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JAL-1270 added runAlways=true to setUp method
[jalview.git]
/
test
/
jalview
/
2016-06-21
gmungoc
JAL-1270 added runAlways=true to setUp method
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 make sure desktop is cleared before test starts
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 jalview2xml tests need to be run sequentially
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 fix the test
tree
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commitdiff
2016-06-20
Jim Procter
JAL-1369 failing test
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
tree
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commitdiff
2016-06-16
Jim Procter
tests for validating start-end number/sequence length...
tree
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commitdiff
2016-06-16
gmungoc
JAL-2112 optimisation of EMBL CDS parsing
tree
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commitdiff
2016-06-15
gmungoc
JAL-2025 unit tests added
tree
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commitdiff
2016-06-15
gmungoc
JAL-2101 unit test updated to match config file
tree
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commitdiff
2016-06-14
gmungoc
JAL-2114 more helpful reporting of parse failures
tree
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commitdiff
2016-06-14
tcofoegbu
JAL-2047 resolved structure chooser's displayed column...
tree
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commitdiff
2016-06-10
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-10
tcofoegbu
JAL-1479 updated SIFTS FTP download URL, added improvem...
tree
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commitdiff
2016-06-10
Jim Procter
JAL-1941 remove improper test tag from Annotate3D test...
tree
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commitdiff
2016-06-10
Jim Procter
JAL-1941 Annotate3d tests should be in network group
tree
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commitdiff
2016-06-01
Jim Procter
JAL-2038 fix tests for case insensitive eSequenceIdMatcher
tree
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commitdiff
2016-05-31
gmungoc
JAL-2110 refactor + tests to allow a dbref version...
tree
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commitdiff
2016-05-31
Jim Procter
Merge branch 'develop' into features/JAL-2113_emblXml1.2
tree
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commitdiff
2016-05-30
gmungoc
JAL-1670 JAL-2018 updated unit test for added example...
tree
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commitdiff
2016-05-30
gmungoc
JAL-1989 equals method strengthened to fully match...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1989 added hashCode and equals, renamed field to...
tree
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commitdiff
2016-05-26
gmungoc
JAL-2079 update examples to new pfam.xfam.org domain
tree
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commitdiff
2016-05-26
gmungoc
JAL-2113 additions to embl_mapping.xml / data models...
features/JAL-2113_emblXml1.2
tree
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commitdiff
2016-05-23
gmungoc
JAL-2113 remove spaces in sequence from unmarshalling...
tree
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commitdiff
2016-05-23
gmungoc
JAL-2114 save 'raw' ENA location as a sequence feature...
tree
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commitdiff
2016-05-23
gmungoc
JAL-2113 EBIFetchClient refactor / unit tests / remove...
tree
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commitdiff
2016-05-23
gmungoc
Merge branch 'develop' into features/JAL-2113_emblXml1.2
tree
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commitdiff
2016-05-20
gmungoc
JAL-2114 explicit invalid test cases added
tree
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commitdiff
2016-05-20
gmungoc
JAL-2113 corrected test to use valid location syntax
tree
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commitdiff
2016-05-20
gmungoc
JAL-2113 embl_mapping.xml and code updated for EMBL...
tree
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commitdiff
2016-05-20
gmungoc
JAL-2114 accept "<123..178" or "123..>178" format
tree
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commitdiff
2016-05-20
gmungoc
JAL-2049 unit test updated for HGVS syntax, feature...
tree
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commitdiff
2016-05-19
gmungoc
JAL-2114 added single-locus case and more error tests
tree
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commitdiff
2016-05-19
gmungoc
JAL-2114 parser + tests for GenBank location descriptors
tree
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commitdiff
2016-05-18
gmungoc
JAL-2049 use HGVS notation for variant on protein residue
tree
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commitdiff
2016-05-17
tcofoegbu
merge
tree
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commitdiff
2016-05-17
tcofoegbu
JAL-1270 Fixed anntatedPDBFileInputTest and updated...
tree
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commitdiff
2016-05-13
gmungoc
JAL-2105 capture Ensembl data version, check REST versi...
tree
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commitdiff
2016-05-09
tcofoegbu
merge
tree
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commitdiff
2016-05-09
tcofoegbu
JAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin...
tree
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commitdiff
2016-05-09
gmungoc
JAL-2098 identify feature file with "<" in feature...
tree
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commitdiff
2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
tree
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commitdiff
2016-05-05
Jim Procter
JAL-192 patch for off-by one and pathological case...
tree
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commitdiff
2016-05-03
gmungoc
JAL-2050 hide introns also when fetching Ensembl xrefs...
tree
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commitdiff
2016-05-02
Jim Procter
JAL-1270 move some Network tests to External (require...
tree
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commitdiff
2016-05-02
Jim Procter
JAL-1270 capitalise test groups
tree
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commitdiff
2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
tree
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commitdiff
2016-04-29
tcofoegbu
merge
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 need visible and actual sequence limits for...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 fix bounds when no hidden regions, and when...
tree
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commitdiff
2016-04-29
Jim Procter
JAL-192 ‘efficiently’ locate visible bounds for a seque...
tree
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commitdiff
2016-04-28
tcofoegbu
JAL-1563 fixed failing tests for FTS Rest Client core
tree
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commitdiff
2016-04-27
tcofoegbu
JAL-1563 Added Id (Uniprot Id) to the dynamic column...
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2079 update GPL header for new Xfam tests
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network...
tree
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commitdiff
2016-04-26
tcofoegbu
JAL-2071 improvement to get column data files as InputS...
tree
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commitdiff
2016-04-26
tcofoegbu
JAL-2071 House keeping
tree
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commitdiff
2016-04-25
tcofoegbu
develop merge
tree
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commitdiff
2016-04-25
tcofoegbu
develop merge
tree
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commitdiff
2016-04-25
tcofoegbu
JAL-2071 added unit tests for FTSRestClient
features/JAL-1563_uniprot-free-text-search
tree
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commitdiff
2016-04-24
Jim Procter
Merge branch 'JAL-2075_features_hiddeng' into develop
tree
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commitdiff
2016-04-24
Jim Procter
JAL-2075 test showing hidden columns bug in feature...
tree
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commitdiff
2016-04-24
Jim Procter
JAL-2075 refactor FeatureScoreModel to native testNG...
tree
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commitdiff
2016-04-23
Jim Procter
JAL-2075 findPosition for SeqCigar (with test)
tree
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commitdiff
2016-04-22
tcofoegbu
JAL-2071 further refactoring, optimisation, and house...
tree
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commitdiff
2016-04-22
gmungoc
JAL-2068 code and test for case of minValue == maxValue
tree
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commitdiff
2016-04-22
gmungoc
JAL-2068 convenience helper method for graduated score...
tree
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commitdiff
2016-04-19
tcofoegbu
JAL-2071 architectural improvement for Plugable Free...
tree
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commitdiff
2016-04-14
gmungoc
JAL-2041 add ID,clinical_significance to feature attrib...
tree
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commitdiff
2016-04-14
gmungoc
JAL-2041 clinical_significance shown on sequence featur...
tree
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commitdiff
2016-04-14
gmungoc
JAL-2049 revised computePeptideVariants to transfer...
tree
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commitdiff
2016-04-14
gmungoc
JAL-1705 refactored/utility methods to detect e.g....
tree
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commitdiff
2016-04-14
gmungoc
JAL-653 test updated for 'use ID for description'
tree
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commitdiff
2016-04-13
Jim Procter
JAL-2046 test to demonstrate feature duplication bug
tree
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commitdiff
2016-04-13
Jim Procter
Merge branch 'bug/JAL-2046_ds_sharing_features_broken...
tree
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commitdiff
2016-04-13
tcofoegbu
JAL-1270 more fix for failing Functional test
tree
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commitdiff
2016-04-13
tcofoegbu
merge
tree
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commitdiff
2016-04-13
tcofoegbu
JAL-1270 Fixed failing tests due to race conditions...
tree
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commitdiff
2016-04-12
gmungoc
JAL-2049 separate protein variant per dna variant ...
tree
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commitdiff
2016-04-11
tcofoegbu
JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...
tree
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commitdiff
2016-04-08
Jim Procter
Merge branch 'feature/JAL-2050_intronhidden' into develop
tree
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commitdiff
2016-04-08
Jim Procter
JAL-2050 JAL-1722 new getSelectedRange() method to...
tree
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commitdiff
2016-04-06
tcofoegbu
merge
tree
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commitdiff
2016-04-06
tcofoegbu
JAL-1960 updated test to capture new behaviour improvement
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 RFC about cyclic dataset sequence references...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 revise test for ambiguous case
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 ambiguous test for addSequenceFeature when...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 RFC on addSequenceFeature behaviour after...
tree
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commitdiff
2016-04-05
Jim Procter
JAL-2046 test behaviour of copy constructor in differen...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2046 basic test to make sure any derived sequence...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 faster getMax/getMin selected column, with...
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 ensure the right mapping is used to align...
tree
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commitdiff
2016-04-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-04-01
gmungoc
JAL-2046 fix for broken test for deriveSequence
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 reworked AlignmentUtils.makeCdsAlignment and...
tree
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commitdiff
2016-04-01
gmungoc
JAL-653 updated test to match parsing of multi-valued...
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 tweak to MapList.toString for debugging
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 generalised getLength() to handle [start1...
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 test updated for canonicalised UNIPROT sequenc...
tree
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commitdiff
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