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JAL-2362 return correct lower-case colour; Javadoc; unit test
2016-12-12
gmungoc
JAL-2362 return correct lower-case colour; Javadoc...
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2016-12-12
gmungoc
JAL-2632 corrected lookup of residue colour
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2016-12-09
gmungoc
JAL-2105 updated for reviewed REST version 4.8
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2016-12-09
gmungoc
JAL-1895 suppress RNA interaction colour option
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2016-12-08
gmungoc
JAL-2359 add Window menu entry only after all danger...
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2016-12-07
gmungoc
JAL-2356 use cached Sifts file if not expired
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2016-12-07
gmungoc
JAL-2354 handle error response when fetching features
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2016-12-07
gmungoc
JAL-2344 handle null format, simplify JalviewFileChooser...
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2016-11-30
gmungoc
JAL-2344 use ".cif" for saved mmCIF file (and refactor...
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2016-11-29
gmungoc
JAL-2329 tests to confirm behaviour of Java extended...
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2016-11-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-11-29
gmungoc
JAL-2344 corrected conversion of Type enum to FileFormat
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2016-11-29
gmungoc
JAL-2344 FileFormat.isStructureFile replaces
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2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-28
gmungoc
JAL-2344 added FileFormatI.isStructureFile()
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2016-11-28
gmungoc
JAL-2345 cache generated ImageIcon per file path
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2016-11-25
gmungoc
JAL-2344 dynamically determine recognised extensions...
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-25
gmungoc
JAL-2344 override to ignore (obsolete?) JalviewFileView
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2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
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2016-11-25
gmungoc
JAL-2344 correct roundtrip test to exclude Jalview...
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2016-11-24
gmungoc
Distinguish text-only output formats and others (.jar...
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2016-11-24
gmungoc
Further tweaks to get tests passing
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2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
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2016-11-23
gmungoc
JAL-1738 Spanish versions added
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2016-11-22
gmungoc
JAL-2337 fix: only adjust once for scroll offset
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2016-11-22
gmungoc
JAL-1919 JAL-2177 handle empty pdbentries list correctly
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2016-11-22
gmungoc
JAL-2277 refactored AlignmentPanel.printUnwrapped to...
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2016-11-21
gmungoc
JAL-2333 test beefed up with gaps
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2016-11-21
gmungoc
JAL-2333 corrected select columns with 'contact' feature
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2016-11-21
gmungoc
Merge branch 'develop' into bug/JAL-2323disulfideOverview
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2016-11-18
gmungoc
JAL-98 with the two types missing from last commit...
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2016-11-17
gmungoc
JAL-2323 revert to thread-safe iteration over array...
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2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
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2016-11-17
gmungoc
JAL-98 javadoc, third party acknowledgements (and very...
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2016-11-17
gmungoc
JAL-2327 disulfide bond abstracted to SequenceFeature...
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2016-11-17
gmungoc
JAL-2327 add isContactFeature
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2016-11-16
gmungoc
JAL-2323 render disulfide bond correctly on overview...
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2016-11-16
gmungoc
JAL-2324 fix and tests for comparison of Float.NaN...
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2016-11-16
gmungoc
JAL-2319 corrected reporting of SIFTS mapping
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2016-11-10
gmungoc
JAL-2320 thread to close Chimera viewer panel if Chimera...
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2016-11-10
gmungoc
JAL-2320 added getViewer() method to return Chimera...
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2016-11-08
gmungoc
JAL-2301 corrected search example to match AA properties...
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2016-11-08
gmungoc
JAL-2301 made T hydrophobic as per the cited conservation...
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2016-11-08
gmungoc
JAL-1961 added link to GFF3 format as well as GFF2
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2016-11-07
gmungoc
JAL-1270 renamed helper method so it is not run as...
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2016-11-07
gmungoc
JAL-2272 another test case
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2016-11-07
gmungoc
JAL-1805 groups=Functional added where missing
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2016-11-07
gmungoc
JAL-2272 unit tests added for Platform.isControlDown
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2016-11-07
gmungoc
JAL-2318 updated help text
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2016-11-07
gmungoc
JAL-2282 show url links that need checked; remove ...
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2016-11-04
gmungoc
JAL-2272 right mouse button on Mac is not Cmd equivalent!
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2016-11-04
gmungoc
JAL-966 JAL-1854 removed redundant methods / modifiers...
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2016-11-04
gmungoc
JAL-2302 unit tests added for Finder
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2016-11-03
gmungoc
JAL-2310 don't double-count sequence matches; code...
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2016-11-03
gmungoc
JAL-2281 test added to show searchRefs is now not case...
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2016-11-02
gmungoc
JAL-2301 table formatted, and corrected to match the...
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2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
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2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
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2016-11-02
gmungoc
JAL-98 test updated for percentage rounded
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2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
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2016-11-02
gmungoc
JAL-98 wording "negatively conserved" now "absence...
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2016-11-01
gmungoc
Conservation now using ResidueCount; tests added
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2016-11-01
gmungoc
JAL-98 use Integer constants; tests added for propHash...
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2016-11-01
gmungoc
JAL-98 typo in javadoc
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2016-11-01
gmungoc
JAL-98 simplified repeat() method
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2016-11-01
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-10-31
gmungoc
JAL-98 round when formatting dec places
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2016-10-31
gmungoc
JAL-1723 ellipsis in tooltip if xrefs to more than...
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2016-10-31
gmungoc
Merge branch 'develop' into features/JAL-1723_sequenceReport
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2016-10-27
gmungoc
JAL-2282 test assertions for 'other' dbsource
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2016-10-27
gmungoc
JAL-98 refactor bleachColour() to ColorUtils
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2016-10-27
gmungoc
JAL-2287 treat Escape like Cancel in dialog box
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2016-10-26
gmungoc
JAL-2287 Cancel option on Close Chimera? dialog
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2016-10-26
gmungoc
Merge branch 'bug/JAL-98consensusMemory' into develop
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2016-10-26
gmungoc
JAL-2286 modal residue check + commenting
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2016-10-26
gmungoc
JAL-98 null reference to globalColourScheme as it has...
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2016-10-26
gmungoc
JAL-2286 javadoc, refactor, unit tests for threshold...
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2016-10-25
gmungoc
JAL-2286 use constant for fixed colours
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2016-10-25
gmungoc
JAL-98 javadoc corrected
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2016-10-25
gmungoc
JAL-98 javadoc added
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2016-10-25
gmungoc
JAL-98 minor fixes to / tests for annotation derivation
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2016-10-25
gmungoc
JAL-98 field comments updated
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2016-10-25
gmungoc
JAL-98 small efficiency fix + commenting
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2016-10-25
gmungoc
JAL-98 javadoc / comments updated
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2016-10-24
gmungoc
JAL-98 fixme comment removed - nothing to do
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2016-10-24
gmungoc
JAL-98 ResidueCount 100% test coverage (and bug fixes!)
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2016-10-24
gmungoc
JAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl...
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2016-10-24
gmungoc
JAL-2283 corrected preferences settings for test
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2016-10-24
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
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2016-10-24
gmungoc
JAL-2283 set 'by conservation' correctly when changing...
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2016-10-14
gmungoc
Merge branch 'releases/Release_2_10_Branch' into task...
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2016-10-13
gmungoc
JAL-2253 2 second timeout on ping URL, default 5 minutes...
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2016-10-13
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
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2016-10-13
gmungoc
JAL-1479 revise warning message to suit all contexts
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2016-10-13
gmungoc
JAL-2044 increase Jmol file load timeout from 5 to...
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2016-10-13
gmungoc
JAL-2044 ensure AAStructureBindingModel.pdbEntry has...
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2016-10-13
gmungoc
JAL-2044 include model name in progress bar message...
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2016-10-11
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
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2016-10-11
gmungoc
JAL-2241 check for null jprovider when processing New...
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