02-21
gmungoc
JAL-2416 support roundtrip print/parse of ScoreMatrix
tree
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commitdiff
2017-02-17
gmungoc
JAL-2416 allow space in score matrix name
tree
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commitdiff
2017-02-14
gmungoc
Parsing moved to (new) ScoreMatrixFile, drag and drop...
tree
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commitdiff
2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
tree
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commitdiff
2017-01-31
gmungoc
JAL-2385 more tests/bug fixes mostly for gui.SliderPane...
tree
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commitdiff
2017-01-27
gmungoc
JAL-2360 JAL-2371 updates from review CR-JAL-1
tree
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commitdiff
2017-01-26
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-26
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-26
gmungoc
JAL-2344 test fix and code tidy for review comments
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-12
gmungoc
JAL-2344 now flagging formats as 'identifiable' instead...
tree
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commitdiff
2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
tree
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commitdiff
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