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Merge branch 'develop' into features/JAL-2446NCList
[jalview.git] / test /
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... tree | commitdiff
2017-05-01 tcofoegbuJAL-2465 unit test for bugfix tree | commitdiff
2017-05-01 gmungocMerge remote-tracking branch tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 don't show occupancy row when testing conserva... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 test for SHOW_OCCUPANCY .jalview_properties... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 test to cover AnnotatedCollectionI.findAnnotat... tree | commitdiff
2017-04-27 gmungocJAL-2492 use SequenceFeatures.getNonPositionalFeatures() tree | commitdiff
2017-04-27 gmungocJAL-2480 don't allow null type in SequenceFeature tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h... tree | commitdiff
2017-04-26 kiramtJAL-2388 Update to hidden columns/column selection... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h... tree | commitdiff
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection tree | commitdiff
2017-04-26 gmungocJAL-2490 findFeaturesAtRes with performant feature... tree | commitdiff
2017-04-26 kiramtJAL-2388 Tidies and unit tests tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 edited unit test code comment tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 Unit test for bug tree | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop tree | commitdiff
2017-04-24 kiramtMerge remote-tracking branch tree | commitdiff
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected... tree | commitdiff
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-04-21 kiramtJAL-2388 Alignment col and row collections with iterators tree | commitdiff
2017-04-20 gmungocJAL-2483 JAL-2481 findAllFeatures without scanning... tree | commitdiff
2017-04-19 gmungocJAL-2480 cache min-max score values per sequence and... tree | commitdiff
2017-04-19 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-04-19 gmungocJAL-2483 use SequenceFeatures to look up groups, types... tree | commitdiff
2017-04-18 gmungocJAL-2480 subtract from total length on deleting feature tree | commitdiff
2017-04-18 gmungocJAL-2480 more test coverage tree | commitdiff
2017-04-18 gmungocJAL-2480 test coverage / bug fixes / javadoc tree | commitdiff
2017-04-18 gmungocJAL-2480 SequenceFeaturesI encapsulates features api tree | commitdiff
2017-04-17 gmungocJAL-2446 promote Range from test to src to replace... tree | commitdiff
2017-04-17 gmungocJAL-2446 tidied up / generalised binary search in Featu... tree | commitdiff
2017-04-17 gmungocJAL-2446 add call to SequenceFeatures.delete(); use... tree | commitdiff
2017-04-12 gmungocJAL-2403 ensure array held in Matrix is immutable tree | commitdiff
2017-04-12 gmungocJAL-2446 getGroups, getFeatures for positional/non... tree | commitdiff
2017-04-11 gmungocJAL-2446 find feature types for one or more groups... tree | commitdiff
2017-04-11 kiramtJAL-2479 Moved some network-dependent unit tests into... bug/JAL-2479unitteststoNetworkGroup tree | commitdiff
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira... tree | commitdiff
2017-04-11 gmungocJAL-2446 getFeatureTypesForGroup() added tree | commitdiff
2017-04-11 gmungocJAL-2446 added getFeatureGroups tree | commitdiff
2017-04-10 gmungocJAL-2403 unit tests for PCA.computeSimilarity, signatur... tree | commitdiff
2017-04-10 gmungocJAL-2416 test updated for reinstatement of '*' row... tree | commitdiff
2017-04-10 gmungocJAL-2446 SequenceFeatures.hasFeatures() added tree | commitdiff
2017-04-10 gmungocJAL-2446 FeatureStore.isEmpty() added tree | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-07 gmungocJAL-2446 fix size maintenance during add tree | commitdiff
2017-04-07 gmungocJAL-2446 added delete/contains to pseudo-random tests... tree | commitdiff
2017-04-06 gmungocJAL-2446 added contains, delete, checks for inclusion... tree | commitdiff
2017-04-06 gmungocJAL-2446 pseudo-random test of findOverlaps, bug fix... tree | commitdiff
2017-04-05 gmungocJAL-2446 various get and find methods added with test... tree | commitdiff
2017-04-04 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-04-03 gmungocJAL-2314 made non-test method non-public bug/JAL-2314 tree | commitdiff
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314 tree | commitdiff
2017-04-03 gmungocJAL-2446 pseudo-random generator unit test, and fixes... tree | commitdiff
2017-03-31 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-03-31 gmungocJAL-2405 additional checks for circular reference in... tree | commitdiff
2017-03-31 gmungocJAL-2472 PrivilegedAccessor added tree | commitdiff
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column... tree | commitdiff
2017-03-30 gmungocJAL-2346 JAL-1933 test updated to include Occupancy tree | commitdiff
2017-03-30 gmungocJAL-2346 always run setup! bug/JAL-2346annotationChoice tree | commitdiff
2017-03-30 gmungocJAL-2346 more test coverage for AnnotationColourGradient tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice tree | commitdiff
2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle... tree | commitdiff
2017-03-29 kiramtJAL-2388 New rendering code, extensions to support... tree | commitdiff
2017-03-29 kiramtJAL-2388 New iterators and tests tree | commitdiff
2017-03-28 gmungocJAL-2403 JAL-2416 pairwise score unexpected symbols... tree | commitdiff
2017-03-28 gmungocJAL-2403 further test coverage for ScoreMatrix, min... tree | commitdiff
2017-03-28 gmungocJAL-2416 more test coverage of matrix parser tree | commitdiff
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex... tree | commitdiff
2017-03-27 gmungocJAL-2416 tidy up after switch from ' ' to '-' in score... tree | commitdiff
2017-03-27 gmungocJAL-2416 score matrix gap symbol (if any) dynamically... tree | commitdiff
2017-03-27 gmungocJAL-2416 add score model description field for tooltip... tree | commitdiff
2017-03-27 gmungocJAL-2416 use '-' not space for gap in score matrices tree | commitdiff
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin... tree | commitdiff
2017-03-24 gmungocJAL-2416 tests added for ScoreMatrix tree | commitdiff
2017-03-24 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-03-24 kiramtJAL-2314 Fixes to DisorderAnnotExportImport test tree | commitdiff
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca... tree | commitdiff
2017-03-23 kiramtJAL-2388 unit test initialisation fix for running full... tree | commitdiff
2017-03-23 kiramtJAL-2314 Tweaks to stop thread sync issues tree | commitdiff
2017-03-23 gmungocJAL-2397 scale PCA by PID to alignment width to match... tree | commitdiff
2017-03-23 gmungocJAL-2393 updated test for removal of PIDDistanceModel tree | commitdiff
2017-03-23 kiramtJAL-2314 Re-annotated unit tests using Jws2Discoverer tree | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-22 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-03-22 gmungocJAL-2311 suppress autocalc'd annotation to isolate... tree | commitdiff
2017-03-21 kiramtJAL-2307 Fixed SiftsClient unit test tree | commitdiff
2017-03-21 gmungocJAL-2306 assert no DAS sources tree | commitdiff
2017-03-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-653_JAL-1766_htslib_refseqsupport tree | commitdiff
2017-03-21 gmungocJAL-2243 update discovered features on opening structur... tree | commitdiff
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
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