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JAL-2079 allow prefix+<XFAMID>+suffix type URL signature
[jalview.git]
/
test
/
2016-01-21
gmungoc
JAL-1705 removed (only) usage of otherwise unused constant
tree
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commitdiff
2016-01-21
gmungoc
JAL-1705 features transferred to CDS sequence; makeExon...
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1479 JAL-1979 updated the modified-aminoacid triple...
tree
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commitdiff
2016-01-21
gmungoc
JAL-1705 tidy and todo comment, no functional change
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commitdiff
2016-01-21
gmungoc
JAL-1705 tests for amended toString
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commitdiff
2016-01-21
gmungoc
JAL-1705 isFromForwardStrand added; toString (for debug...
tree
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commitdiff
2016-01-21
gmungoc
JAL-1705 canonicalise ENSEMBL name; code tidy
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
tree
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commitdiff
2016-01-11
gmungoc
JAL-1989 map hidden column ranges
tree
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commitdiff
2016-01-11
gmungoc
JAL-1989 more unit tests and encapsulation for ColumnSe...
tree
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commitdiff
2016-01-08
gmungoc
JAL-1705 DbSourceProxy properties converted to methods...
tree
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commitdiff
2016-01-07
tcofoegbu
merge
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commitdiff
2016-01-07
tcofoegbu
JAL-1479 implemented timestamp based caching of SIFTS...
tree
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commitdiff
2016-01-05
gmungoc
JAL-653 updating 'align as' tests to match latest tweak...
tree
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commitdiff
2016-01-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-1705_...
tree
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commitdiff
2016-01-05
gmungoc
JAL-1191 check for obsolete term when descriptions...
tree
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commitdiff
2015-12-23
gmungoc
JAL-1191 zipped SO OBO file added to /resources, more...
tree
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commitdiff
2015-12-22
gmungoc
JAL-1191 more test cases
tree
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commitdiff
2015-12-22
gmungoc
JAL-1191 SequenceOntology wrapping/caching SO.OBO via...
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 realise virtual mappings and align when adding...
tree
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commitdiff
2015-12-22
gmungoc
JAL-391 new Calculate options to Reverse, Reverse Compl...
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 AlignedCodonFrame collections changed from...
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commitdiff
2015-12-22
gmungoc
JAL-653 GFF new/refactored helper classes
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commitdiff
2015-12-22
gmungoc
JAL-653 AlignedCodonFrame internal refactor, merge...
tree
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commitdiff
2015-12-03
gmungoc
JAL-653 code tidy / tests for 'realise gff mappings'
tree
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commitdiff
2015-12-03
gmungoc
JAL-653 handle reverse strand mapping in SearchResults...
tree
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commitdiff
2015-12-03
gmungoc
JAL-653 mappings always reside on the dataset alignment...
tree
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commitdiff
2015-12-03
gmungoc
JAL-653 handle reverse strand mappings also
tree
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commitdiff
2015-12-03
gmungoc
JAL-1827 code and comment tidy up
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commitdiff
2015-12-02
gmungoc
JAL-1827 refactored to handle missing residues better
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commitdiff
2015-11-30
gmungoc
JAL-653 test for 'resolving GFF mappings to sequences...
tree
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commitdiff
2015-11-30
gmungoc
JAL-653 (experimental) methods to resolve dummy to...
tree
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commitdiff
2015-11-30
gmungoc
JAL-1270 constructor test added
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commitdiff
2015-11-30
gmungoc
JAL-653 getStrand javadoc/refactor/test
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commitdiff
2015-11-30
gmungoc
JAL-1270 constructor tests added, compiler warnings...
tree
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commitdiff
2015-11-30
gmungoc
JAL-652 further refactoring / tests
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commitdiff
2015-11-30
gmungoc
JAL-652 correct case for test file name
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commitdiff
2015-11-30
gmungoc
JAL-653 MapList constructor merges any contiguous ranges
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commitdiff
2015-11-23
gmungoc
JAL-653 Gff tests moved back in to FeaturesFileTest
tree
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commitdiff
2015-11-22
gmungoc
JAL-653 test for 'groups file' and mixed Jalview/GFF
tree
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commitdiff
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
tree
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commitdiff
2015-11-16
tcofoegbu
JAL-1967 JAL-1479 refactored sequence<->structure mappi...
tree
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commitdiff
2015-11-13
tcofoegbu
JAL-1479 added transfer of residue annotation for SIFTS...
tree
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commitdiff
2015-11-11
tcofoegbu
merge
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commitdiff
2015-11-11
tcofoegbu
JAL-1957 JAL-1479 Further optimisation of SIFTs Client...
features/JAL-1479_SIFTS-mapping
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commitdiff
2015-11-06
gmungoc
JAL-1946 unit tests (and comments) for PID() function
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commitdiff
2015-11-06
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-11-05
tcofoegbu
JAL-1479 SiftClient house keeping
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commitdiff
2015-11-05
tcofoegbu
JAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
tree
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commitdiff
2015-11-02
tcofoegbu
JAL-1955 Uniprot sequence fetcher refactor
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commitdiff
2015-10-30
Jim Procter
JAL-1954 formatting
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commitdiff
2015-10-28
Jim Procter
JAL-1954 test PFAM import results in AlignmentI.hasVali...
tree
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commitdiff
2015-10-28
tcofoegbu
JAL-1479 added support for SIFTs mapping output viewing...
tree
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commitdiff
2015-10-28
tcofoegbu
JAL-1887 JAL-1479 bugfix for incorrect start/end for...
tree
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commitdiff
2015-10-28
gmungoc
JAL-1946 additional unit test cases for PID calculation
tree
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commitdiff
2015-10-22
tcofoegbu
JAL-1479 added basic support for SIFTs mapping - more...
tree
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commitdiff
2015-10-22
gmungoc
JAL-1932 TrimRegionCommand bug fix, tests and purge...
tree
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commitdiff
2015-10-15
Jim Procter
JAL-653 JAL-1766 merge 290b1 - fix erroneous conflicts...
tree
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commitdiff
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-1705_ensembl
tree
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commitdiff
2015-10-15
tcofoegbu
JAL-1479 refactored SequenceI interface - changed getDB...
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 add licensing
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 formatting
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commitdiff
2015-10-08
Jim Procter
JAL-1894 organise imports
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commitdiff
2015-10-05
Jim Procter
Merge branch 'develop' into features/JAL-1912_biojson...
tree
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commitdiff
2015-10-05
tcofoegbu
JAL-1726 updated test error msg
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commitdiff
2015-10-01
tcofoegbu
JAL-1912 refactor annotation refsequence assignemnt...
tree
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commitdiff
2015-09-28
tcofoegbu
JAL-1896 revised implementation to construct a ColourSc...
tree
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commitdiff
2015-09-24
gmungoc
JAL-1905 parse url including & correctly
tree
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commitdiff
2015-09-24
gmungoc
JAL-1904 parse feature file colours on to alignment...
tree
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commitdiff
2015-09-24
tcofoegbu
JAL-1896 bugfix to enabled Jalview restore clustal...
tree
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commitdiff
2015-09-21
gmungoc
JAL-1152 small change to match revised annotation sorti...
tree
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commitdiff
2015-09-18
gmungoc
JAL-1270 disable test as not really a test and goes...
tree
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commitdiff
2015-09-18
Jim Procter
JAL-1270 JAL-1889 move the stevesoft test back into...
tree
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commitdiff
2015-09-16
gmungoc
JAL-1885 small fix to isVersionStringLaterThan plus...
tree
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commitdiff
2015-09-14
gmungoc
JAL-1880 updated mapping tests to ensure they handle...
tree
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commitdiff
2015-09-14
gmungoc
JAL-1270 test added for separatorListToArray
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commitdiff
2015-09-14
gmungoc
JAL-1880 handle sequence offsets properly when mapping...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in test and utils
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-09-09
gmungoc
JAL-1619 'align protein as cDNA' now leaves unmapped...
tree
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commitdiff
2015-09-07
gmungoc
JAL-1636 translate stop codon as '*', mouseover * as...
tree
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commitdiff
2015-09-07
gmungoc
JAL-1152 check 'autocalculated' not 'null sequenceRef...
tree
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commitdiff
2015-09-05
Jim Procter
JAL-1805 move misassigned test from Functional to Network
tree
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commitdiff
2015-09-03
tcofoegbu
merge
tree
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commitdiff
2015-09-03
tcofoegbu
JAL-793 use default custom export settings for html...
tree
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commitdiff
2015-09-03
gmungoc
JAL-1828 lookup table to convert MSE to MET when parsin...
tree
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commitdiff
2015-09-02
gmungoc
JAL-1264 test made i18n robust
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commitdiff
2015-09-02
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-09-02
Jim Procter
JAL-1772 non-functional test added. not doing any more...
tree
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commitdiff
2015-09-02
gmungoc
JAL-1673 new test to verify transferRESNUMFeatures()
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commitdiff
2015-09-02
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-09-01
Jim Procter
JAL-1853 add test to Functional group
tree
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commitdiff
2015-09-01
Jim Procter
JAL-1853 test origin of gapChar bug in AlignView method
tree
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commitdiff
2015-09-01
Jim Procter
JAL-1853 test demonstrating bug
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commitdiff
2015-09-01
gmungoc
JAL-1672 additional assertions added
tree
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commitdiff
2015-08-27
gmungoc
JAL-1270 comments added regarding required remote service
tree
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commitdiff
2015-08-27
gmungoc
JAL-1759 updated unit test for removal of trim on Atom...
tree
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commitdiff
2015-08-27
gmungoc
JAL-1830 tests relocated to AlignViewportTest after...
tree
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commitdiff
2015-08-27
gmungoc
JAL-1627 updated expected tooltip text in unit test
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