2018-02-27 |
gmungoc | JAL-2668 method name change for clarity
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2018-02-27 |
gmungoc | JAL-2668 fix broken factory method for colour scheme
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2018-02-27 |
gmungoc | JAL-2717 JAL-2668 fixes to HMMER colour scheme display...
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2018-02-26 |
gmungoc | JAL-2599 test coverage and bug fixes for 'minimal file...
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2018-02-23 |
gmungoc | JAL-2599 corrected case-insensitive symbol indexing
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2018-02-23 |
gmungoc | JAL-2599 parser and datamodel use primitive double...
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2018-02-22 |
gmungoc | JAL-2629 tidy tests, refactor hmmer node mapping slightly
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2018-02-22 |
gmungoc | JAL-2629 tidy unit tests, constants etc
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2018-02-21 |
gmungoc | JAL-2629 simplifying method signatures in Hmmer command...
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2018-02-20 |
gmungoc | JAL-2629 removed SequenceI.get/setLastPosition and...
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2018-02-20 |
gmungoc | Merge branch 'develop' into features/mchmmer
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2018-02-20 |
gmungoc | JAL-2897 updated unit test for code change
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2018-02-20 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
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commit | commitdiff | tree |
2018-02-19 |
gmungoc | JAL-2629 refactoring of Hmmer preferences
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2018-02-19 |
gmungoc | JAL-2629 partial refactoring of Hmmer command classes
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2018-02-19 |
gmungoc | JAL-2629 formatting only
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2018-02-09 |
gmungoc | JAL-2789 avoid using transcript (with no UTR) as CDS...
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2018-02-09 |
gmungoc | JAL-2789 code format changes only (before functional...
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2018-02-09 |
gmungoc | JAL-2666 fix failure to scroll split alignment of height 1
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commit | commitdiff | tree |
2018-02-08 |
gmungoc | JAL-2666 basic initial fix for split screen scroll bug
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commit | commitdiff | tree |
2018-02-07 |
gmungoc | JAL-2808 ensure pattern field re-enabled when needed...
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commit | commitdiff | tree |
2018-02-05 |
gmungoc | JAL-2897 more informative description on synonymous...
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commit | commitdiff | tree |
2018-02-05 |
gmungoc | JAL-2897 more informative description on synonymous...
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2018-02-05 |
gmungoc | Merge branch 'spikes/mungo' into trialMerge
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commit | commitdiff | tree |
2018-02-05 |
gmungoc | JAL-2897 more informative description on synonymous...
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2018-02-02 |
gmungoc | JAL-984 merged to spikes-mungo
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2018-02-02 |
gmungoc | Merge branch 'feature/JAL-984splitAdjuster' into features...
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2018-02-02 |
gmungoc | JAL-2899 asynchronous Jmol colour updates
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2018-02-02 |
gmungoc | JAL-984 use cursor for drag regions to adjust annotation...
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commit | commitdiff | tree |
2018-02-02 |
gmungoc | JAL-984 better behaved panel height adjuster
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2018-02-01 |
gmungoc | JAL-2899 update structure and overview on slider drag...
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2018-01-31 |
gmungoc | JAL-2792 added tooltip to menu items in case of truncation
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2018-01-30 |
gmungoc | JAL-2069 menu item now "Variable colour..." to hint...
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2018-01-30 |
gmungoc | JAL-1793 update spike build to latest incl stop and...
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2018-01-30 |
gmungoc | JAL-2898 show 'stop_gained' variants on peptide sequences
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commit | commitdiff | tree |
2018-01-30 |
gmungoc | JAL-2897 generate peptide variants for synonymous codon...
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2018-01-30 |
gmungoc | JAL-2897 formatting change only prior to functional...
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2018-01-29 |
gmungoc | Merge branch 'feature/JAL-2759' of https://source.jalview...
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commit | commitdiff | tree |
2018-01-29 |
gmungoc | JAL-1270 testPadGaps() added
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commit | commitdiff | tree |
2018-01-29 |
gmungoc | JAL-2743 recoded EnsemblLookup without lambda expressions...
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2018-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
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commit | commitdiff | tree |
2018-01-18 |
gmungoc | JAL-2810 JAL-2886 i18n
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2018-01-18 |
gmungoc | JAL-2679 update query id to actual case of retrieved...
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2018-01-17 |
gmungoc | JAL-2679 case-insensitive comparison of query and retrieved...
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2018-01-16 |
gmungoc | JAL-2679 use object_type=Transcript for lookup of Parent...
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2018-01-16 |
gmungoc | JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
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2018-01-16 |
gmungoc | JAL-1270 JAL-2885 clear properties before load
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2018-01-10 |
gmungoc | JAL-2865 unhelpful System.gc() calls removed
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commit | commitdiff | tree |
2018-01-10 |
gmungoc | JAL-1793 update spike branch to latest
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commit | commitdiff | tree |
2018-01-10 |
gmungoc | JAL-2791 ignore feature type visibility in getColor()
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commit | commitdiff | tree |
2018-01-09 |
gmungoc | JAL-2843 test roundtrip of feature colours and filters...
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commit | commitdiff | tree |
2018-01-09 |
gmungoc | JAL-2843 unit tests for writing filters to Jalview...
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2018-01-09 |
gmungoc | JAL-2843 unit tests for Save/Load colours and filters...
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commit | commitdiff | tree |
2018-01-09 |
gmungoc | JAL-2808 small tweaks to api / Javadoc
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commit | commitdiff | tree |
2018-01-08 |
gmungoc | JAL-2069 fix setting initial value of slider from threshold
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commit | commitdiff | tree |
2017-12-14 |
gmungoc | JAL-2843 missed Castor class
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commit | commitdiff | tree |
2017-12-14 |
gmungoc | JAL-2843 save/restore colour feature by attribute,...
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commit | commitdiff | tree |
2017-12-14 |
gmungoc | JAL-2879 save/restore feature sub-attributes in Jalview...
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commit | commitdiff | tree |
2017-12-14 |
gmungoc | JAL-2843 missed Castor class
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commit | commitdiff | tree |
2017-12-14 |
gmungoc | JAL-2843 and Castor metadata file for latest changes
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commit | commitdiff | tree |
2017-12-14 |
gmungoc | JAL-2843 schema and code changes to save colour by...
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2017-12-13 |
gmungoc | JAL-2843 add isByAttribute to interface for convenience
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commit | commitdiff | tree |
2017-12-11 |
gmungoc | JAL-2843 add colour by attribute, and no value colour...
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commit | commitdiff | tree |
2017-12-08 |
gmungoc | JAL-2843 example filters added
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commit | commitdiff | tree |
2017-12-08 |
gmungoc | JAL-2843 read/write feature filters from/to Jalview...
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commit | commitdiff | tree |
2017-12-08 |
gmungoc | JAL-2843 refactor / tidy for feature filter input/output
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commit | commitdiff | tree |
2017-12-08 |
gmungoc | JAL-2843 methods relocated
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2017-12-08 |
gmungoc | JAL-2843 toStableString, fromString for Jalview features...
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2017-12-08 |
gmungoc | JAL-2843 FeatureRenderer.getFeatureFilters returns...
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commit | commitdiff | tree |
2017-12-05 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
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commit | commitdiff | tree |
2017-12-04 |
gmungoc | JAL-2808 JAL-2850 update spike build to latest
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commit | commitdiff | tree |
2017-12-04 |
gmungoc | Merge branch 'spikes/mungo' into features/JAL-1793VCF
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commit | commitdiff | tree |
2017-12-04 |
gmungoc | JAL-2850 JAL-1766 option to load contig sequence referenced...
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commit | commitdiff | tree |
2017-12-04 |
gmungoc | JAL-2845 locate reverse strand insertion as complement...
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commit | commitdiff | tree |
2017-12-04 |
gmungoc | JAL-2835 small refactor to only extract transcript...
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commit | commitdiff | tree |
2017-12-01 |
gmungoc | JAL-2835 spike updated to latest (use specific SO term...
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commit | commitdiff | tree |
2017-12-01 |
gmungoc | JAL-2835 refactored to extract specific consequence...
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commit | commitdiff | tree |
2017-12-01 |
gmungoc | JAL-2792 sort feature attributes for output, not for...
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commit | commitdiff | tree |
2017-12-01 |
gmungoc | JAL-2835 additional sub-terms of sequence_variant added
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commit | commitdiff | tree |
2017-11-30 |
gmungoc | JAL-2850 improved use of htsjdk api to read contig...
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commit | commitdiff | tree |
2017-11-30 |
gmungoc | JAL-1766 additional tests for stub htsjdk wrapper
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commit | commitdiff | tree |
2017-11-28 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
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commit | commitdiff | tree |
2017-11-28 |
gmungoc | JAL-2850 MapList.isToForwardStrand added
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commit | commitdiff | tree |
2017-11-27 |
gmungoc | JAL-2850 VCFLoader refactored to load VCF to contig...
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commit | commitdiff | tree |
2017-11-24 |
gmungoc | JAL-2808 update spike to latest
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commit | commitdiff | tree |
2017-11-24 |
gmungoc | JAL-2808 refactoring to better handler filter by Score...
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commit | commitdiff | tree |
2017-11-24 |
gmungoc | JAL-2808 relocate constants for compiler, add COLUMN_COUNT...
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commit | commitdiff | tree |
2017-11-24 |
gmungoc | JAL-2808 refine FeatureMatcher interface and matcher...
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commit | commitdiff | tree |
2017-11-24 |
gmungoc | JAL-2808 don't cache i18n - MessageManager already...
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commit | commitdiff | tree |
2017-11-23 |
gmungoc | JAL-2808 update spike to latest (filter range tooltip...
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commit | commitdiff | tree |
2017-11-23 |
gmungoc | JAL-2808 refactor KeyedMatcher as FeatureMatcher with...
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commit | commitdiff | tree |
2017-11-23 |
gmungoc | JAL-2808 update spike to latest (filter range, Present...
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commit | commitdiff | tree |
2017-11-23 |
gmungoc | JAL-2808 removed field filters; sort CSQ data by key
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commit | commitdiff | tree |
2017-11-23 |
gmungoc | JAL-2808 added conditions Present, NotPresent as options
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commit | commitdiff | tree |
2017-11-23 |
gmungoc | JAL-2808 refactor conversion of table data to beans...
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commit | commitdiff | tree |
2017-11-23 |
gmungoc | JAL-2808 pass FeatureSettings to controller as array...
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commit | commitdiff | tree |
2017-11-22 |
gmungoc | JAL-2808 update conditions list on change of attribute...
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commit | commitdiff | tree |
2017-11-22 |
gmungoc | JAL-2069 spike updated with latest (FeatureTypeSettings)
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commit | commitdiff | tree |
2017-11-22 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
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commit | commitdiff | tree |
2017-11-22 |
gmungoc | JAL-2808 JAL-2069 FeatureTypeSettings (with new Filters...
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