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JAL-2629 fix expected length error for hmmbuild by uniquifying sequences
[jalview.git] / test / jalview /
2017-08-09 TZVanaaltenJAL-2629 disable AAFrequencyTest compilation error tree | commitdiff
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment tree | commitdiff
2017-08-02 TZVanaaltenJAL-2599 fix issue where parser exported map annotation... tree | commitdiff
2017-07-27 TZVanaaltenJAL-2629 moved HMM storage location to placeholder... tree | commitdiff
2017-07-25 TZVanaaltenJAL-2616 add ability to perform random alignments withi... tree | commitdiff
2017-07-24 tzvanaaltenJAL-2599 add a couple of test files not included in... tree | commitdiff
2017-07-24 tzvanaaltenJAL-2616 add test class and test files for analyser tree | commitdiff
2017-07-21 TZVanaaltenJAL-2616 add ability to sort Pfam families and HMMs... tree | commitdiff
2017-07-20 TZVanaaltenJAL-2616 add documentation for probability analyser tree | commitdiff
2017-07-18 TZVanaaltenJAL-2599 modified state transition probability storage tree | commitdiff
2017-07-12 TZVanaaltentest HMM annotaTION tree | commitdiff
2017-06-29 TZVanaaltentransferred the storage position of the HMM to annotations tree | commitdiff
2017-06-23 TZVanaaltentest HMMER colour scheme tree | commitdiff
2017-06-22 TZVanaaltenfully integrate HMMER3 file format into Jalview tree | commitdiff
2017-06-20 TZVanaaltencreate method to test HMM model as string tree | commitdiff
2017-06-20 TZVanaaltenrestructure file exporter tree | commitdiff
2017-06-15 TZVanaaltenadd tests for HMMFile class tree | commitdiff
2017-06-15 TZVanaaltenUpdate HiddenMarkovModel class tree | commitdiff
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop tree | commitdiff
2017-05-31 tcofoegbuJAL-2375 fix unit test to reflect improvement tree | commitdiff
2017-05-31 tcofoegbuFixed failing tests tree | commitdiff
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement tree | commitdiff
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571 tree | commitdiff
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to... tree | commitdiff
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping... tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL... tree | commitdiff
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop tree | commitdiff
2017-05-27 Jim ProcterJAL-2563 failing test to verify SetStatus returns posit... task/JAL-2562_SequenceI.findPosition tree | commitdiff
2017-05-27 Jim ProcterJAL-2563 test to verify SetStatus returns -1 so mouseOv... tree | commitdiff
2017-05-27 Jim ProcterJAL-2547 JAL-2562 rejig SetStatusMessage return value... tree | commitdiff
2017-05-27 Jim ProcterJAL-2526 test and documentation for SeqPanel.setStatus... tree | commitdiff
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 RNAAliFold result to annotation file roundtrip... features/JAL-2549_updateJABAWSto220 tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 skip ‘Unrecognised Service’ which resolves... tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove... tree | commitdiff
2017-05-22 gmungocJAL-2544 unit tests for sort by feature score tree | commitdiff
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256 tree | commitdiff
2017-05-16 kiramtMerge branch 'develop' into bug/JAL-2491 tree | commitdiff
2017-05-16 kiramtJAL-2491 Better merge tree | commitdiff
2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-15 Jim ProcterJAL-2311 disable and relocate Jared service tests to... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore... tree | commitdiff
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-05-15 kiramtJAL-2491 Tests tree | commitdiff
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of... tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-05-12 kiramtJAL-2491 Unit test updates tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation... tree | commitdiff
2017-05-11 kiramtJAL-2491 Unit tests and updates tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... tree | commitdiff
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of... tree | commitdiff
2017-05-09 tcofoegbuJAL-2520 unit test for improvement to download structur... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm... tree | commitdiff
2017-05-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512 tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... tree | commitdiff
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... tree | commitdiff
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... tree | commitdiff
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... tree | commitdiff
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test tree | commitdiff
2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions tree | commitdiff
2017-05-03 gmungocJAL-2246 test a Uniprot fetch tree | commitdiff
2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary tree | commitdiff
2017-05-02 Jim ProcterJAL-2424 fixme’s removed tree | commitdiff
2017-05-02 Jim ProcterJAL-2424 update assert to correct width for normalising... tree | commitdiff
2017-05-02 Jim ProcterJAL-2424 resolved, assert updated to pass (1f != 1d) tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop tree | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-01 tcofoegbuJAL-2482 unit test for bug fix tree | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... tree | commitdiff
2017-05-01 tcofoegbuJAL-2465 unit test for bugfix tree | commitdiff
2017-05-01 gmungocMerge remote-tracking branch tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 don't show occupancy row when testing conserva... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 test for SHOW_OCCUPANCY .jalview_properties... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 test to cover AnnotatedCollectionI.findAnnotat... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h... tree | commitdiff
2017-04-26 kiramtJAL-2388 Update to hidden columns/column selection... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h... tree | commitdiff
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