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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/ utils
2024-05-13
Ben Soares
JAL-1054 Add wrappers for URL.openConnection(), URL...
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commitdiff
2024-05-10
Ben Soares
JAL-4409 Add jalviewhttp and jalviewhttps schemes to...
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commitdiff
2023-12-01
Ben Soares
JAL-4243 Updated bio.tools record and JSON (version...
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commitdiff
2023-11-30
Ben Soares
JAL-4344 careful application of -Djava.awt.headless...
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2023-11-16
Ben Soares
JAL-4243 Updated bio.tools record for 2.11.3.0
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commitdiff
2023-11-13
James Procter
JAL-4090 JAL-1551 source license
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commitdiff
2023-08-31
Ben Soares
JAL-3830 Remove dock icon for -h too
improvement/JAL-3830_remove_dock_icon_in_headless_mode
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commitdiff
2023-08-17
Ben Soares
JAL-3830 JAL-4160 Remove --noheadless as --gui does...
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commitdiff
2023-08-16
Ben Soares
JAL-3830 JAL-3421 Conda launch script for 2.11.3 and...
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commitdiff
2023-08-16
Ben Soares
Merge branch 'develop' into improvement/JAL-3830_remove...
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commitdiff
2023-08-16
Ben Soares
JAL-4160 JAL-3830 Improvements to the jalview.sh bash...
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commitdiff
2023-07-28
Ben Soares
JAL-4064 Added more recognisable display names to macOS...
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commitdiff
2023-07-22
James Procter
JAL-4243 Jalview 2.11.2.7’s biotool record as JSON...
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commitdiff
2023-06-16
Ben Soares
JAL-3830 Take account of --gui taking precedence over...
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commitdiff
2023-06-16
Ben Soares
JAL-3830 Look for --headless mode and add -Djava.awt...
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commitdiff
2023-06-08
Ben Soares
JAL-3599 gradle tasks to test JalviewJS launches in...
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commitdiff
2023-06-02
Ben Soares
JAL-3521 Updated debian build.gradle in utils/debian...
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commitdiff
2023-05-25
Ben Soares
JAL-3416 JAL-3820 FlatLaf default for everyone, includi...
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commitdiff
2023-05-25
Ben Soares
JAL-3416 better path name
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commitdiff
2023-05-25
Ben Soares
JAL-3820 JAL-3830 improvements to script launching...
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commitdiff
2023-05-25
Ben Soares
JAL-3820 Create and use 'Jalview app' symblinks to...
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commitdiff
2023-05-20
Ben Soares
JAL-4187 JAL-629 JAL-3830 adjustments to Cygwin and...
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commitdiff
2023-05-19
Ben Soares
JAL-4187 JAL-629 JAL-3830 Fix ArgParser to check for...
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commitdiff
2023-05-19
Ben Soares
JAL-629 Updated debian helpers for new command line
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commitdiff
2023-05-19
Ben Soares
JAL-629 Updated launching scripts to 1) not insert...
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commitdiff
2023-05-13
Ben Soares
JAL-629 launcher shell script uses jalview.bin.Launcher...
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commitdiff
2023-04-22
Ben Soares
JAL-629 Test and fix --annotation --ssannotation args...
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commitdiff
2023-02-22
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
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commitdiff
2023-02-22
Ben Soares
JAL-4064 JAL-4054 Corrected the tgz top-level dir from...
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commitdiff
2023-02-22
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
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commitdiff
2023-02-20
Ben Soares
JAL-4064 JAL-4054 Correct names of mac arch installer...
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commitdiff
2023-02-20
Ben Soares
Merge branch 'develop' into improvement/JAL-4111_suffix...
improvement/JAL-4111_suffixed_DEVELOP_channels
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commitdiff
2023-02-16
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
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commitdiff
2023-01-26
Ben Soares
JAL-629 helper eclipse CLI run
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commitdiff
2023-01-06
Ben Soares
JAL-3416 Fix file permissions on bundled macOS JREs
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commitdiff
2023-01-06
Ben Soares
JAL-4111 Added commit and date text to splashscreens...
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commitdiff
2023-01-05
Ben Soares
JAL-4111 improvement to convert -draw argument
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commitdiff
2023-01-05
Ben Soares
JAL-4111 Use ImageMagick to add commit and build time...
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commitdiff
2023-01-05
Ben Soares
JAL-4111 Fixed channel.props to allow replacement of...
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commitdiff
2023-01-05
Benedict Soares...
JAL-4111 fixed DMG background image for generic Develop...
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2022-12-22
Ben Soares
JAL-4111 Allow -PCHANNEL=DEVELOP-version for new appbas...
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2022-11-04
Ben Soares
JAL-4064 JAL-4054 Combined install4j10 template with...
improvement/JAL-4064_Addition_of_macOS_AARCH64_native_DMG
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commitdiff
2022-11-04
Ben Soares
JAL-4054 Altered file association templates and generat...
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commitdiff
2022-11-01
Ben Soares
JAL-4064 re-added bundled macOS JREs as Filesets, which...
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2022-11-01
Ben Soares
JAL-4064 Cleaned up file sets in install4j template...
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commitdiff
2022-11-01
Ben Soares
JAL-4064 Download JRE/JDKs from Azul if not os/arch...
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2022-05-09
Ben Soares
JAL-4004 Temporary mechanism to add JalviewJS link...
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commitdiff
2022-05-09
Ben Soares
JAL-3989 Code tidying, added JVL_HEADER for older versi...
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commitdiff
2022-05-05
Ben Soares
JAL-4004 Now generating hugo files from help/markdown/...
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2022-05-03
Ben Soares
JAL-3989 improved parsing and formatting now using...
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2022-04-27
Ben Soares
JAL-3989 Populate template files for hugo build: archiv...
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2022-04-25
Ben Soares
JAL-3989 moved getdown build dirs to build/website...
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2022-03-31
Ben Soares
Merge branch 'task/JAL-3553_improved_install4j_output_t...
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2022-03-18
Ben Soares
JAL-3978 New tasks to build archive 'old' dir with...
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commitdiff
2022-03-16
Ben Soares
JAL-3978 task stub and getdown splash screens
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commitdiff
2022-03-10
Jalview Developmen...
JAL-3796 include entitlements when codesigning for...
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commitdiff
2022-03-02
Ben Soares
JAL-3962 Added jre/bin and dist folders to the native...
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commitdiff
2022-03-02
Ben Soares
JAL-3130 updated download_jres.sh
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commitdiff
2022-02-23
Jalview Developmen...
JAL-3796 additional steps for notarization
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commitdiff
2022-01-29
Ben Soares
JAL-3830 JAL-3420 added new jvl_file to install4j9...
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commitdiff
2022-01-29
Ben Soares
Merge branch 'develop' into improvement/JAL-3830_instal...
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2022-01-28
Ben Soares
new jvl_file svg, png, ico and icns files, and changed...
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2022-01-27
Jim Procter
Merge branch 'bug/JAL-3633_read_proxy_settings_from_jal...
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commitdiff
2021-12-07
Ben Soares
JAL-3930 Added a customizedId="JALVIEW" to launcher...
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commitdiff
2021-12-07
Ben Soares
JAL-3930 Added a customizedId="JALVIEW" to launcher...
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commitdiff
2021-11-29
Ben Soares
JAL-3594 correct Jalview Develop logo SVG added in...
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commitdiff
2021-11-19
Ben Soares
JAL-3553 now creating a json file for use on website...
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commitdiff
2021-11-16
Ben Soares
JAL-3553 added customized labels for install4j output.txt
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commitdiff
2021-11-16
Ben Soares
JAL-3553 improve the labels in install4j's output.txt...
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commitdiff
2021-11-01
Ben Soares
JAL-3907 added creation of symbolic links to workaround...
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commitdiff
2021-10-28
Ben Soares
JAL-3830 forgot to uncheck this
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commitdiff
2021-10-28
Ben Soares
JAL-3830 polished setup app for macos
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commitdiff
2021-10-27
Ben Soares
JAL-3830 quick fix to installer text
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commitdiff
2021-10-27
Ben Soares
JAL-3830 install4j9 tries to parse and can't cope with...
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commitdiff
2021-10-26
Ben Soares
JAL-3830 Added steps for install4j9 to create macOS...
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commitdiff
2021-10-26
Ben Soares
JAL-3907 adjusted download_jdks.sh and download_jres...
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commitdiff
2021-10-01
Ben Soares
Merge branch 'develop' into improvement/JAL-3594_logos_...
improvement/JAL-3594_logos_for_jalview_test
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commitdiff
2021-10-01
Ben Soares
JAL-3594 New Jalview Test logos and .icns/.ico creation...
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commitdiff
2021-09-30
Ben Soares
JAL-3594 Changed logo for Jalview Test
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commitdiff
2021-09-30
Ben Soares
JAL-1260 Added .gbk to GenBank extensions. Added GenBa...
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commitdiff
2021-09-27
Jim Procter
JAL-3746 update the example corefile for jalviewjs
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commitdiff
2021-09-21
Ben Soares
JAL-3521 'Debian-safe' version of minimal build.gradle...
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commitdiff
2021-09-20
Ben Soares
JAL-3521 Created a patch file to transform build.gradle...
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2021-09-20
Ben Soares
JAL-3521 working minimal build.gradle for debian and...
merge/develop_JAL-3521_minimal_build.gradle_file
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commitdiff
2021-09-20
Ben Soares
JAL-3521 not quite working minimal build.gradle for...
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commitdiff
2021-09-14
Jim Procter
JAL-3815 default /etc/jalview_properties under utils...
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commitdiff
2021-09-14
Ben Soares
JAL-3521 Adjusted wrapper shell script and .desktop...
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commitdiff
2021-09-14
Ben Soares
JAL-3521 High quality file icons for jalview associated...
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commitdiff
2021-09-12
Jim Procter
JAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to...
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commitdiff
2021-06-18
Ben Soares
JAL-3594 Updated the Jalview Develop getdown splashscre...
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commitdiff
2021-04-13
Ben Soares
JAL-3830 Improved jalview.bat to find either pwsh.exe...
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commitdiff
2021-03-31
Ben Soares
JAL-3830 BAT file wrapper around powershell, so jalview...
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commitdiff
2021-03-30
Ben Soares
JAL-3830 Follow all SymbolicLinks in Windows powershell...
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commitdiff
2021-03-26
Ben Soares
JAL-3830 delete channel.props and channel.propsv when...
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commitdiff
2021-03-24
Ben Soares
JAL-3830 Moved wrappers to bin/jalview.* and make a...
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commitdiff
2021-03-19
Ben Soares
JAL-3594 Making default .jalview_properties file separa...
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commitdiff
2021-03-17
Ben Soares
JAL-3830 Allow paths to start with '~'. Make path check...
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2021-03-17
Ben Soares
JAL-3830 Now using a single universal bash script ...
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commitdiff
2021-03-17
Ben Soares
JAL-3830 add the windows bash script to getdown files...
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commitdiff
2021-03-17
Ben Soares
JAL-3830 bash script that works in both cygwin and...
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