JAL-2332 bugfix to enable structure chooser opening for hen lysozyme
[jalview.git] / test / jalview /
2016-05-26 gmungocJAL-2113 additions to embl_mapping.xml / data models... features/JAL-2113_emblXml1.2
2016-05-25 gmungocJAL-2110 wip CrossRefs rewrite of CrossRef
2016-05-23 gmungocJAL-2113 remove spaces in sequence from unmarshalling...
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-05-23 gmungocJAL-2114 save 'raw' ENA location as a sequence feature...
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove...
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2113_emblXml1.2
2016-05-20 gmungocJAL-2114 explicit invalid test cases added
2016-05-20 gmungocJAL-2113 corrected test to use valid location syntax
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL...
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef
2016-05-20 gmungocJAL-2049 unit test updated for HGVS syntax, feature...
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue
2016-05-17 tcofoegbumerge
2016-05-17 tcofoegbuJAL-1270 Fixed anntatedPDBFileInputTest and updated...
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi...
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles
2016-05-09 tcofoegbumerge
2016-05-09 tcofoegbuJAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin...
2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature...
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly
2016-05-05 Jim ProcterJAL-192 patch for off-by one and pathological case...
2016-05-03 gmungocJAL-2050 hide introns also when fetching Ensembl xrefs...
2016-05-03 gmungocJAL-2068 minimised jalview.gui imports, test for remove...
2016-05-02 Jim ProcterJAL-1270 move some Network tests to External (require...
2016-05-02 Jim ProcterJAL-1270 capitalise test groups
2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop...
2016-04-29 tcofoegbumerge
2016-04-29 Jim ProcterJAL-192 need visible and actual sequence limits for...
2016-04-29 Jim ProcterJAL-192 fix bounds when no hidden regions, and when...
2016-04-29 Jim ProcterJAL-192 ‘efficiently’ locate visible bounds for a seque...
2016-04-28 tcofoegbuJAL-1563 fixed failing tests for FTS Rest Client core
2016-04-27 tcofoegbuJAL-1563 Added Id (Uniprot Id) to the dynamic column...
2016-04-26 Jim ProcterJAL-2079 update GPL header for new Xfam tests
2016-04-26 Jim ProcterJAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network...
2016-04-26 tcofoegbuJAL-2071 improvement to get column data files as InputS...
2016-04-26 tcofoegbuJAL-2071 House keeping
2016-04-25 tcofoegbudevelop merge
2016-04-25 tcofoegbudevelop merge
2016-04-25 tcofoegbuJAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search
2016-04-24 Jim ProcterMerge branch 'JAL-2075_features_hiddeng' into develop
2016-04-24 Jim ProcterJAL-2075 test showing hidden columns bug in feature...
2016-04-24 Jim ProcterJAL-2075 refactor FeatureScoreModel to native testNG...
2016-04-23 Jim ProcterJAL-2075 findPosition for SeqCigar (with test)
2016-04-22 tcofoegbuJAL-2071 further refactoring, optimisation, and house...
2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue
2016-04-22 gmungocJAL-2068 convenience helper method for graduated score...
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free...
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib...
2016-04-14 gmungocJAL-2041 clinical_significance shown on sequence featur...
2016-04-14 gmungocJAL-2049 revised computePeptideVariants to transfer...
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g....
2016-04-14 gmungocJAL-653 test updated for 'use ID for description'
2016-04-13 Jim ProcterJAL-2046 test to demonstrate feature duplication bug
2016-04-13 Jim ProcterMerge branch 'bug/JAL-2046_ds_sharing_features_broken...
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test
2016-04-13 tcofoegbumerge
2016-04-13 tcofoegbuJAL-1270 Fixed failing tests due to race conditions...
2016-04-12 gmungocJAL-2049 separate protein variant per dna variant ...
2016-04-11 tcofoegbuJAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...
2016-04-08 Jim ProcterMerge branch 'feature/JAL-2050_intronhidden' into develop
2016-04-08 Jim ProcterJAL-2050 JAL-1722 new getSelectedRange() method to...
2016-04-06 tcofoegbumerge
2016-04-06 tcofoegbuJAL-1960 updated test to capture new behaviour improvement
2016-04-05 Jim ProcterJAL-2046 RFC about cyclic dataset sequence references...
2016-04-05 Jim ProcterJAL-2046 revise test for ambiguous case
2016-04-05 Jim ProcterJAL-2046 ambiguous test for addSequenceFeature when...
2016-04-05 Jim ProcterJAL-2046 RFC on addSequenceFeature behaviour after...
2016-04-05 Jim ProcterJAL-2046 test behaviour of copy constructor in differen...
2016-04-04 Jim ProcterJAL-2046 basic test to make sure any derived sequence...
2016-04-04 Jim ProcterJAL-2001 faster getMax/getMin selected column, with...
2016-04-01 gmungocJAL-1705 ensure the right mapping is used to align...
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-04-01 gmungocJAL-2046 fix for broken test for deriveSequence
2016-04-01 gmungocJAL-1705 reworked AlignmentUtils.makeCdsAlignment and...
2016-04-01 gmungocJAL-653 updated test to match parsing of multi-valued...
2016-04-01 gmungocJAL-1705 tweak to MapList.toString for debugging
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1...
2016-04-01 gmungocJAL-1705 test updated for canonicalised UNIPROT sequenc...
2016-04-01 gmungocJAL-2037 set DBRefEntry.version to "0" not "" in EMBL...
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms)
2016-03-28 tcofoegbuJAL-1919 Fixed broken test in DBRefUtilsTest
2016-03-23 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-03-23 gmungocJAL-1705 add DBRefEntry for 'self' to retrieved transcr...
2016-03-22 tcofoegburesolve conflict with Mungo's merge
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher...
2016-03-22 gmungocJAL-1191 isolated SequenceOntology (BioJava wrapper...
2016-03-22 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-03-21 tcofoegbuJAL-1919 refactor moved StructureViewerSettings
2016-03-21 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
2016-03-21 tcofoegbudevelop merge
2016-03-15 gmungocJAL-2016 corrected Javadoc, added test for anonymous...
2016-03-15 gmungocJAL-1705 code tidy/comment only
2016-03-15 gmungocJAL-1705 compute reverse complement of variants on...
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings...
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
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