*
* This file was auto-generated from WSDL
* by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
- */\r
-\r
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/\r
-package ext.vamsas;\r
-\r
-public class JpredSoapBindingStub extends org.apache.axis.client.Stub\r
- implements ext.vamsas.JPredWS {\r
- static org.apache.axis.description.OperationDesc[] _operations;\r
-\r
- static {\r
- _operations = new org.apache.axis.description.OperationDesc[4];\r
- _initOperationDesc1();\r
- }\r
-\r
- private java.util.Vector cachedSerClasses = new java.util.Vector();\r
- private java.util.Vector cachedSerQNames = new java.util.Vector();\r
- private java.util.Vector cachedSerFactories = new java.util.Vector();\r
- private java.util.Vector cachedDeserFactories = new java.util.Vector();\r
-\r
- public JpredSoapBindingStub() throws org.apache.axis.AxisFault {\r
- this(null);\r
- }\r
-\r
- public JpredSoapBindingStub(java.net.URL endpointURL,\r
- javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {\r
- this(service);\r
- super.cachedEndpoint = endpointURL;\r
- }\r
-\r
- public JpredSoapBindingStub(javax.xml.rpc.Service service)\r
- throws org.apache.axis.AxisFault {\r
- if (service == null) {\r
- super.service = new org.apache.axis.client.Service();\r
- } else {\r
- super.service = service;\r
- }\r
-\r
- java.lang.Class cls;\r
- javax.xml.namespace.QName qName;\r
- java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;\r
- java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;\r
- java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;\r
- java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;\r
- java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;\r
- java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;\r
- java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;\r
- java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;\r
- java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;\r
- java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;\r
- qName = new javax.xml.namespace.QName("http://dataTypes.vamsas",\r
- "Sequence");\r
- cachedSerQNames.add(qName);\r
- cls = ext.vamsas.Sequence.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("http://dataTypes.vamsas",\r
- "Secstructpred");\r
- cachedSerQNames.add(qName);\r
- cls = ext.vamsas.Secstructpred.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("http://dataTypes.vamsas",\r
- "Msfalignment");\r
- cachedSerQNames.add(qName);\r
- cls = ext.vamsas.Msfalignment.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("http://dataTypes.vamsas",\r
- "JpredResult");\r
- cachedSerQNames.add(qName);\r
- cls = ext.vamsas.JpredResult.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("http://dataTypes.vamsas",\r
- "Result");\r
- cachedSerQNames.add(qName);\r
- cls = ext.vamsas.Result.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
- }\r
-\r
- private static void _initOperationDesc1() {\r
- org.apache.axis.description.OperationDesc oper;\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("predict");\r
- oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"),\r
- new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence"),\r
- ext.vamsas.Sequence.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "string"));\r
- oper.setReturnClass(java.lang.String.class);\r
- oper.setReturnQName(new javax.xml.namespace.QName("vamsas",\r
- "predictReturn"));\r
- oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
- oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
- _operations[0] = oper;\r
-\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("predictOnMsa");\r
- oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"),\r
- new javax.xml.namespace.QName("http://dataTypes.vamsas",\r
- "Msfalignment"), ext.vamsas.Msfalignment.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "string"));\r
- oper.setReturnClass(java.lang.String.class);\r
- oper.setReturnQName(new javax.xml.namespace.QName("vamsas",\r
- "predictOnMsaReturn"));\r
- oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
- oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
- _operations[1] = oper;\r
-\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("getpredict");\r
- oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"),\r
- new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema",\r
- "string"), java.lang.String.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "http://dataTypes.vamsas", "Secstructpred"));\r
- oper.setReturnClass(ext.vamsas.Secstructpred.class);\r
- oper.setReturnQName(new javax.xml.namespace.QName("vamsas",\r
- "getpredictReturn"));\r
- oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
- oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
- _operations[2] = oper;\r
-\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("getresult");\r
- oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"),\r
- new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema",\r
- "string"), java.lang.String.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "http://dataTypes.vamsas", "JpredResult"));\r
- oper.setReturnClass(ext.vamsas.JpredResult.class);\r
- oper.setReturnQName(new javax.xml.namespace.QName("vamsas",\r
- "getresultReturn"));\r
- oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
- oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
- _operations[3] = oper;\r
- }\r
-\r
- protected org.apache.axis.client.Call createCall()\r
- throws java.rmi.RemoteException {\r
- try {\r
- org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service.createCall();\r
-\r
- if (super.maintainSessionSet) {\r
- _call.setMaintainSession(super.maintainSession);\r
- }\r
-\r
- if (super.cachedUsername != null) {\r
- _call.setUsername(super.cachedUsername);\r
- }\r
-\r
- if (super.cachedPassword != null) {\r
- _call.setPassword(super.cachedPassword);\r
- }\r
-\r
- if (super.cachedEndpoint != null) {\r
- _call.setTargetEndpointAddress(super.cachedEndpoint);\r
- }\r
-\r
- if (super.cachedTimeout != null) {\r
- _call.setTimeout(super.cachedTimeout);\r
- }\r
-\r
- if (super.cachedPortName != null) {\r
- _call.setPortName(super.cachedPortName);\r
- }\r
-\r
- java.util.Enumeration keys = super.cachedProperties.keys();\r
-\r
- while (keys.hasMoreElements()) {\r
- java.lang.String key = (java.lang.String) keys.nextElement();\r
- _call.setProperty(key, super.cachedProperties.get(key));\r
- }\r
-\r
- // All the type mapping information is registered\r
- // when the first call is made.\r
- // The type mapping information is actually registered in\r
- // the TypeMappingRegistry of the service, which\r
- // is the reason why registration is only needed for the first call.\r
- synchronized (this) {\r
- if (firstCall()) {\r
- // must set encoding style before registering serializers\r
- _call.setEncodingStyle(null);\r
-\r
- for (int i = 0; i < cachedSerFactories.size(); ++i) {\r
- java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);\r
- javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames.get(i);\r
- java.lang.Class sf = (java.lang.Class) cachedSerFactories.get(i);\r
- java.lang.Class df = (java.lang.Class) cachedDeserFactories.get(i);\r
- _call.registerTypeMapping(cls, qName, sf, df, false);\r
- }\r
- }\r
- }\r
-\r
- return _call;\r
- } catch (java.lang.Throwable _t) {\r
- throw new org.apache.axis.AxisFault("Failure trying to get the Call object",\r
- _t);\r
- }\r
- }\r
-\r
- public java.lang.String predict(ext.vamsas.Sequence in0)\r
- throws java.rmi.RemoteException {\r
- if (super.cachedEndpoint == null) {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
-\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[0]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("");\r
- _call.setEncodingStyle(null);\r
- _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
- Boolean.FALSE);\r
- _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
- Boolean.FALSE);\r
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predict"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
-\r
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] { in0 });\r
-\r
- if (_resp instanceof java.rmi.RemoteException) {\r
- throw (java.rmi.RemoteException) _resp;\r
- } else {\r
- extractAttachments(_call);\r
-\r
- try {\r
- return (java.lang.String) _resp;\r
- } catch (java.lang.Exception _exception) {\r
- return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp,\r
- java.lang.String.class);\r
- }\r
- }\r
- }\r
-\r
- public java.lang.String predictOnMsa(ext.vamsas.Msfalignment in0)\r
- throws java.rmi.RemoteException {\r
- if (super.cachedEndpoint == null) {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
-\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[1]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("");\r
- _call.setEncodingStyle(null);\r
- _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
- Boolean.FALSE);\r
- _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
- Boolean.FALSE);\r
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName("vamsas",\r
- "predictOnMsa"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
-\r
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] { in0 });\r
-\r
- if (_resp instanceof java.rmi.RemoteException) {\r
- throw (java.rmi.RemoteException) _resp;\r
- } else {\r
- extractAttachments(_call);\r
-\r
- try {\r
- return (java.lang.String) _resp;\r
- } catch (java.lang.Exception _exception) {\r
- return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp,\r
- java.lang.String.class);\r
- }\r
- }\r
- }\r
-\r
- public ext.vamsas.Secstructpred getpredict(java.lang.String in0)\r
- throws java.rmi.RemoteException {\r
- if (super.cachedEndpoint == null) {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
-\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[2]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("");\r
- _call.setEncodingStyle(null);\r
- _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
- Boolean.FALSE);\r
- _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
- Boolean.FALSE);\r
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName("vamsas",\r
- "getpredict"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
-\r
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] { in0 });\r
-\r
- if (_resp instanceof java.rmi.RemoteException) {\r
- throw (java.rmi.RemoteException) _resp;\r
- } else {\r
- extractAttachments(_call);\r
-\r
- try {\r
- return (ext.vamsas.Secstructpred) _resp;\r
- } catch (java.lang.Exception _exception) {\r
- return (ext.vamsas.Secstructpred) org.apache.axis.utils.JavaUtils.convert(_resp,\r
- ext.vamsas.Secstructpred.class);\r
- }\r
- }\r
- }\r
-\r
- public ext.vamsas.JpredResult getresult(java.lang.String in0)\r
- throws java.rmi.RemoteException {\r
- if (super.cachedEndpoint == null) {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
-\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[3]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("");\r
- _call.setEncodingStyle(null);\r
- _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
- Boolean.FALSE);\r
- _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
- Boolean.FALSE);\r
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName("vamsas",\r
- "getresult"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
-\r
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] { in0 });\r
-\r
- if (_resp instanceof java.rmi.RemoteException) {\r
- throw (java.rmi.RemoteException) _resp;\r
- } else {\r
- extractAttachments(_call);\r
-\r
- try {\r
- return (ext.vamsas.JpredResult) _resp;\r
- } catch (java.lang.Exception _exception) {\r
- return (ext.vamsas.JpredResult) org.apache.axis.utils.JavaUtils.convert(_resp,\r
- ext.vamsas.JpredResult.class);\r
- }\r
- }\r
- }\r
-}\r
+ */
+
+package ext.vamsas;
+
+public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements ext.vamsas.Jpred {
+ private java.util.Vector cachedSerClasses = new java.util.Vector();
+ private java.util.Vector cachedSerQNames = new java.util.Vector();
+ private java.util.Vector cachedSerFactories = new java.util.Vector();
+ private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+ static org.apache.axis.description.OperationDesc [] _operations;
+
+ static {
+ _operations = new org.apache.axis.description.OperationDesc[4];
+ _initOperationDesc1();
+ }
+
+ private static void _initOperationDesc1(){
+ org.apache.axis.description.OperationDesc oper;
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("predict");
+ oper.addParameter(new javax.xml.namespace.QName("", "seq"), new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"), vamsas.objects.simple.Sequence.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ oper.setReturnClass(java.lang.String.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "predictReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[0] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("predictOnMsa");
+ oper.addParameter(new javax.xml.namespace.QName("", "msf"), new javax.xml.namespace.QName("http://simple.objects.vamsas", "Msfalignment"), vamsas.objects.simple.Msfalignment.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ oper.setReturnClass(java.lang.String.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "predictOnMsaReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[1] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getpredict");
+ oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName("http://simple.objects.vamsas", "Secstructpred"));
+ oper.setReturnClass(vamsas.objects.simple.Secstructpred.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "getpredictReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[2] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getresult");
+ oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName("http://simple.objects.vamsas", "JpredResult"));
+ oper.setReturnClass(vamsas.objects.simple.JpredResult.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "getresultReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[3] = oper;
+
+ }
+
+ public JpredSoapBindingStub() throws org.apache.axis.AxisFault {
+ this(null);
+ }
+
+ public JpredSoapBindingStub(java.net.URL endpointURL, javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
+ this(service);
+ super.cachedEndpoint = endpointURL;
+ }
+
+ public JpredSoapBindingStub(javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
+ if (service == null) {
+ super.service = new org.apache.axis.client.Service();
+ } else {
+ super.service = service;
+ }
+ java.lang.Class cls;
+ javax.xml.namespace.QName qName;
+ java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+ java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+ java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+ java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+ java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+ java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+ java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+ java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+ java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+ java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+ qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "JpredResult");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.JpredResult.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Result.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "Secstructpred");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Secstructpred.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "Msfalignment");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Msfalignment.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Sequence.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ }
+
+ protected org.apache.axis.client.Call createCall() throws java.rmi.RemoteException {
+ try {
+ org.apache.axis.client.Call _call =
+ (org.apache.axis.client.Call) super.service.createCall();
+ if (super.maintainSessionSet) {
+ _call.setMaintainSession(super.maintainSession);
+ }
+ if (super.cachedUsername != null) {
+ _call.setUsername(super.cachedUsername);
+ }
+ if (super.cachedPassword != null) {
+ _call.setPassword(super.cachedPassword);
+ }
+ if (super.cachedEndpoint != null) {
+ _call.setTargetEndpointAddress(super.cachedEndpoint);
+ }
+ if (super.cachedTimeout != null) {
+ _call.setTimeout(super.cachedTimeout);
+ }
+ if (super.cachedPortName != null) {
+ _call.setPortName(super.cachedPortName);
+ }
+ java.util.Enumeration keys = super.cachedProperties.keys();
+ while (keys.hasMoreElements()) {
+ java.lang.String key = (java.lang.String) keys.nextElement();
+ _call.setProperty(key, super.cachedProperties.get(key));
+ }
+ // All the type mapping information is registered
+ // when the first call is made.
+ // The type mapping information is actually registered in
+ // the TypeMappingRegistry of the service, which
+ // is the reason why registration is only needed for the first call.
+ synchronized (this) {
+ if (firstCall()) {
+ // must set encoding style before registering serializers
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
+ for (int i = 0; i < cachedSerFactories.size(); ++i) {
+ java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+ javax.xml.namespace.QName qName =
+ (javax.xml.namespace.QName) cachedSerQNames.get(i);
+ java.lang.Class sf = (java.lang.Class)
+ cachedSerFactories.get(i);
+ java.lang.Class df = (java.lang.Class)
+ cachedDeserFactories.get(i);
+ _call.registerTypeMapping(cls, qName, sf, df, false);
+ }
+ }
+ }
+ return _call;
+ }
+ catch (java.lang.Throwable _t) {
+ throw new org.apache.axis.AxisFault("Failure trying to get the Call object", _t);
+ }
+ }
+
+ public java.lang.String predict(vamsas.objects.simple.Sequence seq) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[0]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predict"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {seq});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ extractAttachments(_call);
+ try {
+ return (java.lang.String) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);
+ }
+ }
+ }
+
+ public java.lang.String predictOnMsa(vamsas.objects.simple.Msfalignment msf) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[1]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predictOnMsa"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {msf});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ extractAttachments(_call);
+ try {
+ return (java.lang.String) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.Secstructpred getpredict(java.lang.String job_id) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[2]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getpredict"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ extractAttachments(_call);
+ try {
+ return (vamsas.objects.simple.Secstructpred) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.Secstructpred.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.JpredResult getresult(java.lang.String job_id) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[3]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getresult"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ extractAttachments(_call);
+ try {
+ return (vamsas.objects.simple.JpredResult) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.JpredResult.class);
+ }
+ }
+ }
+
+}
public class JPredClient\r
extends WSClient\r
{\r
- ext.vamsas.JPredWS server;\r
+ ext.vamsas.Jpred server;\r
String altitle = "";\r
java.util.Hashtable SequenceInfo = null;\r
public JPredClient(ext.vamsas.ServiceHandle sh, String title, SequenceI seq) {\r
\r
private boolean locateWebService()\r
{\r
- JPredWSServiceLocator loc = new JPredWSServiceLocator(); // Default\r
+ ext.vamsas.JpredServiceLocator loc = new JpredServiceLocator(); // Default\r
\r
try\r
{\r
extends Thread\r
{\r
String OutputHeader;\r
- ext.vamsas.JpredResult result;\r
- ext.vamsas.Sequence sequence;\r
- ext.vamsas.Msfalignment msa;\r
+ vamsas.objects.simple.JpredResult result;\r
+ vamsas.objects.simple.Sequence sequence;\r
+ vamsas.objects.simple.Msfalignment msa;\r
String jobId;\r
boolean jobComplete = false;\r
int allowedServerExceptions = 3; // thread dies if too many exceptions.\r
JPredThread(SequenceI seq)\r
{\r
OutputHeader = wsInfo.getProgressText();\r
- this.sequence = new ext.vamsas.Sequence();\r
+ this.sequence = new vamsas.objects.simple.Sequence();\r
this.sequence.setId(seq.getName());\r
this.sequence.setSeq(AlignSeq.extractGaps("-. ", seq.getSequence()));\r
}\r
JPredThread(SequenceI[] msf)\r
{\r
OutputHeader = wsInfo.getProgressText();\r
- this.sequence = new ext.vamsas.Sequence();\r
+ this.sequence = new vamsas.objects.simple.Sequence();\r
this.sequence.setId(msf[0].getName());\r
this.sequence.setSeq(AlignSeq.extractGaps("-. ",\r
msf[0].getSequence()));\r
\r
jalview.io.PileUpfile mwrite = new jalview.io.PileUpfile();\r
- this.msa = new ext.vamsas.Msfalignment();\r
+ this.msa = new vamsas.objects.simple.Msfalignment();\r
msa.setMsf(mwrite.print(msf));\r
}\r
\r
throw (new Exception(\r
"Timed out when communicating with server\nTry again later.\n"));\r
}\r
-\r
+ if (result.getState()==0)\r
+ jalview.bin.Jalview.log.debug("Finished "+jobId);\r
if (result.isRunning())\r
{\r
wsInfo.setStatus(WebserviceInfo.STATE_RUNNING);\r
}\r
- else if (result.isQueued())\r
+ if (result.isQueued())\r
{\r
wsInfo.setStatus(WebserviceInfo.STATE_QUEUING);\r
}\r
\r
+ wsInfo.setProgressText(OutputHeader + "\n" +\r
+ result.getStatus());\r
+\r
if (result.isFinished())\r
{\r
+\r
parseResult();\r
jobComplete = true;\r
jobsRunning--;\r
- }\r
- else\r
- {\r
- wsInfo.setProgressText(OutputHeader + "\n" +\r
- result.getStatus());\r
-\r
+ } else {\r
+ // catch exceptions\r
if (! (result.isJobFailed() || result.isServerError()))\r
{\r
try\r
else\r
{\r
wsInfo.setStatus(WebserviceInfo.STATE_STOPPED_ERROR);\r
+ jobsRunning--;\r
+ jobComplete = true;\r
}\r
}\r
}\r
"JPredWS Client: Failed to submit the prediction (Probably a server error - see below)\n" +\r
e.toString() + "\n");\r
\r
- // e.printStackTrace(); TODO: JBPNote DEBUG\r
+ jalview.bin.Jalview.log.debug("Failed Submission",e);\r
}\r
}\r
\r
}\r
catch (Exception ex)\r
{\r
- ex.printStackTrace();\r
+ jalview.bin.Jalview.log.warn("Exception whilst parsing JNet style secondary structure prediction.");\r
+ jalview.bin.Jalview.log.debug(ex);\r
}\r
}\r
}\r
*
* This file was auto-generated from WSDL
* by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
- */\r
-\r
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/\r
-package vamsas.objects.simple;\r
-\r
-public class Result implements java.io.Serializable {\r
- private boolean broken;\r
- private boolean failed;\r
- private boolean finished;\r
- private boolean invalid;\r
- private boolean jobFailed;\r
- private boolean queued;\r
- private boolean running;\r
- private boolean serverError;\r
- private int state;\r
- private java.lang.String status;\r
- private boolean suspended;\r
- private java.lang.Object __equalsCalc = null;\r
- private boolean __hashCodeCalc = false;\r
-\r
- public Result() {\r
- }\r
-\r
- public Result(boolean broken, boolean failed, boolean finished,\r
- boolean invalid, boolean jobFailed, boolean queued, boolean running,\r
- boolean serverError, int state, java.lang.String status,\r
- boolean suspended) {\r
- this.broken = broken;\r
- this.failed = failed;\r
- this.finished = finished;\r
- this.invalid = invalid;\r
- this.jobFailed = jobFailed;\r
- this.queued = queued;\r
- this.running = running;\r
- this.serverError = serverError;\r
- this.state = state;\r
- this.status = status;\r
- this.suspended = suspended;\r
- }\r
-\r
+ */
+
+package vamsas.objects.simple;
+
+public class Result implements java.io.Serializable {
+ private boolean broken;
+ private boolean failed;
+ private boolean finished;
+ private boolean invalid;
+ private boolean jobFailed;
+ private boolean queued;
+ private boolean running;
+ private boolean serverError;
+ private int state;
+ private java.lang.String status;
+ private boolean suspended;
+
+ public Result() {
+ }
+
+ public Result(
+ boolean broken,
+ boolean failed,
+ boolean finished,
+ boolean invalid,
+ boolean jobFailed,
+ boolean queued,
+ boolean running,
+ boolean serverError,
+ int state,
+ java.lang.String status,
+ boolean suspended) {
+ this.broken = broken;
+ this.failed = failed;
+ this.finished = finished;
+ this.invalid = invalid;
+ this.jobFailed = jobFailed;
+ this.queued = queued;
+ this.running = running;
+ this.serverError = serverError;
+ this.state = state;
+ this.status = status;
+ this.suspended = suspended;
+ }
+
+
/**
- * Gets the broken value for this Result.
- *
- * @return broken
- */\r
- public boolean isBroken() {\r
- return broken;\r
- }\r
-\r
+ * Gets the broken value for this Result.
+ *
+ * @return broken
+ */
+ public boolean isBroken() {
+ return broken;
+ }
+
+
/**
- * Sets the broken value for this Result.
- *
- * @param broken
- */\r
- public void setBroken(boolean broken) {\r
- this.broken = broken;\r
- }\r
-\r
+ * Sets the broken value for this Result.
+ *
+ * @param broken
+ */
+ public void setBroken(boolean broken) {
+ this.broken = broken;
+ }
+
+
/**
- * Gets the failed value for this Result.
- *
- * @return failed
- */\r
- public boolean isFailed() {\r
- return failed;\r
- }\r
-\r
+ * Gets the failed value for this Result.
+ *
+ * @return failed
+ */
+ public boolean isFailed() {
+ return failed;
+ }
+
+
/**
- * Sets the failed value for this Result.
- *
- * @param failed
- */\r
- public void setFailed(boolean failed) {\r
- this.failed = failed;\r
- }\r
-\r
+ * Sets the failed value for this Result.
+ *
+ * @param failed
+ */
+ public void setFailed(boolean failed) {
+ this.failed = failed;
+ }
+
+
/**
- * Gets the finished value for this Result.
- *
- * @return finished
- */\r
- public boolean isFinished() {\r
- return finished;\r
- }\r
-\r
+ * Gets the finished value for this Result.
+ *
+ * @return finished
+ */
+ public boolean isFinished() {
+ return finished;
+ }
+
+
/**
- * Sets the finished value for this Result.
- *
- * @param finished
- */\r
- public void setFinished(boolean finished) {\r
- this.finished = finished;\r
- }\r
-\r
+ * Sets the finished value for this Result.
+ *
+ * @param finished
+ */
+ public void setFinished(boolean finished) {
+ this.finished = finished;
+ }
+
+
/**
- * Gets the invalid value for this Result.
- *
- * @return invalid
- */\r
- public boolean isInvalid() {\r
- return invalid;\r
- }\r
-\r
+ * Gets the invalid value for this Result.
+ *
+ * @return invalid
+ */
+ public boolean isInvalid() {
+ return invalid;
+ }
+
+
/**
- * Sets the invalid value for this Result.
- *
- * @param invalid
- */\r
- public void setInvalid(boolean invalid) {\r
- this.invalid = invalid;\r
- }\r
-\r
+ * Sets the invalid value for this Result.
+ *
+ * @param invalid
+ */
+ public void setInvalid(boolean invalid) {
+ this.invalid = invalid;
+ }
+
+
/**
- * Gets the jobFailed value for this Result.
- *
- * @return jobFailed
- */\r
- public boolean isJobFailed() {\r
- return jobFailed;\r
- }\r
-\r
+ * Gets the jobFailed value for this Result.
+ *
+ * @return jobFailed
+ */
+ public boolean isJobFailed() {
+ return jobFailed;
+ }
+
+
/**
- * Sets the jobFailed value for this Result.
- *
- * @param jobFailed
- */\r
- public void setJobFailed(boolean jobFailed) {\r
- this.jobFailed = jobFailed;\r
- }\r
-\r
+ * Sets the jobFailed value for this Result.
+ *
+ * @param jobFailed
+ */
+ public void setJobFailed(boolean jobFailed) {
+ this.jobFailed = jobFailed;
+ }
+
+
/**
- * Gets the queued value for this Result.
- *
- * @return queued
- */\r
- public boolean isQueued() {\r
- return queued;\r
- }\r
-\r
+ * Gets the queued value for this Result.
+ *
+ * @return queued
+ */
+ public boolean isQueued() {
+ return queued;
+ }
+
+
/**
- * Sets the queued value for this Result.
- *
- * @param queued
- */\r
- public void setQueued(boolean queued) {\r
- this.queued = queued;\r
- }\r
-\r
+ * Sets the queued value for this Result.
+ *
+ * @param queued
+ */
+ public void setQueued(boolean queued) {
+ this.queued = queued;
+ }
+
+
/**
- * Gets the running value for this Result.
- *
- * @return running
- */\r
- public boolean isRunning() {\r
- return running;\r
- }\r
-\r
+ * Gets the running value for this Result.
+ *
+ * @return running
+ */
+ public boolean isRunning() {
+ return running;
+ }
+
+
/**
- * Sets the running value for this Result.
- *
- * @param running
- */\r
- public void setRunning(boolean running) {\r
- this.running = running;\r
- }\r
-\r
+ * Sets the running value for this Result.
+ *
+ * @param running
+ */
+ public void setRunning(boolean running) {
+ this.running = running;
+ }
+
+
/**
- * Gets the serverError value for this Result.
- *
- * @return serverError
- */\r
- public boolean isServerError() {\r
- return serverError;\r
- }\r
-\r
+ * Gets the serverError value for this Result.
+ *
+ * @return serverError
+ */
+ public boolean isServerError() {
+ return serverError;
+ }
+
+
/**
- * Sets the serverError value for this Result.
- *
- * @param serverError
- */\r
- public void setServerError(boolean serverError) {\r
- this.serverError = serverError;\r
- }\r
-\r
+ * Sets the serverError value for this Result.
+ *
+ * @param serverError
+ */
+ public void setServerError(boolean serverError) {
+ this.serverError = serverError;
+ }
+
+
/**
- * Gets the state value for this Result.
- *
- * @return state
- */\r
- public int getState() {\r
- return state;\r
- }\r
-\r
+ * Gets the state value for this Result.
+ *
+ * @return state
+ */
+ public int getState() {
+ return state;
+ }
+
+
/**
- * Sets the state value for this Result.
- *
- * @param state
- */\r
- public void setState(int state) {\r
- this.state = state;\r
- }\r
-\r
+ * Sets the state value for this Result.
+ *
+ * @param state
+ */
+ public void setState(int state) {
+ this.state = state;
+ }
+
+
/**
- * Gets the status value for this Result.
- *
- * @return status
- */\r
- public java.lang.String getStatus() {\r
- return status;\r
- }\r
-\r
+ * Gets the status value for this Result.
+ *
+ * @return status
+ */
+ public java.lang.String getStatus() {
+ return status;
+ }
+
+
/**
- * Sets the status value for this Result.
- *
- * @param status
- */\r
- public void setStatus(java.lang.String status) {\r
- this.status = status;\r
- }\r
-\r
+ * Sets the status value for this Result.
+ *
+ * @param status
+ */
+ public void setStatus(java.lang.String status) {
+ this.status = status;
+ }
+
+
/**
- * Gets the suspended value for this Result.
- *
- * @return suspended
- */\r
- public boolean isSuspended() {\r
- return suspended;\r
- }\r
-\r
+ * Gets the suspended value for this Result.
+ *
+ * @return suspended
+ */
+ public boolean isSuspended() {
+ return suspended;
+ }
+
+
/**
- * Sets the suspended value for this Result.
- *
- * @param suspended
- */\r
- public void setSuspended(boolean suspended) {\r
- this.suspended = suspended;\r
- }\r
-\r
- public synchronized boolean equals(java.lang.Object obj) {\r
- if (!(obj instanceof Result)) {\r
- return false;\r
- }\r
-\r
- Result other = (Result) obj;\r
-\r
- if (obj == null) {\r
- return false;\r
- }\r
-\r
- if (this == obj) {\r
- return true;\r
- }\r
-\r
- if (__equalsCalc != null) {\r
- return (__equalsCalc == obj);\r
- }\r
-\r
- __equalsCalc = obj;\r
-\r
- boolean _equals;\r
- _equals = true && (this.broken == other.isBroken()) &&\r
- (this.failed == other.isFailed()) &&\r
- (this.finished == other.isFinished()) &&\r
- (this.invalid == other.isInvalid()) &&\r
- (this.jobFailed == other.isJobFailed()) &&\r
- (this.queued == other.isQueued()) &&\r
- (this.running == other.isRunning()) &&\r
- (this.serverError == other.isServerError()) &&\r
- (this.state == other.getState()) &&\r
- (((this.status == null) && (other.getStatus() == null)) ||\r
- ((this.status != null) && this.status.equals(other.getStatus()))) &&\r
- (this.suspended == other.isSuspended());\r
- __equalsCalc = null;\r
-\r
- return _equals;\r
- }\r
-\r
- public synchronized int hashCode() {\r
- if (__hashCodeCalc) {\r
- return 0;\r
- }\r
-\r
- __hashCodeCalc = true;\r
-\r
- int _hashCode = 1;\r
- _hashCode += (isBroken() ? Boolean.TRUE : Boolean.FALSE).hashCode();\r
- _hashCode += (isFailed() ? Boolean.TRUE : Boolean.FALSE).hashCode();\r
- _hashCode += (isFinished() ? Boolean.TRUE : Boolean.FALSE).hashCode();\r
- _hashCode += (isInvalid() ? Boolean.TRUE : Boolean.FALSE).hashCode();\r
- _hashCode += (isJobFailed() ? Boolean.TRUE : Boolean.FALSE).hashCode();\r
- _hashCode += (isQueued() ? Boolean.TRUE : Boolean.FALSE).hashCode();\r
- _hashCode += (isRunning() ? Boolean.TRUE : Boolean.FALSE).hashCode();\r
- _hashCode += (isServerError() ? Boolean.TRUE : Boolean.FALSE).hashCode();\r
- _hashCode += getState();\r
-\r
- if (getStatus() != null) {\r
- _hashCode += getStatus().hashCode();\r
- }\r
-\r
- _hashCode += (isSuspended() ? Boolean.TRUE : Boolean.FALSE).hashCode();\r
- __hashCodeCalc = false;\r
-\r
- return _hashCode;\r
- }\r
-}\r
+ * Sets the suspended value for this Result.
+ *
+ * @param suspended
+ */
+ public void setSuspended(boolean suspended) {
+ this.suspended = suspended;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+ public synchronized boolean equals(java.lang.Object obj) {
+ if (!(obj instanceof Result)) return false;
+ Result other = (Result) obj;
+ if (obj == null) return false;
+ if (this == obj) return true;
+ if (__equalsCalc != null) {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = true &&
+ this.broken == other.isBroken() &&
+ this.failed == other.isFailed() &&
+ this.finished == other.isFinished() &&
+ this.invalid == other.isInvalid() &&
+ this.jobFailed == other.isJobFailed() &&
+ this.queued == other.isQueued() &&
+ this.running == other.isRunning() &&
+ this.serverError == other.isServerError() &&
+ this.state == other.getState() &&
+ ((this.status==null && other.getStatus()==null) ||
+ (this.status!=null &&
+ this.status.equals(other.getStatus()))) &&
+ this.suspended == other.isSuspended();
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+ public synchronized int hashCode() {
+ if (__hashCodeCalc) {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = 1;
+ _hashCode += (isBroken() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isFailed() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isFinished() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isInvalid() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isJobFailed() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isQueued() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isRunning() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isServerError() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += getState();
+ if (getStatus() != null) {
+ _hashCode += getStatus().hashCode();
+ }
+ _hashCode += (isSuspended() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+}
*
* This file was auto-generated from WSDL
* by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
- */\r
-\r
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/\r
-package vamsas.objects.simple;\r
-\r
-public class Result_Helper {\r
- // Type metadata\r
- private static org.apache.axis.description.TypeDesc typeDesc = new org.apache.axis.description.TypeDesc(Result.class,\r
- true);\r
-\r
- static {\r
- typeDesc.setXmlType(new javax.xml.namespace.QName(\r
- "simple.objects.vamsas", "Result"));\r
-\r
- org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("broken");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "broken"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("failed");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "failed"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("finished");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "finished"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("invalid");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "invalid"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("jobFailed");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "jobFailed"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("queued");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "queued"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("running");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "running"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("serverError");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "serverError"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("state");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "state"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "int"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("status");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "status"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://schemas.xmlsoap.org/soap/encoding/", "string"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("suspended");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "suspended"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"));\r
- typeDesc.addFieldDesc(elemField);\r
- }\r
-\r
+ */
+
+package vamsas.objects.simple;
+
+public class Result_Helper {
+ // Type metadata
+ private static org.apache.axis.description.TypeDesc typeDesc =
+ new org.apache.axis.description.TypeDesc(Result.class, true);
+
+ static {
+ typeDesc.setXmlType(new javax.xml.namespace.QName("simple.objects.vamsas", "Result"));
+ org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("broken");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "broken"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("failed");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "failed"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("finished");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "finished"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("invalid");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "invalid"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("jobFailed");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "jobFailed"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("queued");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "queued"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("running");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "running"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("serverError");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "serverError"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("state");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "state"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "int"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("status");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "status"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://schemas.xmlsoap.org/soap/encoding/", "string"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("suspended");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "suspended"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ }
+
/**
- * Return type metadata object
- */\r
- public static org.apache.axis.description.TypeDesc getTypeDesc() {\r
- return typeDesc;\r
- }\r
-\r
+ * Return type metadata object
+ */
+ public static org.apache.axis.description.TypeDesc getTypeDesc() {
+ return typeDesc;
+ }
+
/**
- * Get Custom Serializer
- */\r
- public static org.apache.axis.encoding.Serializer getSerializer(\r
- java.lang.String mechType, java.lang.Class _javaType,\r
- javax.xml.namespace.QName _xmlType) {\r
- return new org.apache.axis.encoding.ser.BeanSerializer(_javaType,\r
- _xmlType, typeDesc);\r
- }\r
-\r
+ * Get Custom Serializer
+ */
+ public static org.apache.axis.encoding.Serializer getSerializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanSerializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
/**
- * Get Custom Deserializer
- */\r
- public static org.apache.axis.encoding.Deserializer getDeserializer(\r
- java.lang.String mechType, java.lang.Class _javaType,\r
- javax.xml.namespace.QName _xmlType) {\r
- return new org.apache.axis.encoding.ser.BeanDeserializer(_javaType,\r
- _xmlType, typeDesc);\r
- }\r
-}\r
+ * Get Custom Deserializer
+ */
+ public static org.apache.axis.encoding.Deserializer getDeserializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanDeserializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+}
*
* This file was auto-generated from WSDL
* by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
- */\r
-\r
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/\r
-package vamsas.objects.simple;\r
-\r
-public class Sequence implements java.io.Serializable {\r
- private java.lang.String id;\r
- private java.lang.String seq;\r
- private java.lang.Object __equalsCalc = null;\r
- private boolean __hashCodeCalc = false;\r
-\r
- public Sequence() {\r
- }\r
-\r
- public Sequence(java.lang.String id, java.lang.String seq) {\r
- this.id = id;\r
- this.seq = seq;\r
- }\r
-\r
+ */
+
+package vamsas.objects.simple;
+
+public class Sequence implements java.io.Serializable {
+ private java.lang.String id;
+ private java.lang.String seq;
+
+ public Sequence() {
+ }
+
+ public Sequence(
+ java.lang.String id,
+ java.lang.String seq) {
+ this.id = id;
+ this.seq = seq;
+ }
+
+
/**
- * Gets the id value for this Sequence.
- *
- * @return id
- */\r
- public java.lang.String getId() {\r
- return id;\r
- }\r
-\r
+ * Gets the id value for this Sequence.
+ *
+ * @return id
+ */
+ public java.lang.String getId() {
+ return id;
+ }
+
+
/**
- * Sets the id value for this Sequence.
- *
- * @param id
- */\r
- public void setId(java.lang.String id) {\r
- this.id = id;\r
- }\r
-\r
+ * Sets the id value for this Sequence.
+ *
+ * @param id
+ */
+ public void setId(java.lang.String id) {
+ this.id = id;
+ }
+
+
/**
- * Gets the seq value for this Sequence.
- *
- * @return seq
- */\r
- public java.lang.String getSeq() {\r
- return seq;\r
- }\r
-\r
+ * Gets the seq value for this Sequence.
+ *
+ * @return seq
+ */
+ public java.lang.String getSeq() {
+ return seq;
+ }
+
+
/**
- * Sets the seq value for this Sequence.
- *
- * @param seq
- */\r
- public void setSeq(java.lang.String seq) {\r
- this.seq = seq;\r
- }\r
-\r
- public synchronized boolean equals(java.lang.Object obj) {\r
- if (!(obj instanceof Sequence)) {\r
- return false;\r
- }\r
-\r
- Sequence other = (Sequence) obj;\r
-\r
- if (obj == null) {\r
- return false;\r
- }\r
-\r
- if (this == obj) {\r
- return true;\r
- }\r
-\r
- if (__equalsCalc != null) {\r
- return (__equalsCalc == obj);\r
- }\r
-\r
- __equalsCalc = obj;\r
-\r
- boolean _equals;\r
- _equals = true &&\r
- (((this.id == null) && (other.getId() == null)) ||\r
- ((this.id != null) && this.id.equals(other.getId()))) &&\r
- (((this.seq == null) && (other.getSeq() == null)) ||\r
- ((this.seq != null) && this.seq.equals(other.getSeq())));\r
- __equalsCalc = null;\r
-\r
- return _equals;\r
- }\r
-\r
- public synchronized int hashCode() {\r
- if (__hashCodeCalc) {\r
- return 0;\r
- }\r
-\r
- __hashCodeCalc = true;\r
-\r
- int _hashCode = 1;\r
-\r
- if (getId() != null) {\r
- _hashCode += getId().hashCode();\r
- }\r
-\r
- if (getSeq() != null) {\r
- _hashCode += getSeq().hashCode();\r
- }\r
-\r
- __hashCodeCalc = false;\r
-\r
- return _hashCode;\r
- }\r
-}\r
+ * Sets the seq value for this Sequence.
+ *
+ * @param seq
+ */
+ public void setSeq(java.lang.String seq) {
+ this.seq = seq;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+ public synchronized boolean equals(java.lang.Object obj) {
+ if (!(obj instanceof Sequence)) return false;
+ Sequence other = (Sequence) obj;
+ if (obj == null) return false;
+ if (this == obj) return true;
+ if (__equalsCalc != null) {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = true &&
+ ((this.id==null && other.getId()==null) ||
+ (this.id!=null &&
+ this.id.equals(other.getId()))) &&
+ ((this.seq==null && other.getSeq()==null) ||
+ (this.seq!=null &&
+ this.seq.equals(other.getSeq())));
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+ public synchronized int hashCode() {
+ if (__hashCodeCalc) {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = 1;
+ if (getId() != null) {
+ _hashCode += getId().hashCode();
+ }
+ if (getSeq() != null) {
+ _hashCode += getSeq().hashCode();
+ }
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+}
*
* This file was auto-generated from WSDL
* by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
- */\r
-\r
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/\r
-package vamsas.objects.simple;\r
-\r
-public class Sequence_Helper {\r
- // Type metadata\r
- private static org.apache.axis.description.TypeDesc typeDesc = new org.apache.axis.description.TypeDesc(Sequence.class,\r
- true);\r
-\r
- static {\r
- typeDesc.setXmlType(new javax.xml.namespace.QName(\r
- "simple.objects.vamsas", "Sequence"));\r
-\r
- org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("id");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "id"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://schemas.xmlsoap.org/soap/encoding/", "string"));\r
- typeDesc.addFieldDesc(elemField);\r
- elemField = new org.apache.axis.description.ElementDesc();\r
- elemField.setFieldName("seq");\r
- elemField.setXmlName(new javax.xml.namespace.QName("", "seq"));\r
- elemField.setXmlType(new javax.xml.namespace.QName(\r
- "http://schemas.xmlsoap.org/soap/encoding/", "string"));\r
- typeDesc.addFieldDesc(elemField);\r
- }\r
-\r
+ */
+
+package vamsas.objects.simple;
+
+public class Sequence_Helper {
+ // Type metadata
+ private static org.apache.axis.description.TypeDesc typeDesc =
+ new org.apache.axis.description.TypeDesc(Sequence.class, true);
+
+ static {
+ typeDesc.setXmlType(new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"));
+ org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("id");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "id"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://schemas.xmlsoap.org/soap/encoding/", "string"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("seq");
+ elemField.setXmlName(new javax.xml.namespace.QName("", "seq"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://schemas.xmlsoap.org/soap/encoding/", "string"));
+ typeDesc.addFieldDesc(elemField);
+ }
+
/**
- * Return type metadata object
- */\r
- public static org.apache.axis.description.TypeDesc getTypeDesc() {\r
- return typeDesc;\r
- }\r
-\r
+ * Return type metadata object
+ */
+ public static org.apache.axis.description.TypeDesc getTypeDesc() {
+ return typeDesc;
+ }
+
/**
- * Get Custom Serializer
- */\r
- public static org.apache.axis.encoding.Serializer getSerializer(\r
- java.lang.String mechType, java.lang.Class _javaType,\r
- javax.xml.namespace.QName _xmlType) {\r
- return new org.apache.axis.encoding.ser.BeanSerializer(_javaType,\r
- _xmlType, typeDesc);\r
- }\r
-\r
+ * Get Custom Serializer
+ */
+ public static org.apache.axis.encoding.Serializer getSerializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanSerializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
/**
- * Get Custom Deserializer
- */\r
- public static org.apache.axis.encoding.Deserializer getDeserializer(\r
- java.lang.String mechType, java.lang.Class _javaType,\r
- javax.xml.namespace.QName _xmlType) {\r
- return new org.apache.axis.encoding.ser.BeanDeserializer(_javaType,\r
- _xmlType, typeDesc);\r
- }\r
-}\r
+ * Get Custom Deserializer
+ */
+ public static org.apache.axis.encoding.Deserializer getDeserializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanDeserializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+}
git://source.jalview.org / jalview.git / commitdiff