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JAL-4134 highlight selected column nodes on the linked alignment view using getMapped...
[jalview.git]
/
test
/
jalview
/
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
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commitdiff
2020-05-15
gmungoc
JAL-2422 JAL-3551 unit tests updated for code changes
tree
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commitdiff
2020-05-15
gmungoc
JAL-3551 pull up Close Viewer dialog to base class
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 JAL-3551 viewer text/variables generalised...
tree
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commitdiff
2020-05-01
gmungoc
JAL-3613 check sequence overlap when matching search...
tree
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commitdiff
2020-04-25
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'bug/JAL-3574filterByPOS' into documentati...
tree
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commitdiff
2020-04-21
gmungoc
JAL-3210 try adding setup method to unit test failing...
tree
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commitdiff
2020-04-21
gmungoc
JAL-1889 corrected wait for consensus to be calculated
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'bug/JAL-3567virtualFeatureCoordinates...
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3567 translated rather than imputed peptide
tree
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commitdiff
2020-04-17
gmungoc
JAL-3567 unit tests for linked feature tooltips
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 adjust layout of linked feature report, unit...
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 report mapped location for virtual features...
tree
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commitdiff
2020-04-14
Jim Procter
Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
tree
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commitdiff
2020-04-14
Jim Procter
JAL-3529 revert ordering of DBRef addition so it reflec...
tree
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commitdiff
2020-04-14
Jim Procter
JAL-3597 improved Memory test suite by detecting base...
tree
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commitdiff
2020-04-13
gmungoc
JAL-3574 test coverage corners
bug/JAL-3574filterByPOS
tree
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commitdiff
2020-04-13
gmungoc
JAL-3574 Matcher with integer/long value pattern (e...
tree
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commitdiff
2020-03-31
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-31
gmungoc
JAL-1889 better (?) wait for Conservation thread
tree
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commitdiff
2020-03-30
gmungoc
JAL-3210 test updated for changed signature of Sequence...
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-20
Jim Procter
JAL-3562 exclude testNG groups from a build via -Ptestn...
tree
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commitdiff
2020-03-20
Jim Procter
JAL-3561 failing test verifying expected fileformat...
tree
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commitdiff
2020-03-16
gmungoc
JAL-3551 the correct PyMOL colour by chain command
tree
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commitdiff
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
tree
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commitdiff
2020-03-09
gmungoc
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
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commitdiff
2020-03-09
gmungoc
JAL-3528 unit tests added for failed lookup, Javadoc
tree
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commitdiff
2020-03-06
gmungoc
JAL-3187 unit test for findComplementFeaturesAtResidue
tree
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commitdiff
2020-03-06
gmungoc
Merge branch 'feature/JAL-3468featureDescriptionEllipsi...
tree
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commitdiff
2020-03-06
gmungoc
JAL-3468 i18n and additional unit tests
feature/JAL-3468featureDescriptionEllipsis
tree
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commitdiff
2020-03-06
Ben Soares
JAL-3529 improved regex in Stockholm UNIPROT accession...
tree
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commitdiff
2020-03-04
Ben Soares
JAL-3468 Fixed tests and added test for max-length...
tree
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commitdiff
2020-03-03
gmungoc
JAL-3518 more pull up / test coverage of structure...
tree
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commitdiff
2020-02-28
gmungoc
JAL-3518 basic refactoring / pull up of superposeStruct...
tree
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commitdiff
2020-02-27
Jim Procter
JAL-3412 patch for failing test
tree
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commitdiff
2020-02-27
Jim Procter
Merge branch 'bug/JAL-3412idWidthDiscrepancy' into...
bug/JAL-3412idWidthDiscrepancy
tree
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commitdiff
2020-02-27
Jim Procter
Merge branch 'bug/JAL-3296changeStartInvalidateCursor...
tree
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commitdiff
2020-02-21
gmungoc
JAL-3518 more extraction of ChimeraX commands as overrides
tree
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commitdiff
2020-02-20
gmungoc
JAL-2422 pull-up refactoring of structure commands...
tree
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commitdiff
2020-02-18
Ben Soares
JAL-3449 merge from develop
tree
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commitdiff
2020-02-18
Jim Procter
JAL-3529 test for AC <Uniprot/EMBL> rather than DR...
tree
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commitdiff
2020-02-18
Jim Procter
JAL-3529 assert Uniprot refs must be provided as primar...
tree
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commitdiff
2020-02-17
Ben Soares
JAL-3341 Increase number of lines looked at by test...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3536 failing test and test data
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3531 failing test
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3529 more detailed asserts to detect whitespace...
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3529 failing test for bug
tree
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commitdiff
2020-02-06
gmungoc
JAL-1842 unit test updated for EnsemblGene feature...
bug/JAL-3509hideResnum
tree
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commitdiff
2020-02-04
gmungoc
JAL-2422 pull up refactoring in preparation for Chimera...
tree
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commitdiff
2020-01-29
Ben Soares
JAL-3341 Increase number of lines looked at by test...
tree
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commitdiff
2020-01-28
gmungoc
JAL-3341 debug for failing unit test
bug/JAL-3341unitTestFails
tree
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commitdiff
2020-01-28
gmungoc
Merge branch 'feature/JAL-3121gffAttributeMap' into...
tree
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commitdiff
2020-01-28
gmungoc
JAL-2422 ChimeraX added to Preferences
tree
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commitdiff
2020-01-24
gmungoc
JAL=3121 more data format validation/tests, help text...
feature/JAL-3121gffAttributeMap
tree
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commitdiff
2020-01-23
gmungoc
JAL-3121 'attributes map' in GFF3 without special ...
tree
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commitdiff
2020-01-16
Jim Procter
Merge branch 'improvement/JAL-3449_add_install4j_instal...
tree
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commitdiff
2020-01-14
gmungoc
JAL-2422 proof of concept adaptations for ChimeraX...
tree
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commitdiff
2019-12-13
gmungoc
JAL-2422 basic proof of concept of ChimeraX opened...
tree
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commitdiff
2019-12-12
gmungoc
JAL-3490 unit test for ignore hidden regions with selec...
tree
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commitdiff
2019-12-12
Jim Procter
JAL-2305 moved failing CrossRef tests to Functional_Fai...
tree
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commitdiff
2019-12-11
gmungoc
JAL-3490 tests for skip hidden regions (and a bug fix)
tree
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commitdiff
2019-12-11
gmungoc
JAL-3490 revised layout and search algorithm (more...
tree
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commitdiff
2019-11-29
gmungoc
JAL-3490 Finder match across entirely gapped hidden...
tree
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commitdiff
2019-11-18
Ben Soares
JAL-3477 New sensible default decisions on memory,...
tree
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commitdiff
2019-11-01
gmungoc
JAL-3468 unit tests updated for changes
tree
|
commitdiff
2019-10-10
Ben Soares
JAL-3210 Two fixed tests (previously not compiling)
tree
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commitdiff
2019-10-10
Ben Soares
JAL-3210 Two fixed tests (previously not compiling)
tree
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-08-22
gmungoc
JAL-3121 slightly cleaner parsing of, and unit test...
tree
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commitdiff
2019-08-22
gmungoc
Merge branch 'develop' into feature/JAL-3121gffAttributeMap
tree
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commitdiff
2019-08-22
gmungoc
JAL-3187 case-insensitive codon variant calculation
tree
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commitdiff
2019-08-22
gmungoc
JAL-3121 round trip GFF attributes including map-valued...
tree
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commitdiff
2019-08-19
gmungoc
JAL-3412 calculateIdWidth - more consistency, constants...
tree
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commitdiff
2019-08-09
gmungoc
JAL-3187 removal of variant feature (non-virtual) trans...
tree
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commitdiff
2019-07-26
gmungoc
Merge branch 'features/JAL-3375vcfValidation' into
tree
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commitdiff
2019-07-26
gmungoc
JAL-1793 only decode specific special characters in...
tree
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commitdiff
2019-07-26
gmungoc
JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
features/JAL-3375vcfValidation
tree
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commitdiff
2019-07-26
gmungoc
JAL-3375 format validate VCF Integer and Float fields
tree
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commitdiff
2019-07-25
gmungoc
JAL-3375 ignore '.' values for VCF data
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-07-10
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-08
gmungoc
JAL-3187 derived peptide variants tweaks and tests
tree
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commitdiff
2019-07-05
gmungoc
JAL-1793 apply URL decoding when saving VCF attribute...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3332 test to check for duplicate db sources and...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3330 JAL-3332 relocate and simplify BeforeClass...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3330 test to verify sub/attributeName array is...
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'bug/JAL-2830_editManglesDatasetSequence...
tree
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commitdiff
2019-06-18
gmungoc
JAL-3304 option to export linked features in Jalview...
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into merge...
tree
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commitdiff
2019-06-17
gmungoc
JAL-2792 JAL-3187 linked features (if shown) in Feature...
tree
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commitdiff
2019-06-17
gmungoc
JAL-3187 update alignAs code and unit tests for 'shared...
tree
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commitdiff
2019-06-17
gmungoc
JAL-3187 update unit test - protein variants not now...
tree
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commitdiff
2019-06-17
gmungoc
JAL-3187 add sequence to feature details table (and...
tree
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commitdiff
2019-06-14
gmungoc
JAL-3302 transfer visible 'linked' features to Chimera
tree
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commitdiff
2019-06-10
gmungoc
JAL-3296 ensure sequence cursor reset when sequence...
bug/JAL-3296changeStartInvalidateCursor
tree
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commitdiff
2019-06-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-06-07
gmungoc
JAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
tree
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commitdiff
2019-06-06
gmungoc
JAL-3187 deletions (of Castor code) after merge from...
tree
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commitdiff
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