merge of SIFTs Branch
[jalview.git] / test /
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into develop
2014-04-27 Jim Proctertest for JAL-952
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into develop
2014-04-25 Jim Proctertest for JAL-1268
2014-04-25 Jim ProcterJAL-1177 refactored command line test harness
2014-04-25 Jim Proctertest for JAL-1177 store and recover RNA secondary struc...
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop
2014-04-21 Jim ProcterJAL-1478 test to demonstrate bug
2014-04-21 Jim ProcterJAL-1466 improved test and patched off by one that...
2014-04-21 Jim ProcterJAL-1466 new calculation menu option to recover the...
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula...
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into develop
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into Release_2_8_1_Branch
2014-02-20 Jim Proctertest and data for JAL-1447
2014-02-20 Jim ProcterJAL-1447 - more flexible testing for file format Identi...
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into develop
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into Release_2_8_1_Branch
2013-11-07 Jim ProcterJAL-1286 additional tests to ensure that non-GZ files...
2013-11-07 Jim ProcterJAL-1286 test input of gzip stream from local file
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work...
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1
2013-09-25 Jim ProcterJAL-1365 test that RNAAliFold service settings are...
2013-09-25 Jim Procterformatting
2013-08-30 Daniel BartonJAL-1358 Cleaned up RNAalifoldClient.java. RNA helices...
2013-08-28 Daniel BartonRNAalifoldClient updated to be more like AAConClient...
2013-08-27 Daniel BartonJAL-1358 RNAStructExportImport test file mirrors Disord...
2013-08-27 Jim ProcterMerge branch 'JAL-1332_regression' into develop
2013-08-20 Jim ProcterJAL-1353 test demonstrating the freeze with minimal...
2013-06-21 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-21 Jim ProcterMerge branch 'JAL-1294_iupredexportimport' into develop
2013-06-21 Jim ProcterJAL-1325 formatting
2013-06-21 Jim ProcterJAL-1294 JAL-1325 test annotation threshold line equiva...
2013-06-18 Jim ProcterMerge branch 'menard' into develop_m2_8_1_2
2013-06-18 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-18 Jim ProcterJAL-674 tests for PDB ID retrieval and specific chain...
2013-06-17 Jim ProcterMerge branch 'JAL-1312_ambiguity_na' into develop
2013-06-17 Jim ProcterJAL-1027 check that ResidueProperties.codonHash2 is...
2013-06-17 Jim ProcterJAL-1312 formatting and more comprehensive test
2013-06-17 Jim ProcterJAL-1312 remove unnecessary methods
2013-06-17 Jim ProcterJAL-529 - IUBMB nucleotide ambiguity codes and programm...
2013-06-17 Jim Proctertest for JAL-1312
2013-06-14 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-14 Jim ProcterMerge branch 'JAL-1316' into develop
2013-06-14 Jim ProcterJAL-1316 JAL-1313 newick IO test harness
2013-06-13 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-13 Jim ProcterMerge branch 'JAL-1314_headlessFlag' into develop
2013-06-13 Jim ProcterJAL-1314 test for common variants of -nodisplay perform...
2013-06-13 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-13 Jim ProcterMerge branch 'JAL-1315_headlessEPS' into develop
2013-06-13 Jim ProcterJAL-1315 test for exit and successful generation of...
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-07 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop
2013-06-07 Jim ProcterJAL-724 JAL-715 refactor and create new test for RSBS...
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into...
2013-05-26 Jim ProcterJAL-1269 refactored Annotate3d test and added additiona...
2013-05-24 Jim ProcterMerge branch 'menard' into develop_m2_8_1_2
2013-05-24 Jim ProcterJAL-1300 test and example data for parsing annotation...
2013-05-24 Jim ProcterJAL-1295 test to demonstrate JAL-1294 (caused by JAL...
2013-05-24 Jim ProcterJAL-1295 refactored Jws2 discovery bootstrap code to...
2013-05-24 Jim ProcterJAL-1295 relaxed test for Annotation element equivalenc...
2013-05-24 Jim ProcterJAL-1295 JAL-1296 clearer assertion failed message
2013-05-24 Jim ProcterJAL-1295 JAL-1297 enhance test to check graph visiblity...
2013-05-24 Jim ProcterJAL-1296 JAL-1291 JAL-1297 JAL-1295 JAL-1294
2013-05-24 Jim ProcterJAL-1291 JAL-1297 JAL-1295 JAL-1294 allow alignment...
2013-05-24 Jim ProcterJAL-1297 JAL-1295 JAL-1294 improve test logic for compa...
2013-05-21 Jim ProcterMerge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
2013-05-21 Jim Proctersplit test for general Stockholm IO consistency (JAL... JAL-1199-Stk_writing
2013-05-21 Jim ProcterJAL-1199 JAL-1272 remove main() method from test class
2013-05-21 Jim Procterformatting
2013-05-21 Jim ProcterJAL-1199 JAL-1272 refactored Natasha's test to a generi...
2013-05-13 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre...
2013-04-12 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre...
2013-02-15 Jim ProcterJAL-1140 JAL-1215 JAL-1272 test import of RNAML and...
2013-02-15 Jim Proctersplit test for general Stockholm IO consistency (JAL...
2013-02-15 Jim ProcterJAL-1199 JAL-1272 remove main() method from test class
2013-02-15 Jim Procterformatting
2013-02-15 Jim ProcterJAL-1199 JAL-1272 refactored Natasha's test to a generi...
2013-02-14 Jim ProcterMerge branch 'JAL-1199-Stk_writing' into rnaml_test
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced...
2013-02-13 jprocterJAL-1213 JAL-674 robust test with an existing structure...
2013-02-13 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data...
2013-02-11 jprocterupgrade to latest paradise services model using JSon...
2013-02-06 jprocterMerge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
2013-02-06 jprocterJAL-1199 added test for Rfam Stockholm file example
2013-02-06 jprocterJAL-1199 refactored stockholm test code from main class...
2013-01-20 jprocterMerge branch 'Dbfetch_hotfix-JAL-1238' into develop
2013-01-18 jprocterJAL-1238 test to see if the primary Uniprot source...
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com...
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep...
2012-12-04 jprocterJAL-1213 JAL-674 robust test with an existing structure...
2012-12-04 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data...
2012-11-18 jprocterJAL-1205 JAL-1140 generalised exception for Anne's...
2012-11-17 jprocterMerge branch 'develop' into menard
2012-11-17 jproctersimple HTTP multipart entity poster - may not be useful
2012-11-17 jproctertests for jalview.analysis.AlignSeq
2012-11-15 Paolo Di TommasoFixed T-Coffee file scores parser to support extended...
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