JAL-2691 cached view combo box value javadoc
[jalview.git] / test / jalview /
2017-03-15 gmungocJAL-2438 handle null FeatureRenderer in FeatureColourFinder
2017-03-15 gmungocJAL-2438 refactored checks for 'no features displayed'
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support...
2017-03-14 gmungocJAL-2438 unit test, fixes, Javadoc updates
2017-03-14 gmungocJAL-2438 unit tests for FeatureColourFinder (transparen...
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-10 kiramtJAL-2437 Fixed reordering of sequences when hiding...
2017-03-10 kiramtJAL-2388 Moving some alignment panel logic into overvie...
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit...
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on...
2017-03-07 kiramtJAL-2388 Fixed inherited&new out-by-one errors; further...
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set...
2017-03-07 kiramtJAL-2388 Additional unit tests
2017-03-07 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-03-07 kiramtJAL-2429 findColumnPosition returns 0 for cols in regio...
2017-03-07 kiramtJAL-2429 Additional fix to ColumnSelection when hidden...
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui...
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated...
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
2017-03-03 kiramtJAL-2429 Fix to ColumnSelection::findColumnPosition
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of...
2017-03-01 gmungocJAL-1264 smarter way to skip autocalc'd annotations...
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-02-28 gmungocJAL-1632 'includeGaps' applied to FeatureDistanceModel...
2017-02-28 kiramtJAL-2388 Removing sources of non-determinism in unit...
2017-02-27 gmungocJAL-2416 seqspace.scm and PIDDistanceModel replaced...
2017-02-27 gmungocJAL-838 ScoreMatrix now respects SimilarityParams!
2017-02-27 gmungocJAL-838 tests for PID calculation with parameter options
2017-02-27 kiramtJAL-2388 Minor refactoring
2017-02-27 kiramtJAL-2388 Unit tests take 2
2017-02-24 gmungocJAL-838 added 'SeqSpace' PID mode, added parameters...
2017-02-24 gmungocJAL-2403 PIDModel added (wip)
2017-02-24 gmungocJAL-1483 PIDModel potential replacement for PIDDistance...
2017-02-24 gmungocJAL-2403 JAL-1483 push 'reverseRange' inside Matrix
2017-02-23 kiramtJAL-2388 Unit tests for columns, take 1
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
2017-02-23 gmungocJAL-2403 additional methods to support distance/similar...
2017-02-23 kiramtJAL-2388 Unit tests in progress
2017-02-21 gmungocJAL-2416 typo
2017-02-21 gmungocJAL-2416 ScoreMatrix.getMatrix() returns a defensive...
2017-02-21 gmungocJAL-2416 support roundtrip print/parse of ScoreMatrix
2017-02-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-02-21 kiramtMerge branch 'bug/JAL-2421overviewboxflicker' into
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow
2017-02-21 kiramtJAL-2421 Unit test
2017-02-21 gmungocJAL-2416 more validation in ScoreMatrix constructor
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
2017-02-20 gmungocJAL-2416 replaced dependency on ResidueProperties with...
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop
2017-02-17 gmungocJAL-2416 scoreMatrices removed from ResidueProperties
2017-02-17 gmungocJAL-2413 extracted new method SetUtils.countDisjunction()
2017-02-17 kiramtJAL-2388 Incomplete unit tests
2017-02-17 gmungocJAL-2416 score models now held in order added
2017-02-17 gmungocJAL-2416 allow space in score matrix name
2017-02-17 gmungocJAL-2403 extract method refactoring of FeatureScoreMode...
2017-02-17 kiramtJAL-2421 incomplete unit test
2017-02-17 kiramtJAL-2421 Fix to alignment panel scroll values, and...
2017-02-15 Jim ProcterJAL-2374 tests for SequenceGroup.contains
2017-02-15 Jim ProcterJAL-2374 JAL-1270 assign SequenceGroup tests to ‘Functi...
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop...
2017-02-14 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice
2017-02-13 gmungocJAL-2416 allow alphabet symbol (optional) in first...
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as...
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode...
2017-02-09 Jim ProcterMerge branch 'develop' into features/JAL-2316 features/JAL-2316
2017-02-09 gmungocJAL-2371 no test for lower case consensus as not expect...
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory
2017-02-09 gmungocJAL-2405 check for circular reference in SequenceGroup...
2017-02-09 gmungocJAL-2405 set initial selection group alignment context
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-07 gmungocJAL-2397 PCA gap cost uses last column of score matrix
2017-02-06 gmungocJAL-2379 computePairwiseScores() moved to ScoreMatrix
2017-02-03 gmungocJAL-2379 'direct' pairwise score calculation for PCA...
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-27 gmungocJAL-2099 belated unit test
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-26 kiramtJAL-2316 Updated to use identifiers jalview service
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments
2017-01-26 gmungocJAL-2380 code tidy after review
2017-01-23 gmungocJAL-2379 made SparseMatrix.divide() so as to exactly...
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-19 gmungocJAL-2370 unit tests for extracted ColumnSelection.stret...
2017-01-18 gmungocJAL-2379 more realistic matrices for unit tests
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two...
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-17 gmungocJAL-2379 SparseMatrix alternative to Matrix, both MatrixI
2017-01-17 gmungocJAL-2379 SparseDoubleArray added (for use by SparseMatrix)
2017-01-16 gmungocJAL-1270 class renamed
2017-01-16 gmungocJAL-2380 fix Matrix.postMultiply()
2017-01-16 gmungocJAL-1270 tweaks to AlignmentGenerator / client class
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