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JAL-2738 JAL-2743 update unit test to match new VCF properties
2018-09-18
gmungoc
JAL-3063 Save/Load user colour scheme using JAXB
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2018-09-18
gmungoc
JAL-3063 top level element added to colours schema...
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2018-09-18
gmungoc
JAL-3063 New View via JAXB
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2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load project...
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2018-09-18
gmungoc
JAL-3063 first version of Jalview2XML using JAXB to...
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2018-09-18
gmungoc
JAL-3063 JAXB binding classes generated by xjc from...
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2018-09-18
gmungoc
JAL-3063 tweak schema so JAXB tool xjc recognises XML...
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2018-09-18
gmungoc
JAL-3063 tweak schema so JAXB generates enums for enumerated...
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2018-09-17
gmungoc
JAL-3116 test method renamed to match code
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2018-09-17
gmungoc
JAL-3116 unit tests adapted to EMBL over JAXB
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2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
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2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
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2018-09-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2018-09-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2018-09-12
gmungoc
JAL-1551 reinstated Save actions
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2018-09-10
gmungoc
JAL-3099 use Alignment.getVisibleWidth() where wanted
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2018-09-10
gmungoc
JAL-3099 new method AlignmentI.getVisibleWidth()
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2018-09-10
gmungoc
JAL-3097 adjust viewport width on hiding columns
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2018-09-10
gmungoc
JAL-3108 fix concurrency bug in Reveal action handler
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2018-09-03
gmungoc
Merge branch 'trialMerge' into releases/Release_2_10_5_Branch
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2018-09-03
gmungoc
JAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-08-31
gmungoc
JAL-3003 remove redundant call to drawSelectionGroup
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2018-08-28
gmungoc
JAL-3059 use correct border colour for groups
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2018-08-28
gmungoc
JAL-3003 draw selection group outline on main graphics...
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2018-08-28
gmungoc
JAL-247 comment to clarify wrapped print algorithm
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2018-08-28
gmungoc
JAL-247 print/export wrapped uses common code to draw...
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2018-08-28
gmungoc
JAL-3087 include full alignment height in repeating...
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2018-08-28
gmungoc
JAL-247 draw/print sequence ids now uses common code...
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2018-08-16
gmungoc
JAL-3082 one more test condition
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2018-08-16
gmungoc
JAL-3082 handle regex error, exclusive threshold, unit...
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2018-08-15
gmungoc
JAL-3080 remove tree partition if no groups created
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2018-08-14
gmungoc
JAL-3078 reset Tree font (only!) on Cancel
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2018-08-10
gmungoc
JAL-3018 updated to Ensembl REST 7.0
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2018-08-10
gmungoc
JAL-3076 refactor for more efficient scan of 'gene...
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2018-08-10
gmungoc
JAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-07-25
gmungoc
JAL-3073 select columns if dragging sideways in a graph...
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2018-07-25
gmungoc
JAL-3074 don't scroll up/down on drag out of scale...
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2018-07-25
gmungoc
JAL-3072 SeqPanel.stopScrolling on mouse up in scale...
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2018-07-03
gmungoc
JAL-3054 table tooltip follow mouse in a sensible manner
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2018-06-29
gmungoc
JAL-3049 removed wrong way to set tooltip
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2018-06-29
gmungoc
JAL-3049 JAL-2069 colour icon tooltip including by...
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2018-06-29
gmungoc
JAL-3049 working tooltip on colours column
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2018-06-07
gmungoc
JAL-2755 correct Javadoc and error handling
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2018-06-07
gmungoc
JAL-2920 format/comment tidy
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2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
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2018-06-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' of https...
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2018-06-06
gmungoc
JAL-2920 unit tests for 3 or more original or variant...
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2018-06-06
gmungoc
JAL-3013 ensure Chimera as a symlink gets resolved
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2018-06-04
gmungoc
JAL-2808 update test for revised treatment of 'mixed...
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2018-06-04
gmungoc
JAL-3019 correctly form toRange of 'traversed' MapList
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2018-06-04
gmungoc
JAL-3018 updated REST versions to 6.3
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2018-05-31
gmungoc
JAL-2808 don't capture or report min-max for mixed...
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2018-05-31
gmungoc
JAL-2808 pre-fill numeric inequality filter with min...
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2018-05-28
gmungoc
Merge branch 'bug/JAL-797' into develop
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2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-05-25
gmungoc
JAL-3002 don't use fastPaint for page up/down
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2018-05-25
gmungoc
JAL-2992 simpler heuristic for available height
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2018-05-25
gmungoc
JAL-2995 tooltip on fields with double-click to browse...
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2018-05-25
gmungoc
JAL-2994 temporary patch with paths to Chimera for...
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2018-05-24
gmungoc
JAL-2997 additional tests
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2018-05-23
gmungoc
JAL-2993 AlignFrame listen for keystrokes in OverviewPanel
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2018-05-23
gmungoc
JAL-2997 unit test
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2018-05-23
gmungoc
JAL-2997 handle tab-delimited trailing column number...
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2018-05-21
gmungoc
JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
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2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
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2018-05-21
gmungoc
JAL-437 remove code duplicated by merge
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2018-05-21
gmungoc
JAL-2814 help links from PDB and Uniprot FTS panels
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2018-05-11
gmungoc
JAL-2986 corrected findIndex for out of range residue...
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2018-05-11
gmungoc
JAL-2986 additional asserts for SequenceCursor updates
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2018-05-11
gmungoc
JAL-2986 failing test added
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2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
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2018-05-07
gmungoc
JAL-2808 ensure test setUp/tearDown alwaysRun
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2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-05-07
gmungoc
JAL-1767 unit test for save and restore PCA
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2018-05-07
gmungoc
JAL-1767 scheme DoubleMatrix type includes D and E...
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2018-05-07
gmungoc
JAL-2982 use configured background colour in PCA image...
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2018-05-07
gmungoc
JAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded...
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2018-05-07
gmungoc
JAL-1767 save PCA D and E vectors instead of 'details...
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2018-05-04
gmungoc
JAL-2906 small tweaks to release notes
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2018-05-04
gmungoc
JAL-2975 Shift-arrow keys to rotate PCA incrementally
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2018-05-04
gmungoc
JAL-1767 schema and Castor changes for Save PCA in...
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2018-05-04
gmungoc
JAL-2965 graduate brightness on z-axis from centre...
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2018-05-04
gmungoc
JAL-1767 refactorings to enable faithful restore of...
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2018-05-02
gmungoc
JAL-1767 getters/setters for D and E vectors
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2018-05-01
gmungoc
JAL-1767 include d and e vectors in Matrix.copy()
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2018-04-30
gmungoc
JAL-2965 graduated sequence point colour from back...
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2018-04-27
gmungoc
JAL-2964 tree@linkToAllViews attribute added to project...
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2018-04-27
gmungoc
JAL-2963 correctly dim PCA points with negative z-coordinates
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2018-04-27
gmungoc
JAL-1767 refactoring and tidying of RotatableCanvas...
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2018-04-26
gmungoc
JAL-2962 start on help updates
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2018-04-26
gmungoc
JAL-2962 rename run method (as not a Runnable)
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2018-04-26
gmungoc
JAL-2962 remove Change Parameters menu from PCA panel
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2018-04-26
gmungoc
JAL-2962 option to offer BLOSUM62 for nucleotide PCA
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2018-04-26
gmungoc
JAL-2962 code tidying/documentation (non-functional...
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2018-04-25
gmungoc
JAL-1767 minor field tidying prior to functional changes
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2018-04-24
gmungoc
JAL-2959 no Print dialog shown if Page Format is Cancelled
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2018-04-23
gmungoc
JAL-2954 more efficient SearchResults.markColumns
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2018-04-23
gmungoc
JAL-2952 set negative TempFactor values as AlignmentAnnotati...
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2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-04-18
gmungoc
JAL-2593 render 'duplicate' features if transparency...
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