2017-05-29 |
Jim Procter | Merge branch 'features/JAL-2465_No-mapping_Jmol-structu... |
tree | commitdiff |
2017-05-29 |
Jim Procter | JAL-2465 fixed groups for JmolViewerTest.testStructureL... |
tree | commitdiff |
2017-05-29 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-29 |
gmungoc | JAL-2526 Sequence.findPositions to get residue position... |
tree | commitdiff |
2017-05-27 |
Jim Procter | Merge branch 'bug/JAL-2491' into develop |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2563 failing test to verify SetStatus returns posit... task/JAL-2562_SequenceI.findPosition |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2563 test to verify SetStatus returns -1 so mouseOv... |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2547 JAL-2562 rejig SetStatusMessage return value... |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2526 test and documentation for SeqPanel.setStatus... |
tree | commitdiff |
2017-05-26 |
gmungoc | JAL-2480 move ContiguousI and Range to jalview.datamodel |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
tree | commitdiff |
2017-05-25 |
Jim Procter | Merge branch 'develop' into features/JAL-1648_cache_use... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2505 removed SequenceFeature constructor JAL-1641... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2490 test coverage of empty and null feature group... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 make SequenceFeature type, begin, end, feature... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2506 relocate Uniprot binding classes, bind to... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 remove setters for SequenceFeature.begin,end... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2529 add object_type=cdna to EnsemblCdna parameters |
tree | commitdiff |
2017-05-24 |
gmungoc | Merge branch 'bug/JAL-2541cutWithFeatures' into feature... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 JAL-2542 SequenceFeatures.shift() to shift... |
tree | commitdiff |
2017-05-24 |
kiramt | JAL-2034 Added isDefined flag to SequenceGroup |
tree | commitdiff |
2017-05-23 |
Jim Procter | JAL-2549 RNAAliFold result to annotation file roundtrip... features/JAL-2549_updateJABAWSto220 |
tree | commitdiff |
2017-05-23 |
Jim Procter | JAL-2549 skip ‘Unrecognised Service’ which resolves... |
tree | commitdiff |
2017-05-23 |
Jim Procter | JAL-2549 replace JABAWS 2.1 with 2.2 client and remove... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 find features for export as GFF, JAL-2548... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 test coverage for printGffFormat before refact... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 unit tests for getFeaturesForGroup |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 tidy code and tests for feature export in... |
tree | commitdiff |
2017-05-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2544 unit tests for sort by feature score |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2546 JAL-2490 efficient lookup of features, correct... |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2490 add non-positional feature case to test prior... |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2480 always include all non-positional features... |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2490 performant lookup of features for sorting |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2505 unit test for sort by feature density, Javadoc |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2541 initial unit tests for edit cut relocate features |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2541 fix to initSeqFrom (and minor code tidy);... |
tree | commitdiff |
2017-05-18 |
kiramt | JAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256 |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 set helix number as feature group in SequenceF... |
tree | commitdiff |
2017-05-16 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 additional tests/asserts prior to refactoring |
tree | commitdiff |
2017-05-16 |
kiramt | Merge branch 'develop' into bug/JAL-2491 |
tree | commitdiff |
2017-05-16 |
kiramt | JAL-2491 Better merge |
tree | commitdiff |
2017-05-16 |
Jim Procter | Merge branch 'bug/JAL-2507_rnasecstrstockholm' into... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm |
tree | commitdiff |
2017-05-15 |
Jim Procter | Merge branch 'bug/JAL-2507_rnasecstrstockholm' into... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2311 disable and relocate Jared service tests to... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 - required callers to specify exact ignore... |
tree | commitdiff |
2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-15 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-05-15 |
kiramt | JAL-2491 Tests |
tree | commitdiff |
2017-05-12 |
kiramt | JAL-2491 Tidies to Overview panel calls in light of... |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2525 get sequence features for Ontology term(s... |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2480 more efficient contains check on add; tidied... |
tree | commitdiff |
2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
tree | commitdiff |
2017-05-12 |
kiramt | JAL-2491 Unit test updates |
tree | commitdiff |
2017-05-11 |
Jim Procter | JAL-2507 JAL-2509 allow whitespace==null for annotation... |
tree | commitdiff |
2017-05-11 |
kiramt | JAL-2491 Unit tests and updates |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2509 verify stockholm parser’s bracket regex is... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 JAL-2509 extend test to cover round trip of... |
tree | commitdiff |
2017-05-09 |
tcofoegbu | JAL-2520 unit test for improvement to download structur... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 simplify round trip test via AppletFormatAdapter |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 test for alignment+rna annotation -> Stockholm... |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-2403 use preferred factory method to create score... |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-2480 include sequenceFeatureStore in createDatasetS... |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-2483 JAL-2481 fixed findAllFeatures to handle null... |
tree | commitdiff |
2017-05-08 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-08 |
tcofoegbu | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-05-08 |
kiramt | JAL-2512 And corresponding test bug/JAL-2512 |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
tree | commitdiff |
2017-05-04 |
tcofoegbu | JAL-1648 resolved CR-JAL-41 review issues |
tree | commitdiff |
2017-05-04 |
Jim Procter | Merge branch 'features/JAL-2503_filteronquantitativeann... |
tree | commitdiff |
2017-05-04 |
Jim Procter | Merge branch 'features/JAL-2393customMatrices' into... |
tree | commitdiff |
2017-05-04 |
Jim Procter | JAL-1656 make RNAML->Stockholm round trip test pass... |
tree | commitdiff |
2017-05-04 |
Jim Procter | JAL-2507 JAL-2509 allow differences in visibility of... |
tree | commitdiff |
2017-05-04 |
Jim Procter | JAL-2507 JAL-2509 new assert to compare secondary struc... |
tree | commitdiff |
2017-05-04 |
Jim Procter | Merge branch 'features/JAL-2503_filteronquantitativeann... |
tree | commitdiff |
2017-05-04 |
Jim Procter | Merge branch 'features/JAL-2393customMatrices' into... |
tree | commitdiff |
2017-05-03 |
Jim Procter | JAL-2503 AlignmentAnnotation.isQuantitative() test |
tree | commitdiff |
2017-05-03 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-03 |
gmungoc | JAL-2246 basic sanity test of fetching example accessions |
tree | commitdiff |
2017-05-03 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-03 |
gmungoc | JAL-2246 test a Uniprot fetch |
tree | commitdiff |
2017-05-03 |
gmungoc | JAL-2485 JAL-2246 test Uniprot FTS summary |
tree | commitdiff |
2017-05-02 |
Jim Procter | JAL-2424 fixme’s removed |
tree | commitdiff |
2017-05-02 |
Jim Procter | JAL-2424 update assert to correct width for normalising... |
tree | commitdiff |
2017-05-02 |
Jim Procter | JAL-2424 resolved, assert updated to pass (1f != 1d) |
tree | commitdiff |
2017-05-02 |
Jim Procter | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-05-02 |
Jim Procter | Merge branch 'bug/JAL-2424getVisibleContigs' into develop |
tree | commitdiff |
2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside... |
tree | commitdiff |
2017-05-02 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-05-01 |
tcofoegbu | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-05-01 |
tcofoegbu | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-05-01 |
tcofoegbu | JAL-2482 unit test for bug fix |
tree | commitdiff |
2017-05-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-01 |
gmungoc | JAL-2489 JAL-2371 reinstate calls to |
tree | commitdiff |
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