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merge of SIFTs Branch
[jalview.git]
/
test
/
2014-04-27
Jim Procter
Merge branch 'JAL-952_rnahelix' into develop
tree
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commitdiff
2014-04-27
Jim Procter
test for JAL-952
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commitdiff
2014-04-25
Jim Procter
Merge branch 'JAL-1177_prop_rnasecstr' into develop
tree
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commitdiff
2014-04-25
Jim Procter
test for JAL-1268
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commitdiff
2014-04-25
Jim Procter
JAL-1177 refactored command line test harness
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commitdiff
2014-04-25
Jim Procter
test for JAL-1177 store and recover RNA secondary struc...
tree
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commitdiff
2014-04-21
Jim Procter
Merge branch 'jims_marckhacks' into develop
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commitdiff
2014-04-21
Jim Procter
JAL-1478 test to demonstrate bug
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commitdiff
2014-04-21
Jim Procter
JAL-1466 improved test and patched off by one that...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1466 new calculation menu option to recover the...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1473 refactor score matrices and tree score calcula...
tree
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commitdiff
2014-02-20
Jim Procter
Merge branch 'JAL-1447' into develop
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commitdiff
2014-02-20
Jim Procter
Merge branch 'JAL-1447' into Release_2_8_1_Branch
tree
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commitdiff
2014-02-20
Jim Procter
test and data for JAL-1447
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commitdiff
2014-02-20
Jim Procter
JAL-1447 - more flexible testing for file format Identi...
tree
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commitdiff
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
tree
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commitdiff
2013-11-07
Jim Procter
Merge branch 'JAL-1286' into develop
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commitdiff
2013-11-07
Jim Procter
Merge branch 'JAL-1286' into Release_2_8_1_Branch
tree
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commitdiff
2013-11-07
Jim Procter
JAL-1286 additional tests to ensure that non-GZ files...
tree
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commitdiff
2013-11-07
Jim Procter
JAL-1286 test input of gzip stream from local file
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commitdiff
2013-10-15
Jim Procter
JAL-1159 Merging 2.8.1 patches and Anne Menards work...
tree
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commitdiff
2013-10-14
Jim Procter
Merge branch 'develop' into dev_from_2_8_1
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commitdiff
2013-09-25
Jim Procter
JAL-1365 test that RNAAliFold service settings are...
tree
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commitdiff
2013-09-25
Jim Procter
formatting
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commitdiff
2013-08-30
Daniel Barton
JAL-1358 Cleaned up RNAalifoldClient.java. RNA helices...
tree
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commitdiff
2013-08-28
Daniel Barton
RNAalifoldClient updated to be more like AAConClient...
tree
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commitdiff
2013-08-27
Daniel Barton
JAL-1358 RNAStructExportImport test file mirrors Disord...
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commitdiff
2013-08-27
Jim Procter
Merge branch 'JAL-1332_regression' into develop
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commitdiff
2013-08-20
Jim Procter
JAL-1353 test demonstrating the freeze with minimal...
tree
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commitdiff
2013-06-21
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
2013-06-21
Jim Procter
Merge branch 'JAL-1294_iupredexportimport' into develop
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commitdiff
2013-06-21
Jim Procter
JAL-1325 formatting
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commitdiff
2013-06-21
Jim Procter
JAL-1294 JAL-1325 test annotation threshold line equiva...
tree
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commitdiff
2013-06-18
Jim Procter
Merge branch 'menard' into develop_m2_8_1_2
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commitdiff
2013-06-18
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
2013-06-18
Jim Procter
JAL-674 tests for PDB ID retrieval and specific chain...
tree
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commitdiff
2013-06-17
Jim Procter
Merge branch 'JAL-1312_ambiguity_na' into develop
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commitdiff
2013-06-17
Jim Procter
JAL-1027 check that ResidueProperties.codonHash2 is...
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1312 formatting and more comprehensive test
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1312 remove unnecessary methods
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commitdiff
2013-06-17
Jim Procter
JAL-529 - IUBMB nucleotide ambiguity codes and programm...
tree
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commitdiff
2013-06-17
Jim Procter
test for JAL-1312
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commitdiff
2013-06-14
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
2013-06-14
Jim Procter
Merge branch 'JAL-1316' into develop
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commitdiff
2013-06-14
Jim Procter
JAL-1316 JAL-1313 newick IO test harness
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commitdiff
2013-06-13
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
2013-06-13
Jim Procter
Merge branch 'JAL-1314_headlessFlag' into develop
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commitdiff
2013-06-13
Jim Procter
JAL-1314 test for common variants of -nodisplay perform...
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commitdiff
2013-06-13
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
2013-06-13
Jim Procter
Merge branch 'JAL-1315_headlessEPS' into develop
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commitdiff
2013-06-13
Jim Procter
JAL-1315 test for exit and successful generation of...
tree
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commitdiff
2013-06-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
2013-06-07
Jim Procter
Merge branch '2_8_1_patch_multiharmony' into develop
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commitdiff
2013-06-07
Jim Procter
JAL-724 JAL-715 refactor and create new test for RSBS...
tree
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commitdiff
2013-06-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
2013-06-07
Jim Procter
Merge branch 'JAL-1161_optimisingAnnotationPanel' into...
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commitdiff
2013-05-26
Jim Procter
JAL-1269 refactored Annotate3d test and added additiona...
tree
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commitdiff
2013-05-24
Jim Procter
Merge branch 'menard' into develop_m2_8_1_2
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commitdiff
2013-05-24
Jim Procter
JAL-1300 test and example data for parsing annotation...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1295 test to demonstrate JAL-1294 (caused by JAL...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1295 refactored Jws2 discovery bootstrap code to...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1295 relaxed test for Annotation element equivalenc...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1295 JAL-1296 clearer assertion failed message
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commitdiff
2013-05-24
Jim Procter
JAL-1295 JAL-1297 enhance test to check graph visiblity...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1296 JAL-1291 JAL-1297 JAL-1295 JAL-1294
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commitdiff
2013-05-24
Jim Procter
JAL-1291 JAL-1297 JAL-1295 JAL-1294 allow alignment...
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commitdiff
2013-05-24
Jim Procter
JAL-1297 JAL-1295 JAL-1294 improve test logic for compa...
tree
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commitdiff
2013-05-21
Jim Procter
Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
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commitdiff
2013-05-21
Jim Procter
split test for general Stockholm IO consistency (JAL...
JAL-1199-Stk_writing
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commitdiff
2013-05-21
Jim Procter
JAL-1199 JAL-1272 remove main() method from test class
tree
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commitdiff
2013-05-21
Jim Procter
formatting
tree
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commitdiff
2013-05-21
Jim Procter
JAL-1199 JAL-1272 refactored Natasha's test to a generi...
tree
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commitdiff
2013-05-13
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStre...
tree
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commitdiff
2013-04-12
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStre...
tree
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commitdiff
2013-02-15
Jim Procter
JAL-1140 JAL-1215 JAL-1272 test import of RNAML and...
tree
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commitdiff
2013-02-15
Jim Procter
split test for general Stockholm IO consistency (JAL...
tree
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commitdiff
2013-02-15
Jim Procter
JAL-1199 JAL-1272 remove main() method from test class
tree
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commitdiff
2013-02-15
Jim Procter
formatting
tree
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commitdiff
2013-02-15
Jim Procter
JAL-1199 JAL-1272 refactored Natasha's test to a generi...
tree
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commitdiff
2013-02-14
Jim Procter
Merge branch 'JAL-1199-Stk_writing' into rnaml_test
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commitdiff
2013-02-13
jprocter
fix merge conflicts for finess on JAL-1140 (introduced...
tree
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commitdiff
2013-02-13
jprocter
JAL-1213 JAL-674 robust test with an existing structure...
tree
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commitdiff
2013-02-13
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
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commitdiff
2013-02-11
jprocter
upgrade to latest paradise services model using JSon...
tree
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commitdiff
2013-02-06
jprocter
Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
tree
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commitdiff
2013-02-06
jprocter
JAL-1199 added test for Rfam Stockholm file example
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commitdiff
2013-02-06
jprocter
JAL-1199 refactored stockholm test code from main class...
tree
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commitdiff
2013-01-20
jprocter
Merge branch 'Dbfetch_hotfix-JAL-1238' into develop
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commitdiff
2013-01-18
jprocter
JAL-1238 test to see if the primary Uniprot source...
tree
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commitdiff
2012-12-07
jprocter
proxy commit for Anne Menard <menard.annec@gmail.com...
tree
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commitdiff
2012-12-04
jprocter
JAL-1140 - IO classes should only raise generic IOExcep...
tree
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commitdiff
2012-12-04
jprocter
JAL-1213 JAL-674 robust test with an existing structure...
tree
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commitdiff
2012-12-04
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
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commitdiff
2012-11-18
jprocter
JAL-1205 JAL-1140 generalised exception for Anne's...
tree
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commitdiff
2012-11-17
jprocter
Merge branch 'develop' into menard
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commitdiff
2012-11-17
jprocter
simple HTTP multipart entity poster - may not be useful
tree
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commitdiff
2012-11-17
jprocter
tests for jalview.analysis.AlignSeq
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commitdiff
2012-11-15
Paolo Di Tommaso
Fixed T-Coffee file scores parser to support extended...
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commitdiff
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