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2017-07-24	gmungoc	JAL-2624 additional tests for FeatureColour.getColour(),	commit \| commitdiff \| tree
2017-07-24	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	commit \| commitdiff \| tree
2017-07-23	gmungoc	JAL-2481 JAL-2624 test for render feature below score...	commit \| commitdiff \| tree
2017-07-23	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	commit \| commitdiff \| tree
2017-07-22	gmungoc	JAL-2624 check feature colour threshold when colouring...	commit \| commitdiff \| tree
2017-07-22	gmungoc	JAL-2623 initialise colour threshold slider correctly	commit \| commitdiff \| tree
2017-07-19	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	commit \| commitdiff \| tree
2017-07-18	gmungoc	JAL-147 don't scroll up beyond startRes = 0	commit \| commitdiff \| tree
2017-07-18	gmungoc	JAL-147 corrected calculation of vertical scroll position...	commit \| commitdiff \| tree
2017-07-18	gmungoc	JAL-147 draw up to last position of wrapped alignment!	commit \| commitdiff \| tree
2017-07-17	gmungoc	Merge branch 'develop' into bug/JAL-147scrollWrappedView	commit \| commitdiff \| tree
2017-07-17	gmungoc	JAL-1648 JAL-2447 Spanish translations	commit \| commitdiff \| tree
2017-07-06	gmungoc	JAL-1858 fast paint wrapped highlights unless view...	commit \| commitdiff \| tree
2017-07-06	gmungoc	JAL-1858 scrollToWrappedVisible preserve any horizontal...	commit \| commitdiff \| tree
2017-07-06	gmungoc	JAL-147 prevent vertical Overview box movement in wrapped...	commit \| commitdiff \| tree
2017-07-06	gmungoc	JAL-147 unit test for hide/show sequences update ViewportRanges	commit \| commitdiff \| tree
2017-07-06	gmungoc	JAL-2605 ensure correct scale width calculation	commit \| commitdiff \| tree
2017-07-05	gmungoc	JAL-1858 fastpaint highlights on wrapped alignment	commit \| commitdiff \| tree
2017-07-05	gmungoc	JAL-147 don't update overview for column selection...	commit \| commitdiff \| tree
2017-07-05	gmungoc	JAL-147 additions to unit test, check for negative...	commit \| commitdiff \| tree
2017-07-05	gmungoc	JAL-147 prevent overview box move up over hidden first...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 revised update of startSeq, endSeq on unhide...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 unit tests added, unused setEndRes removed	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 corrected update of ViewportRanges for show...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 update ViewportRanges height after show/hide...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 remove redundant calls to update overview panel	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-2608 tidy up OverviewPanel when closed	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 call method that sets visible width when drawing...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 extract local variable for ease of debugging	commit \| commitdiff \| tree
2017-07-03	gmungoc	Merge branch 'develop' into bug/JAL-147scrollWrappedView	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 correct width out-by-one drawing ids	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 don't scroll Overview box outside panel dimensions	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 ViewportRanges calculate wrapped vertical scroll...	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 don't draw ScalePanel when in wrapped mode	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-2034 don't refresh Overview for selection in id...	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2505 correct handling of change of feature type	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2483 corrected finding feature groups	commit \| commitdiff \| tree
2017-06-30	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2602 unit test added	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-147 don't page up above origin, repaint ids for...	commit \| commitdiff \| tree
2017-06-30	gmungoc	Merge branch 'bug/JAL-2597' into develop	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2602 pulled up identical methods to base class	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2602 same fix for applet	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2526 correct treatment of contact features only...	commit \| commitdiff \| tree
2017-06-30	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	commit \| commitdiff \| tree
2017-06-29	gmungoc	JAL-147 improved wrapped scrolling (including Overview...	commit \| commitdiff \| tree
2017-06-29	gmungoc	JAL-2605 exclude left/right scale in sequence column...	commit \| commitdiff \| tree
2017-06-28	gmungoc	Merge branch 'bug/JAL-2600resizeflicker' into develop	commit \| commitdiff \| tree
2017-06-27	gmungoc	JAL-1858 repaint after Amend Features dialog	commit \| commitdiff \| tree
2017-06-27	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	commit \| commitdiff \| tree
2017-06-27	gmungoc	JAL-2602 check for null or empty description when copying...	commit \| commitdiff \| tree
2017-06-27	gmungoc	JAL-1858 highlights on wrapped panel - work in progress	commit \| commitdiff \| tree
2017-06-27	gmungoc	JAL-147 scroll wrapped panel by one width's worth at...	commit \| commitdiff \| tree
2017-06-26	gmungoc	JAL-1858 ensure full redraw on 'remove all selections'	commit \| commitdiff \| tree
2017-06-24	gmungoc	JAL-2589 unit test updated	commit \| commitdiff \| tree
2017-06-24	gmungoc	JAL-2547 fix case of gap followed by enclosing contact...	commit \| commitdiff \| tree
2017-06-24	gmungoc	JAL-1858 null img when doing full repaint of wrapped...	commit \| commitdiff \| tree
2017-06-24	gmungoc	JAL-1858 don't fastpaint highlights if wrapped format	commit \| commitdiff \| tree
2017-06-24	gmungoc	JAL-1858 refactored method to redraw previous/new highlighte...	commit \| commitdiff \| tree
2017-06-23	gmungoc	JAL-1858 handle hidden columns when computing region...	commit \| commitdiff \| tree
2017-06-23	gmungoc	JAL-1858 'fastPaint' of minimal region for highlights...	commit \| commitdiff \| tree
2017-06-22	gmungoc	JAL-2481 JAL-2593 JAL-2526 further optimisation of...	commit \| commitdiff \| tree
2017-06-22	gmungoc	JAL-2480 simpler and safer test to avoid adding duplicates	commit \| commitdiff \| tree
2017-06-21	gmungoc	JAL-2480 tidy generic initialisations, SequenceFeatures...	commit \| commitdiff \| tree
2017-06-21	gmungoc	JAL-2524 don't render up to a hidden marker beyond...	commit \| commitdiff \| tree
2017-06-20	gmungoc	JAL-2526 don't retain lastColumnPosition from an invalidated...	commit \| commitdiff \| tree
2017-06-15	gmungoc	JAL-2563 test updated for fix	commit \| commitdiff \| tree
2017-06-15	gmungoc	Merge branch 'bug/JAL-2386groupConservationColouring...	commit \| commitdiff \| tree
2017-06-15	gmungoc	JAL-2418 typos	commit \| commitdiff \| tree
2017-06-15	gmungoc	Merge branch 'bug/JAL-2589gapColour' into develop	commit \| commitdiff \| tree
2017-06-14	gmungoc	JAL-2598 Sequence.getSequence return a copy of the...	commit \| commitdiff \| tree
2017-06-13	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	commit \| commitdiff \| tree
2017-06-12	gmungoc	JAL-2577 mirror select/hide by annotation in split...	commit \| commitdiff \| tree
2017-06-12	gmungoc	JAL-2577 mirror hide/select columns by annotation across...	commit \| commitdiff \| tree
2017-06-09	gmungoc	JAL-2589 render colour scheme gap colour in overview	commit \| commitdiff \| tree
2017-06-09	gmungoc	JAL-2594 avoid stack trace creating feature on gapped...	commit \| commitdiff \| tree
2017-06-09	gmungoc	JAL-2480 tidy javadoc	commit \| commitdiff \| tree
2017-06-09	gmungoc	JAL-2593 avoid redundant rendering of co-located features	commit \| commitdiff \| tree
2017-06-08	gmungoc	JAL-2526 correct boundary conditions for sequence left...	commit \| commitdiff \| tree
2017-06-08	gmungoc	JAL-2386 JAL-2570 use ResidueShader copy constructor...	commit \| commitdiff \| tree
2017-06-08	gmungoc	JAL-2526 cache first/last residue column positions...	commit \| commitdiff \| tree
2017-06-08	gmungoc	JAL-2526 setStatusMessage avoid redundant findPosition...	commit \| commitdiff \| tree
2017-06-08	gmungoc	JAL-2526 reuse findIndex result if start==end	commit \| commitdiff \| tree
2017-06-07	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	commit \| commitdiff \| tree
2017-06-07	gmungoc	JAL-2386 ensure group conservation shading is applied...	commit \| commitdiff \| tree
2017-06-06	gmungoc	JAL-2589 correct colour for Gap in Score and User Defined...	commit \| commitdiff \| tree
2017-06-06	gmungoc	JAL-2526 less stringent test for invalid cursor	commit \| commitdiff \| tree
2017-06-05	gmungoc	JAL-2505 comments updated	commit \| commitdiff \| tree
2017-06-05	gmungoc	JAL-2480 remove redundant method, further test coverage	commit \| commitdiff \| tree
2017-06-05	gmungoc	JAL-2505 explicit (and final) contactFeature property	commit \| commitdiff \| tree
2017-06-05	gmungoc	Merge branch 'features/JAL-2526sequenceCursor' into	commit \| commitdiff \| tree
2017-06-05	gmungoc	Merge branch 'features/JAL-2446NCList' into	commit \| commitdiff \| tree
2017-06-05	gmungoc	Merge branch 'features/JAL-2446NCList' into	commit \| commitdiff \| tree
2017-06-05	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	commit \| commitdiff \| tree
2017-06-02	gmungoc	Merge branch 'features/JAL-2446NCList' into features...	commit \| commitdiff \| tree
2017-06-02	gmungoc	Merge branch 'features/JAL-2446NCList' into features...	commit \| commitdiff \| tree
2017-06-02	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	commit \| commitdiff \| tree
2017-06-02	gmungoc	JAL-2526 additional tests for findPosition with/without...	commit \| commitdiff \| tree
2017-06-02	gmungoc	Merge branch 'features/JAL-2446NCList' into features...	commit \| commitdiff \| tree
2017-06-01	gmungoc	JAL-2526 additional calls to sequenceChanged() after...	commit \| commitdiff \| tree
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