JAL-2629 fix expected length error for hmmbuild by uniquifying sequences
[jalview.git] / test / jalview /
2017-08-09 TZVanaaltenJAL-2629 disable AAFrequencyTest compilation error
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment
2017-08-02 TZVanaaltenJAL-2599 fix issue where parser exported map annotation...
2017-07-27 TZVanaaltenJAL-2629 moved HMM storage location to placeholder...
2017-07-25 TZVanaaltenJAL-2616 add ability to perform random alignments withi...
2017-07-24 tzvanaaltenJAL-2599 add a couple of test files not included in...
2017-07-24 tzvanaaltenJAL-2616 add test class and test files for analyser
2017-07-21 TZVanaaltenJAL-2616 add ability to sort Pfam families and HMMs...
2017-07-20 TZVanaaltenJAL-2616 add documentation for probability analyser
2017-07-18 TZVanaaltenJAL-2599 modified state transition probability storage
2017-07-12 TZVanaaltentest HMM annotaTION
2017-06-29 TZVanaaltentransferred the storage position of the HMM to annotations
2017-06-23 TZVanaaltentest HMMER colour scheme
2017-06-22 TZVanaaltenfully integrate HMMER3 file format into Jalview
2017-06-20 TZVanaaltencreate method to test HMM model as string
2017-06-20 TZVanaaltenrestructure file exporter
2017-06-15 TZVanaaltenadd tests for HMMFile class
2017-06-15 TZVanaaltenUpdate HiddenMarkovModel class
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop
2017-05-31 tcofoegbuJAL-2375 fix unit test to reflect improvement
2017-05-31 tcofoegbuFixed failing tests
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to...
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping...
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL...
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop
2017-05-27 Jim ProcterJAL-2563 failing test to verify SetStatus returns posit... task/JAL-2562_SequenceI.findPosition
2017-05-27 Jim ProcterJAL-2563 test to verify SetStatus returns -1 so mouseOv...
2017-05-27 Jim ProcterJAL-2547 JAL-2562 rejig SetStatusMessage return value...
2017-05-27 Jim ProcterJAL-2526 test and documentation for SeqPanel.setStatus...
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup
2017-05-23 Jim ProcterJAL-2549 RNAAliFold result to annotation file roundtrip... features/JAL-2549_updateJABAWSto220
2017-05-23 Jim ProcterJAL-2549 skip ‘Unrecognised Service’ which resolves...
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove...
2017-05-22 gmungocJAL-2544 unit tests for sort by feature score
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256
2017-05-16 kiramtMerge branch 'develop' into bug/JAL-2491
2017-05-16 kiramtJAL-2491 Better merge
2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
2017-05-15 Jim ProcterJAL-2311 disable and relocate Jared service tests to...
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore...
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-05-15 kiramtJAL-2491 Tests
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of...
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-05-12 kiramtJAL-2491 Unit test updates
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation...
2017-05-11 kiramtJAL-2491 Unit tests and updates
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS...
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is...
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of...
2017-05-09 tcofoegbuJAL-2520 unit test for improvement to download structur...
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm...
2017-05-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass...
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of...
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test
2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions
2017-05-03 gmungocJAL-2246 test a Uniprot fetch
2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary
2017-05-02 Jim ProcterJAL-2424 fixme’s removed
2017-05-02 Jim ProcterJAL-2424 update assert to correct width for normalising...
2017-05-02 Jim ProcterJAL-2424 resolved, assert updated to pass (1f != 1d)
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-01 tcofoegbuJAL-2482 unit test for bug fix
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-05-01 tcofoegbuJAL-2465 unit test for bugfix
2017-05-01 gmungocMerge remote-tracking branch
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show...
2017-04-27 Jim ProcterJAL-1933 don't show occupancy row when testing conserva...
2017-04-27 Jim ProcterJAL-1933 test for SHOW_OCCUPANCY .jalview_properties...
2017-04-27 Jim ProcterJAL-2494 test to cover AnnotatedCollectionI.findAnnotat...
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h...
2017-04-26 kiramtJAL-2388 Update to hidden columns/column selection...
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h...
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