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2012-05-23	jprocter	todo JAL-1104 : functions to refactor	commit \| commitdiff \| tree
2012-05-23	jprocter	todo: blocked by JAL-1104	commit \| commitdiff \| tree
2012-05-23	jprocter	JAL-958 - ensure logo is rendered even if consensus...	commit \| commitdiff \| tree
2012-05-22	jprocter	update the copy constructor	commit \| commitdiff \| tree
2012-05-22	jprocter	JAL-1065,JAL-1066 propagated notification of colourscheme...	commit \| commitdiff \| tree
2012-05-22	jprocter	JAL-1065,JAL-1066 - propagated 863467bf6c59c0bc5368c8f3a03d9...	commit \| commitdiff \| tree
2012-05-22	jprocter	Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...	commit \| commitdiff \| tree
2012-05-16	jprocter	warning dialog - fixes JAL-1099	commit \| commitdiff \| tree
2012-05-16	jprocter	fixed JAL-1086: pass column index so colourscheme profile...	commit \| commitdiff \| tree
2012-05-16	jprocter	JAL-958 - don't try to draw all zero profiles	commit \| commitdiff \| tree
2012-05-16	jprocter	JAL-958 JAL-1086 formatting and remove old code	commit \| commitdiff \| tree
2012-05-14	jprocter	pack before displaying splashscreen to ensure its preferred...	commit \| commitdiff \| tree
2012-05-14	jprocter	formatting	commit \| commitdiff \| tree
2012-05-14	jprocter	JAL-1097 - ensure replace comma for semicolon always...	commit \| commitdiff \| tree
2012-05-14	jprocter	Merge branch 'JAL-972-jdas' into develop	commit \| commitdiff \| tree
2012-05-14	jprocter	JAL-1075	commit \| commitdiff \| tree
2012-05-14	jprocter	JAL-1061,JAL-1075 - first pass at implementing sequence...	commit \| commitdiff \| tree
2012-05-14	jprocter	clean up old commented code	commit \| commitdiff \| tree
2012-05-14	jprocter	JAL-1095 - todo	commit \| commitdiff \| tree
2012-05-14	jprocter	javadoc	commit \| commitdiff \| tree
2012-05-11	jprocter	JAL-972 workaround for working out source URL for pre...	commit \| commitdiff \| tree
2012-05-11	jprocter	formatting	commit \| commitdiff \| tree
2012-05-11	jprocter	JAL-972 migration from dasobert to jdas registry URLs	commit \| commitdiff \| tree
2012-05-11	jprocter	JAL-972 local do not have a coordsys element with source...	commit \| commitdiff \| tree
2012-05-11	jprocter	JAL-424 TODO: new method signature for local source...	commit \| commitdiff \| tree
2012-05-10	jprocter	JAL-1085 - ensure sequence fetching client waits around...	commit \| commitdiff \| tree
2012-05-10	jprocter	JAL-972 JAL-1084 propagate reference to local authentication...	commit \| commitdiff \| tree
2012-05-10	jprocter	JAL-1083 - graceful failover to single ID query mode...	commit \| commitdiff \| tree
2012-05-10	jprocter	formatting	commit \| commitdiff \| tree
2012-05-10	jprocter	JAL-1083 graceful failover to one ID per sequences...	commit \| commitdiff \| tree
2012-05-10	jprocter	JAL-1075 better layout and info box for source browser	commit \| commitdiff \| tree
2012-05-01	jprocter	JAL-1075 tweak layout and test display for tree based...	commit \| commitdiff \| tree
2012-04-24	jprocter	JAL-1075, JAL-1061, JAL-1064 - introduced second tier...	commit \| commitdiff \| tree
2012-04-24	jprocter	JAL-1064 sequence database sources are stored and retrieved...	commit \| commitdiff \| tree
2012-04-24	jprocter	JAL-972 correct das registry default URL (JDAS automatically...	commit \| commitdiff \| tree
2012-04-24	jprocter	JAL-972 - test to distinguish sources based on age...	commit \| commitdiff \| tree
2012-04-24	jprocter	JAL-1074 fix - missing tag indicating alignments are...	commit \| commitdiff \| tree
2012-04-20	jprocter	JAL-972, JAL-1072 new default dasregistry.org registry...	commit \| commitdiff \| tree
2012-04-20	jprocter	JAL-1064 JAL-671 - add tree based database dialog as...	commit \| commitdiff \| tree
2012-04-20	jprocter	JAL-1064 - hack to create menu item label for each...	commit \| commitdiff \| tree
2012-04-20	jprocter	JAL-1064 - refactor to iterate over many sources associated...	commit \| commitdiff \| tree
2012-04-20	jprocter	JAL-972 - correct name when constructing db-source...	commit \| commitdiff \| tree
2012-04-20	jprocter	(JAL-1071) hacked the square matrix that stores the...	commit \| commitdiff \| tree
2012-04-11	jprocter	dialog for browsing and selecting datasources hierarchically...	commit \| commitdiff \| tree
2012-03-30	jprocter	JAL-1062 - recognise and split off the range qualifier...	commit \| commitdiff \| tree
2012-03-30	jprocter	(JAL-972) format tweak for source information box	commit \| commitdiff \| tree
2012-03-30	jprocter	Merge branch 'JAL-972-dasobert-to-jdas' into JAL-972...	commit \| commitdiff \| tree
2012-03-30	jprocter	(JAL-972) jdas latest build	commit \| commitdiff \| tree
2012-03-30	jprocter	logic bug Signed-off-by: jprocter <jprocter@compbio.dundee.ac.uk>	commit \| commitdiff \| tree
2012-03-28	jprocter	JAL-893 JAL-842 - updated VARNA - fix typo in InstallAnywher...	commit \| commitdiff \| tree
2012-03-28	jprocter	Merge branch 'JAL-976_jabaws2supp' into develop	commit \| commitdiff \| tree
2012-03-28	jprocter	JAL-1060 - prototype GUI with traffic light coding...	commit \| commitdiff \| tree
2012-03-28	jprocter	JAL-1060 - record which services are invalid, valid...	commit \| commitdiff \| tree
2012-03-27	jprocter	formatting	commit \| commitdiff \| tree
2012-03-27	jprocter	JAL-976 - tweak web services gui so empty menus don...	commit \| commitdiff \| tree
2012-03-27	jprocter	(JAL-976) - consistent ordering of services according...	commit \| commitdiff \| tree
2012-03-27	jprocter	JAL-976 - hack to provide consistent ordering of JABAWS2...	commit \| commitdiff \| tree
2012-03-27	jprocter	(JAL-976) refactor JABAWS1 list	commit \| commitdiff \| tree
2012-03-05	jprocter	(JAL-942) comment out non-functional buttons in VARNA	commit \| commitdiff \| tree
2012-03-05	jprocter	(JAL-942) clearer view structure menu entry	commit \| commitdiff \| tree
2012-03-05	jprocter	JAL-942 - sensible name on window	commit \| commitdiff \| tree
2012-03-05	jprocter	JAL-942 - make sure rna structures get a sensible name	commit \| commitdiff \| tree
2012-03-02	jprocter	(JAL-1052) todo for output of RNA consensus lines	commit \| commitdiff \| tree
2012-03-02	jprocter	(JAL-1052) basic consensus line parsing to rna structure...	commit \| commitdiff \| tree
2012-03-02	jprocter	(JAL-1052) make RNA secondary structure string parsing...	commit \| commitdiff \| tree
2012-03-02	jprocter	formatting	commit \| commitdiff \| tree
2012-03-02	jprocter	(JAL-942) more tweaking mapping between 2-struct and...	commit \| commitdiff \| tree
2012-03-02	jprocter	(JAL-842) debug mouseover for sequences that don't...	commit \| commitdiff \| tree
2012-03-02	jprocter	(JAL-842) todo	commit \| commitdiff \| tree
2012-03-02	jprocter	remove unnecessary method	commit \| commitdiff \| tree
2012-03-02	jprocter	efficiency, and ensure mouseover messages originating...	commit \| commitdiff \| tree
2012-03-01	jprocter	(JAL-842) ensure deletions are accounted for when highlighti...	commit \| commitdiff \| tree
2012-03-01	jprocter	(JAL-893) update to VARNAv3.9-dev version	commit \| commitdiff \| tree
2012-03-01	jprocter	Merge branch 'Release_2_7_Branch' into develop	commit \| commitdiff \| tree
2012-03-01	jprocter	debug local source management buttons and formatting	commit \| commitdiff \| tree
2012-03-01	jprocter	revised version of Jdas with simpler connectionPropertyProvi...	commit \| commitdiff \| tree
2012-02-29	jprocter	update to latest build	commit \| commitdiff \| tree
2012-02-29	jprocter	move from dasobert to jdas multithreaded feature fetching...	commit \| commitdiff \| tree
2012-02-29	jprocter	tidy imports and switch over to use das source registry API	commit \| commitdiff \| tree
2012-02-29	jprocter	tidy imports	commit \| commitdiff \| tree
2012-02-29	jprocter	fallout from refactoring registry datamodel to a sourceRegis...	commit \| commitdiff \| tree
2012-02-29	jprocter	(JAL-972) replaced biodas with jdas sources datastructures...	commit \| commitdiff \| tree
2012-02-29	jprocter	refactoring dassequencesource code fallout	commit \| commitdiff \| tree
2012-02-29	jprocter	refactored das sequence source creation code to the...	commit \| commitdiff \| tree
2012-02-29	jprocter	removed excess imports	commit \| commitdiff \| tree
2012-02-29	jprocter	updated das sequence source for jdas client and refactored...	commit \| commitdiff \| tree
2012-02-29	jprocter	JAL-972 - refactored local source builder to registry...	commit \| commitdiff \| tree
2012-02-29	jprocter	JAL-966 todo for jalview 3 api	commit \| commitdiff \| tree
2012-02-29	jprocter	jalview das registry and source api and jdas specific...	commit \| commitdiff \| tree
2012-02-29	jprocter	jdas runtime dependencies	commit \| commitdiff \| tree
2012-02-29	jprocter	updated build of jdas	commit \| commitdiff \| tree
2012-02-29	jprocter	jdas doesn't need a listener for das sequence retrieval...	commit \| commitdiff \| tree
2012-02-13	jprocter	groovy nature not needed in project	commit \| commitdiff \| tree
2012-02-13	jprocter	remove dead imports	commit \| commitdiff \| tree
2012-02-13	jprocter	(JAL-972) relative refs for libraries and some additional...	commit \| commitdiff \| tree
2012-02-13	jprocter	(JAL-972) jdas source retrieval and use of jdas structures...	commit \| commitdiff \| tree
2012-02-13	jprocter	(JAL-972) updated jdas to latest version includign...	commit \| commitdiff \| tree
2012-02-13	jprocter	change over source attribute datamodel	commit \| commitdiff \| tree
2012-02-13	jprocter	removed all dasobert code and begun to replace with...	commit \| commitdiff \| tree
2012-02-12	Jim Procter	(JAL-1016) noted position where race condition occurs	commit \| commitdiff \| tree
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