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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/ test
2023-09-16
Ben Soares
JAL-4269 Now using --width, --height, --scale for both...
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commitdiff
2023-09-13
Ben Soares
JAL-4274 comments to help follow the tests
feature/JAL-4274_configurable_bitmap_export_preferences
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commitdiff
2023-09-13
Ben Soares
JAL-4274 Tests for BIS defaults and overrides
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2023-09-13
Ben Soares
JAL-4274 Use Cache BITMAP_* if no other image restricti...
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2023-09-12
Ben Soares
JAL-4277 No longer using getCanonicalPath() for parent...
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commitdiff
2023-09-12
Ben Soares
JAL-629 updated tests
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commitdiff
2023-09-11
Ben Soares
JAL-4277 --mkdirs with cautious refusal for paths with ..
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commitdiff
2023-09-08
James Procter
JAL-4281 store/restore ID width and manual adjustment...
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commitdiff
2023-09-08
MorellThomas
Properly integrated endGaps option for AlignSeq.traceAl...
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2023-09-07
Ben Soares
Merge branch 'develop' into bug/JAL-4277_dirname_substi...
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2023-09-07
Ben Soares
JAL-4277 fixed and improved tests
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commitdiff
2023-09-07
Ben Soares
JAL-4277 Corrected choice of all or last opened linkedI...
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commitdiff
2023-09-07
James Procter
JAL-4090 JAL-4160 JAL-4274 image export dimensions...
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2023-09-04
James Procter
JAL-4159 JAL-4257 simple test for default gap parameter...
features/JAL-4257_adjustablegapparams_nw
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commitdiff
2023-09-01
James Procter
JAL-4124 add strategic newlines in matrix stringified...
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commitdiff
2023-08-31
James Procter
JAL-4124 comment out incomplete test bits.. for now
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commitdiff
2023-08-31
James Procter
JAL-4124 MappableContactMatrix equivalence and hashCode...
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commitdiff
2023-08-21
James Procter
JAL-4062 a few more tests to check append honours disti...
patch/JAL-4062_sort_and_merge_contiguousregions
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commitdiff
2023-08-21
James Procter
JAL-4062 appendResult(seq,start,end) called by structur...
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2023-08-18
Ben Soares
Merge branch 'feature/JAL-244_Automatically_adjust_left...
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2023-08-11
Ben Soares
JAL-629 Much better way of dealing with list of filenam...
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commitdiff
2023-08-10
Ben Soares
JAL-629 more tests for stdout
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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commitdiff
2023-08-02
Ben Soares
JAL-244 Fix buglet with automatic change in id column...
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commitdiff
2023-08-01
Ben Soares
JAL-244 More control of automatic idWidth adjustments...
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commitdiff
2023-07-27
Ben Soares
Merge branch 'develop' into feature/JAL-244_Automatical...
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commitdiff
2023-07-25
Ben Soares
JAL-244 testing without AlignFrame for --wrap
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2023-07-20
Ben Soares
JAL-244 test files
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2023-07-20
James Procter
JAL-3855 auto select clusters and fix up colouring...
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2023-07-18
James Procter
Merge branch 'develop' into patch/JAL-3855_fixup_pae
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commitdiff
2023-07-18
James Procter
JAL-4153 comments re patch incorrectly committed under...
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commitdiff
2023-07-18
Ben Soares
JAL-4513 move comments
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commitdiff
2023-07-18
Ben Soares
JAL-4513 now re-add the SwingUtilities.invokeAndWait...
bug/JAL-4513_JvCacheableInputBoxTest_flaky_on_build_server
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commitdiff
2023-07-18
James Procter
JAL-3855 JAL-4124 test checks asymmetric matrices are...
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commitdiff
2023-07-18
Ben Soares
JAL-4513 reduce wait to invoke fail
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commitdiff
2023-07-18
Ben Soares
JAL-4513 add a SwingUtilities.invokeAndWait() to see...
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commitdiff
2023-07-17
James Procter
JAL-4217 move Commands.structureImageTest to testTask1
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commitdiff
2023-07-12
James Procter
JAL-4223 - test and patch to ensure numbering matches...
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commitdiff
2023-07-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
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2023-07-07
James Procter
Merge branch 'patch/JAL-4119_sifts_ftp_split' into...
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2023-07-07
James Procter
Merge branch 'develop' into patch/JAL-4195_cli_eps_expo...
patch/JAL-4195_cli_eps_export_npe
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commitdiff
2023-07-07
James Procter
JAL-4195 add exception handling for all other CommandsT...
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commitdiff
2023-07-07
James Procter
JAL-4221 update description when transferring annotatio...
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commitdiff
2023-07-06
James Procter
JAL-2292 verify mixed case alignment actually aligns
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commitdiff
2023-06-22
James Procter
JAL-2292 - ensure mapping is built for equal symbols...
patch/JAL-2292_caseSensitivePAE
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commitdiff
2023-06-08
James Procter
JAL-4196 structure view cli tests wait using new jalvie...
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commitdiff
2023-06-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
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2023-06-07
James Procter
JAL-4195 tidy up desktop instances after creating them
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2023-06-01
Ben Soares
Merge branch 'develop' into improvement/JAL-4193_cl_arg...
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2023-06-01
Ben Soares
JAL-629 changes merged in from develop fixed it. Delet...
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2023-06-01
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
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commitdiff
2023-06-01
Ben Soares
JAL-629 fixing test EBIAlphaFoldTest.checkImportPAEToSt...
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commitdiff
2023-06-01
Ben Soares
JAL-629 added data for test
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2023-06-01
Ben Soares
JAL-4193 JAL-4194 sessionProperties layer in Cache...
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2023-06-01
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
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2023-05-30
Ben Soares
JAL-4121 adjust test name
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2023-05-30
Ben Soares
JAL-4121 slight refactoring of method name and added...
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2023-05-29
James Procter
JAL-4134 JAL-2349 test & fixed implementation(ish)...
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2023-05-29
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
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2023-05-27
Ben Soares
JAL-4121 Added a NPE check caught in tests. Added ...
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2023-05-26
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
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commitdiff
2023-05-25
James Procter
JAL-4134 popup menu and annotation row property to...
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commitdiff
2023-05-25
James Procter
JAL-2381 copy and paste sequence also copies contact...
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commitdiff
2023-05-25
Ben Soares
JAL-4186 fixed a test
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commitdiff
2023-05-23
Ben Soares
JAL-629 Added --structureimage code and formatting...
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commitdiff
2023-05-22
James Procter
Merge branch 'JAL-1551_2_11_3_spotlett' into features...
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2023-05-22
James Procter
JAL-1551 spotless
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commitdiff
2023-05-19
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
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2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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2023-05-18
James Procter
JAL-4134 colour by annotation needs distinct annotation...
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2023-05-18
James Procter
JAL-4134 column grouping model and methods moved to...
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commitdiff
2023-05-18
Ben Soares
JAL-629 Added 'Type' to args and argvalues
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2023-05-17
Ben Soares
JAL-629 Tidy up tests and replaced methods before merge...
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commitdiff
2023-05-17
Ben Soares
JAL-629 delete stray files
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commitdiff
2023-05-17
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
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commitdiff
2023-05-17
James Procter
JAL-4184 failing test for description export and re...
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2023-05-15
James Procter
JAL-4182 failing test
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commitdiff
2023-05-14
James Procter
JAL-2349 fix up tests for Java 11 compatibility and...
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commitdiff
2023-05-14
James Procter
JAL-4134 add tree distance engine test to functional
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commitdiff
2023-05-14
James Procter
JAL-2349 store/restore mappable contact matrix in proje...
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2023-05-13
James Procter
JAL-2349 JAL-3855 PAE tests covers ContactListI.getMapp...
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commitdiff
2023-05-12
James Procter
JAL-2349 allow PAE or other contact matrices to hold...
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commitdiff
2023-05-12
Ben Soares
JAL-629 extra test for --output open*.ext when used...
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commitdiff
2023-05-12
Ben Soares
JAL-629 Added --opened arg which is like limiting ...
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commitdiff
2023-05-11
Ben Soares
JAL-629 Added linkedId to ArgValuesMap for reference...
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2023-05-10
Ben Soares
JAL-629 More docs. Usage statement. Adjust some logging...
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commitdiff
2023-05-05
Ben Soares
JAL-629 test fixes
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commitdiff
2023-05-04
Ben Soares
JAL-629 Moved additional CommandLineOperationsNG tests...
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commitdiff
2023-05-04
Ben Soares
JAL-629 More NG arguments: --features, --annotations...
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commitdiff
2023-05-03
Ben Soares
JAL-629 added eps and imagemap. Added --output and...
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commitdiff
2023-05-02
Ben Soares
JAL-629 Changed --newframe and --allframes to --new...
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commitdiff
2023-05-01
Ben Soares
JAL-629 real life test for --allframes
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2023-04-30
Ben Soares
JAL-629 Change behaviour of --open GLOB to increment...
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commitdiff
2023-04-29
Ben Soares
JAL-629 Added --all arg, [*] linkedId and functionality...
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commitdiff
2023-04-28
Ben Soares
JAL-629 Fixed the argfile1 after subval separator change
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commitdiff
2023-04-28
Ben Soares
JAL-629 Fixed the argfiletests after subval separator...
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commitdiff
2023-04-28
Ben Soares
JAL-629 Fixed the argfile after subval separator change
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commitdiff
2023-04-28
Ben Soares
JAL-629 Change colour scheme shortnames to something...
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commitdiff
2023-04-27
Ben Soares
JAL-629 changed args in tests
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