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JAL-1625 JAL-1900 preserve the original DesktopManager instance provided by platform...
[jalview.git]
/
test
/
jalview
/
2017-02-09
Jim Procter
Merge branch 'develop' into features/JAL-2316
features/JAL-2316
tree
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commitdiff
2017-02-09
gmungoc
JAL-2371 no test for lower case consensus as not expect...
tree
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commitdiff
2017-02-09
gmungoc
Merge branch 'develop' into features/JAL-2379pcaMemory
features/JAL-2379pcaMemory
tree
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commitdiff
2017-02-09
gmungoc
JAL-2405 check for circular reference in SequenceGroup...
tree
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commitdiff
2017-02-09
gmungoc
JAL-2405 set initial selection group alignment context
tree
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commitdiff
2017-02-08
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-02-07
gmungoc
JAL-2397 PCA gap cost uses last column of score matrix
tree
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commitdiff
2017-02-06
gmungoc
JAL-2379 computePairwiseScores() moved to ScoreMatrix
tree
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commitdiff
2017-02-03
gmungoc
JAL-2379 'direct' pairwise score calculation for PCA...
tree
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commitdiff
2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
tree
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commitdiff
2017-01-31
gmungoc
JAL-2385 more tests/bug fixes mostly for gui.SliderPane...
tree
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commitdiff
2017-01-27
gmungoc
JAL-2371 CollectionColourScheme renamed ResidueShader...
tree
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commitdiff
2017-01-27
gmungoc
JAL-2099 belated unit test
tree
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commitdiff
2017-01-27
gmungoc
JAL-2360 JAL-2371 updates from review CR-JAL-1
tree
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commitdiff
2017-01-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-26
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-26
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-26
kiramt
JAL-2316 Updated to use identifiers jalview service
tree
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commitdiff
2017-01-26
gmungoc
Merge branch 'develop' into features/JAL-2379pcaMemory
tree
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commitdiff
2017-01-26
gmungoc
JAL-2344 test fix and code tidy for review comments
tree
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commitdiff
2017-01-26
gmungoc
JAL-2380 code tidy after review
tree
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commitdiff
2017-01-23
gmungoc
JAL-2379 made SparseMatrix.divide() so as to exactly...
tree
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commitdiff
2017-01-23
gmungoc
JAL-2386 unit tests for change colour (and minor refact...
tree
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commitdiff
2017-01-20
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-20
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-19
gmungoc
JAL-2370 unit tests for extracted ColumnSelection.stret...
tree
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commitdiff
2017-01-18
gmungoc
JAL-2379 more realistic matrices for unit tests
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2017-01-17
gmungoc
JAL-2370 fix bug when hiding a range including two...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-17
gmungoc
JAL-2379 SparseMatrix alternative to Matrix, both MatrixI
tree
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commitdiff
2017-01-17
gmungoc
JAL-2379 SparseDoubleArray added (for use by SparseMatrix)
tree
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commitdiff
2017-01-16
gmungoc
JAL-1270 class renamed
tree
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commitdiff
2017-01-16
gmungoc
JAL-2380 fix Matrix.postMultiply()
tree
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commitdiff
2017-01-16
gmungoc
JAL-1270 tweaks to AlignmentGenerator / client class
tree
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commitdiff
2017-01-12
gmungoc
JAL-1270 renamed AlignmentGenerator, and added peptide...
tree
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commitdiff
2017-01-12
gmungoc
JAL-2344 now flagging formats as 'identifiable' instead...
tree
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commitdiff
2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
tree
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commitdiff
2017-01-10
gmungoc
JAL-2377 avoid infinite loop formatting 1.0E-310
tree
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commitdiff
2017-01-10
kiramt
JAL-2316 Separate label/db name in UrlProviders. Unit...
tree
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commitdiff
2017-01-09
gmungoc
JAL-2371 remove ColourSchemeI.findColour(c), pure inter...
tree
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commitdiff
2017-01-09
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-06
gmungoc
JAL-2360 findColour() with no args removed from ColourS...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-05
gmungoc
JAL-2374 unit test for (modified) Alignment.findGroup()
tree
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commitdiff
2017-01-05
gmungoc
JAL-2371 add test for toggling ignore gaps with PID...
tree
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commitdiff
2017-01-05
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-05
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-05
gmungoc
JAL-2371 tests added
tree
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commitdiff
2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
tree
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commitdiff
2016-12-29
gmungoc
JAL-2630 first pass groovy colour scheme (with slight...
tree
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commitdiff
2016-12-23
gmungoc
JAL-2360 removed UserDefinedColours.userColourSchemes
tree
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commitdiff
2016-12-22
gmungoc
JAL-2360 structure viewers now using ColourMenuHelper...
tree
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commitdiff
2016-12-21
gmungoc
JAL-2360 simplified code to create a new colour scheme
tree
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commitdiff
2016-12-21
gmungoc
JAL-2360 ColourMenuHelper now builds and selects items...
tree
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commitdiff
2016-12-21
gmungoc
JAL-2360 Javadoc and test cases for findAnnotation
tree
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commitdiff
2016-12-20
gmungoc
JAL-2360 testRegisterColourScheme to demonstrate a...
tree
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commitdiff
2016-12-20
gmungoc
JAL-2360 ColourSchemes holds configured schemes, AlignF...
tree
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commitdiff
2016-12-19
gmungoc
JAL-2360 amended toAppletParameter() for reproducible...
tree
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commitdiff
2016-12-16
kiramt
JAL-2316 Added database name column to URL links table...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2356 enhanced unit test to verify reuse (or not...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 added UserColourScheme.toAppletParameter+test...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 getColour() renamed to getColourScheme(),...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
tree
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commitdiff
2016-12-16
gmungoc
JAL-1354 use i18n text for expected value
tree
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commitdiff
2016-12-15
kiramt
JAL-2316 Changes following review.
tree
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commitdiff
2016-12-14
gmungoc
JAL-2360 test added
tree
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commitdiff
2016-12-13
kiramt
Merge branch 'develop' into features/JAL-2316
tree
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commitdiff
2016-12-12
gmungoc
JAL-2361 extract methods to (re-)build colour menu
tree
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commitdiff
2016-12-12
kiramt
JAL-2316 Unit test update to UrlLinkTableModel and...
tree
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commitdiff
2016-12-12
kiramt
JAL-2316 Added jalview.urls.* packages
tree
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commitdiff
2016-12-12
kiramt
JAL-2316 More unit testing and adjustments
tree
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commitdiff
2016-12-12
gmungoc
JAL-2362 return correct lower-case colour; Javadoc...
tree
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commitdiff
2016-12-12
kiramt
JAL-2316 Unit tests
tree
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commitdiff
2016-12-09
kiramt
JAL-2316 Unit test updates and associated minor changes...
tree
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commitdiff
2016-12-09
kiramt
JAL-2316 Unit testing, relax constraint that default...
tree
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commitdiff
2016-12-07
kiramt
JAL-2316 Unit test for download client
tree
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commitdiff
2016-12-07
kiramt
JAL-2316 Restructure identifiers.org download
tree
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commitdiff
2016-12-05
kiramt
JAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
tree
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commitdiff
2016-12-02
gmungoc
Unit tests added, minor refactoring
tree
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commitdiff
2016-12-02
gmungoc
JAL-2346 unit test for annotation drop-down list builder
tree
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commitdiff
2016-12-01
tcofoegbu
JAL-1648 Implemented in-memory caching for FTS (Uniprot...
tree
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commitdiff
2016-11-30
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-29
gmungoc
JAL-2329 tests to confirm behaviour of Java extended...
tree
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commitdiff
2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-28
tcofoegbu
Merge branch 'features/JAL-2326_JOptionPane-refactoring...
tree
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commitdiff
2016-11-28
gmungoc
JAL-2345 cache generated ImageIcon per file path
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-25
gmungoc
JAL-2344 correct roundtrip test to exclude Jalview...
tree
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commitdiff
2016-11-24
tcofoegbu
JAL-2326 added setup method for JvOptionPane in all...
features/JAL-2326_JOptionPane-refactoring
tree
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commitdiff
2016-11-24
gmungoc
Further tweaks to get tests passing
tree
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commitdiff
2016-11-24
tcofoegbu
JAL-2326 added layer of abstraction between Jalview...
tree
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commitdiff
2016-11-24
Jim Procter
JAL-2325 apply license to new source files
tree
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commitdiff
2016-11-23
Jim Procter
Merge branch 'bug/JAL-2323disulfideOverview' into develop
tree
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commitdiff
2016-11-23
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
tree
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commitdiff
next