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New methods in treePanel
2005-09-15
jprocter
Fixed so job submission and job failure errors are...
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2005-09-05
jprocter
More informative error messages.
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2005-08-25
jprocter
html typo
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2005-08-25
jprocter
more informative clustal colourscheme doco.
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2005-08-22
jprocter
jalview-dev doesn't exist.
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2005-08-22
jprocter
regenerated stubs from wsdl and removed old vamsas...
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2005-08-22
jprocter
regenerated from wsdl.
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2005-08-22
jprocter
Replaced by jpred.java and associated stubs.
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2005-08-22
jprocter
fixed hanging on job finished bug.
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2005-08-22
jprocter
tidied client and fixed non-unique msa bug (lead to...
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2005-08-22
jprocter
fixed uniquify seq[]
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2005-08-22
jprocter
regenerated Jpred stubs and tidied client thread.
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2005-08-22
jprocter
comment on WORD_SEP values
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2005-08-18
jprocter
made changes to DEFAULT_BROWSER in user preferences...
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2005-08-18
jprocter
changed first clicked to nearest the top of the alignment.
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2005-08-18
jprocter
typo
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2005-08-18
jprocter
moved to clustalw.html
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2005-08-18
jprocter
typo fixes.
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2005-08-18
jprocter
error checking, sanitization and properties support.
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2005-08-18
jprocter
GUI typo
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2005-08-18
jprocter
typo - Muscle->JNet
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2005-08-18
jprocter
Jpred to JNet
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2005-08-18
jprocter
various case sensitivity bugs fixed in residue comparison...
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2005-08-17
jprocter
Client threads for discovered web services.
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2005-08-17
jprocter
GUI modifications for service discovery.
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2005-08-17
jprocter
Gui Modifications for Service Discovery.
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2005-08-17
jprocter
<No Comment Entered>
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2005-08-17
jprocter
Maintain list of webservices and query any Service...
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2005-08-17
jprocter
Simple Registry Service stubs
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2005-08-17
jprocter
Fixed basic name to sequence ID matching (bug http...
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2005-08-12
jprocter
fixed leafMapping bug for Id's like SequenceX (where...
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2005-07-11
jprocter
added help and documentation for annotation editing.
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2005-06-16
jprocter
jalview-dev@jalview.org is the right email address?
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2005-06-16
jprocter
renamed menu for jPred to Jnet.
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2005-06-16
jprocter
separated alignment menu bits.
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2005-06-16
jprocter
more doco.
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2005-06-16
jprocter
moved clustal to clustalw
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2005-06-16
jprocter
lots of tidying in doco.
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2005-06-16
jprocter
better clustalw reference
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2005-06-16
jprocter
export moved to its own file.
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2005-06-16
jprocter
export alignment
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2005-06-16
jprocter
feredoxin startup alignment with a tree.
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2005-06-16
jprocter
more menu doco.
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2005-06-15
jprocter
first jalarchive entry.
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2005-06-14
jprocter
de-os-specificised some bits. Commented the file association...
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2005-06-14
jprocter
removes jarsign.
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2005-06-14
jprocter
help file bits.
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2005-06-14
jprocter
pad-1 gaps fixed.
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2005-06-14
jprocter
slight modification to srs query so it takes both uniprot...
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2005-06-14
jprocter
Arbitrary decision to keep friendly id name when reading...
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2005-06-13
jprocter
null pointer fix.
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2005-06-10
jprocter
added logs.Castor.level
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2005-06-10
jprocter
added castor logger configuration.
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2005-06-10
jprocter
removed exception name from server error state (to...
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2005-06-08
jprocter
style change.
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2005-06-08
jprocter
heading
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2005-06-08
jprocter
punctuation (sorry ;-)
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2005-06-08
jprocter
grammar.
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2005-06-08
jprocter
unterminated ul
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2005-06-08
jprocter
nicer help.
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2005-06-07
jprocter
more truthful comment.
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2005-06-07
jprocter
quickie build instructions.
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2005-06-07
jprocter
very basic code convention. no licensing/stripping...
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2005-06-07
jprocter
better code convention name
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2005-06-07
jprocter
jalopy is used for sourcescrub target of build.xml...
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2005-06-07
jprocter
removed signature for this jar
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2005-06-07
jprocter
loads of changes. Jalopy source formatting, better...
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2005-06-07
jprocter
added a couple of debug statements for unix browser...
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2005-06-05
jprocter
made error for browser configuration on unix a bit...
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2005-06-05
jprocter
firefox now default for unixen.
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2005-06-05
jprocter
more subtle rearrangements
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2005-06-03
jprocter
Reinstated 'create tree from selected region only'...
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2005-06-02
jprocter
tidied the exceptions and ws server error behaviour
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2005-06-02
jprocter
minor changes to make jalopy happy
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2005-06-02
jprocter
minor changes to try and make jalopy happy
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2005-05-31
jprocter
Moved comment so it doesn't break jalopy (this is not...
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2005-05-30
jprocter
added the sorting entry to calculations, and corrected...
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2005-05-30
jprocter
Changed sortByPID to use the gapped PID function.
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2005-05-30
jprocter
comments
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2005-05-30
jprocter
Added clustalW 'realignment' (primitive)
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2005-05-30
jprocter
added default ClustalWS or MuscleWS to remove gaps.
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2005-05-30
jprocter
propagated use of jalview.util.GapChars for gap removal.
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2005-05-30
jprocter
more robust parsing for DBset/DBname|id1|id2 type ids
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2005-05-30
jprocter
modified history for redundancy removal.
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2005-05-30
jprocter
fixed stacktrace potential for pairwise alignment action.
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2005-05-30
jprocter
Modified output on stdout for similarity matrix.
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2005-05-27
jprocter
fixed brain interruption bug.
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2005-05-27
jprocter
right ordering for RedundancyPanel constructor
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2005-05-27
jprocter
added proper state check for failedJob flag.
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2005-05-27
jprocter
Added jobFail state
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2005-05-27
jprocter
better recognition of MSF files.
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2005-05-27
jprocter
Added nicer header formatting for MSFfile output.
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2005-05-27
jprocter
recovered changes from v 1.84
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2005-05-27
jprocter
Jpredfile now uses the PileUpfile io class.
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2005-05-27
jprocter
Addred GapChar string for convenient regex construction
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2005-05-27
jprocter
Response to bug mantis?id=8187 - some quick hacks to...
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2005-05-27
jprocter
Old MSF Format writer now renamed.
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2005-05-26
jprocter
fixed use of PID rather than 'Comparison' Alignment...
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2005-05-26
jprocter
fairly pointless catch exception error information...
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2005-05-26
jprocter
fixed redundancy Undo and allowed it to work on UNALIGNED...
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