| 2020-03-16 |
gmungoc | JAL-3551 tidying, improved commands, fix Jmol model...
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commit | commitdiff | tree |
| 2020-03-16 |
gmungoc | JAL-3551 the correct PyMOL colour by chain command
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commit | commitdiff | tree |
| 2020-03-13 |
gmungoc | JAL-3551 working proof of concept of Jalview driving...
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | Merge branch 'develop' into feature/JAL-2422ChimeraX
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3528 unit tests added for failed lookup, Javadoc
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3407 3549 in release notes
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3549 JAL-3305 no Sort By Score / Density if no...
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3412 update layout whenever desired id width changes
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3187 unit test for findComplementFeaturesAtResidue
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3407 added 3468 to release notes
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | Merge branch 'feature/JAL-3468featureDescriptionEllipsis...
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3468 i18n and additional unit tests
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3407 release note tweaks, added 3533 3538 3534...
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commit | commitdiff | tree |
| 2020-03-03 |
gmungoc | JAL-3158 superseded superposeStructures methods removed
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commit | commitdiff | tree |
| 2020-03-03 |
gmungoc | JAL-3518 more pull up / test coverage of structure...
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commit | commitdiff | tree |
| 2020-02-29 |
gmungoc | JAL-3518 correct override for ChimeraX colour by residues
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commit | commitdiff | tree |
| 2020-02-28 |
gmungoc | JAL-3518 basic refactoring / pull up of superposeStructures...
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commit | commitdiff | tree |
| 2020-02-21 |
gmungoc | JAL-3518 more extraction of ChimeraX commands as overrides
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commit | commitdiff | tree |
| 2020-02-21 |
gmungoc | JAL-2422 tidy of methods and parameters
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commit | commitdiff | tree |
| 2020-02-21 |
gmungoc | JAL-2422 general pull-up/removal of common or unused...
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commit | commitdiff | tree |
| 2020-02-20 |
gmungoc | JAL-3187 repaint complement after loading on features
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commit | commitdiff | tree |
| 2020-02-20 |
gmungoc | JAL-2422 pull-up refactoring of structure commands...
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commit | commitdiff | tree |
| 2020-02-18 |
Mungo Carstairs | JAL-3536 JAL-3187 don't create duplicate CDS-to-protein...
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commit | commitdiff | tree |
| 2020-02-04 |
gmungoc | JAL-2422 remove temporary debug code
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commit | commitdiff | tree |
| 2020-02-04 |
gmungoc | JAL-2422 fixed stopProgressBar (broken in pull up refactoring)
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commit | commitdiff | tree |
| 2020-02-04 |
gmungoc | JAL-2422 pull up refactoring in preparation for ChimeraX...
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commit | commitdiff | tree |
| 2020-01-31 |
gmungoc | JAL-2422 temporary hacks removed; use hex colours for...
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commit | commitdiff | tree |
| 2020-01-31 |
gmungoc | JAL-2422 more responsive Chimera/X path prompts in...
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commit | commitdiff | tree |
| 2020-01-30 |
gmungoc | JAL-2422 save/restore ChimeraX session
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commit | commitdiff | tree |
| 2020-01-28 |
gmungoc | JAL-3341 debug for failing unit test
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commit | commitdiff | tree |
| 2020-01-28 |
gmungoc | Merge branch 'feature/JAL-3121gffAttributeMap' into...
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commit | commitdiff | tree |
| 2020-01-28 |
gmungoc | JAL-3187 one more obsolete method removed
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commit | commitdiff | tree |
| 2020-01-28 |
gmungoc | JAL-2422 ChimeraX added to Preferences
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commit | commitdiff | tree |
| 2020-01-24 |
gmungoc | JAL=3121 more data format validation/tests, help text...
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commit | commitdiff | tree |
| 2020-01-23 |
gmungoc | JAL-3121 update help page for GFF column 9 nested attributes
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commit | commitdiff | tree |
| 2020-01-23 |
gmungoc | JAL-3121 'attributes map' in GFF3 without special ...
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commit | commitdiff | tree |
| 2020-01-14 |
gmungoc | JAL-2422 proof of concept adaptations for ChimeraX...
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commit | commitdiff | tree |
| 2019-12-20 |
Ben Soares | JAL-3473 Checked value of def and min. Set def to min...
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commit | commitdiff | tree |
| 2019-12-13 |
gmungoc | JAL-2422 'label' command to highlight ChimeraX residue...
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commit | commitdiff | tree |
| 2019-12-13 |
gmungoc | JAL-2422 write Jalview features to ChimeraX via command...
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commit | commitdiff | tree |
| 2019-12-13 |
gmungoc | JAL-2422 basic proof of concept of ChimeraX opened...
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commit | commitdiff | tree |
| 2019-11-01 |
gmungoc | JAL-3468 unit tests updated for changes
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commit | commitdiff | tree |
| 2019-10-31 |
gmungoc | JAL-3468 truncate feature description to 40 chars in...
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commit | commitdiff | tree |
| 2019-09-26 |
gmungoc | JAL-2481 remove code duplication left by merge
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commit | commitdiff | tree |
| 2019-09-26 |
gmungoc | JAL-3441 action double-click in Feature Type column...
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commit | commitdiff | tree |
| 2019-08-23 |
gmungoc | JAL-3141 correct cast of spinner value
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3121 slightly cleaner parsing of, and unit test...
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | Merge branch 'develop' into feature/JAL-3121gffAttributeMap
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3187 case-insensitive codon variant calculation
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued...
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3187 one more obsolete method removed
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commit | commitdiff | tree |
| 2019-08-21 |
gmungoc | JAL-3187 minor code tidying, todo removal
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commit | commitdiff | tree |
| 2019-08-19 |
gmungoc | JAL-3412 calculateIdWidth - more consistency, constants...
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commit | commitdiff | tree |
| 2019-08-09 |
gmungoc | JAL-3187 removal of variant feature (non-virtual) transfer...
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commit | commitdiff | tree |
| 2019-08-07 |
gmungoc | JAL-3187 (fudge) look in both alignments for stored...
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commit | commitdiff | tree |
| 2019-08-07 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures
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commit | commitdiff | tree |
| 2019-07-31 |
gmungoc | JAL-3389 add .py to restored Chimera session filename...
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commit | commitdiff | tree |
| 2019-07-31 |
gmungoc | Merge branch 'bug/JAL-3388structureChooserSorting'...
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commit | commitdiff | tree |
| 2019-07-30 |
gmungoc | JAL-3198 more efficient Sequence.getDisplayId()
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commit | commitdiff | tree |
| 2019-07-30 |
gmungoc | JAL-3388 correct class for column 0 Ref Sequence
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3386 correct wrapped width calculation for headless...
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3377 more reused of SeqCanvas.computeWrappedGeometry
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3377 add seq-annotations gap to cheight not to...
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3377 Javadoc added for getWrappedHeight()
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3377 corrected wrapped widths height for IdCanvas
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3377 include seq-annotation spacing in getWrappedHeight()
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commit | commitdiff | tree |
| 2019-07-26 |
gmungoc | Merge branch 'features/JAL-3375vcfValidation' into
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commit | commitdiff | tree |
| 2019-07-26 |
gmungoc | JAL-1793 only decode specific special characters in...
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commit | commitdiff | tree |
| 2019-07-26 |
gmungoc | JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
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commit | commitdiff | tree |
| 2019-07-26 |
gmungoc | JAL-3375 format validate VCF Integer and Float fields
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commit | commitdiff | tree |
| 2019-07-25 |
gmungoc | JAL-3375 ignore '.' values for VCF data
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commit | commitdiff | tree |
| 2019-07-16 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures
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commit | commitdiff | tree |
| 2019-07-16 |
gmungoc | JAL-2987 tolerate null double values when formatting...
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commit | commitdiff | tree |
| 2019-07-10 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures
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commit | commitdiff | tree |
| 2019-07-08 |
gmungoc | JAL-3187 derived peptide variants tweaks and tests
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commit | commitdiff | tree |
| 2019-07-05 |
gmungoc | JAL-3187 initial refactoring towards peptide variant...
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commit | commitdiff | tree |
| 2019-07-05 |
gmungoc | JAL-1793 apply URL decoding when saving VCF attribute...
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commit | commitdiff | tree |
| 2019-07-04 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2019-07-04 |
gmungoc | JAL-3111 help pages minor corrections
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commit | commitdiff | tree |
| 2019-06-18 |
gmungoc | JAL-3313 don't double count mapped codons
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commit | commitdiff | tree |
| 2019-06-18 |
gmungoc | JAL-3187 javadoc
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commit | commitdiff | tree |
| 2019-06-18 |
gmungoc | JAL-3304 option to export linked features also for...
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commit | commitdiff | tree |
| 2019-06-18 |
gmungoc | JAL-3304 option to export linked features in Jalview...
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commit | commitdiff | tree |
| 2019-06-18 |
gmungoc | JAL-3187 i18n show linked features checkboxes
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commit | commitdiff | tree |
| 2019-06-18 |
gmungoc | JAL-3305 mirror popup menu column selections in split...
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commit | commitdiff | tree |
| 2019-06-17 |
gmungoc | JAL-2792 JAL-3187 linked features (if shown) in Feature...
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commit | commitdiff | tree |
| 2019-06-17 |
gmungoc | JAL-3187 update alignAs code and unit tests for 'shared...
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commit | commitdiff | tree |
| 2019-06-17 |
gmungoc | JAL-3187 update unit test - protein variants not now...
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commit | commitdiff | tree |
| 2019-06-17 |
gmungoc | JAL-3187 add sequence to feature details table (and...
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commit | commitdiff | tree |
| 2019-06-14 |
gmungoc | JAL-3302 transfer visible 'linked' features to Chimera
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commit | commitdiff | tree |
| 2019-06-13 |
gmungoc | JAL-3303 ignore deletions when computing peptide variants
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commit | commitdiff | tree |
| 2019-06-13 |
gmungoc | JAL-3143 recognise lnc_RNA as transcript
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commit | commitdiff | tree |
| 2019-06-11 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures
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commit | commitdiff | tree |
| 2019-06-11 |
gmungoc | JAL-3143 also parse "phase" from JSON response if present
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commit | commitdiff | tree |
| 2019-06-11 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures
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commit | commitdiff | tree |
| 2019-06-11 |
gmungoc | JAL-3111 update release date placeholder
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commit | commitdiff | tree |
| 2019-06-11 |
gmungoc | JAL-3288 fixes for gain/lose focus
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commit | commitdiff | tree |
| 2019-06-11 |
gmungoc | JAL-3187 CDS has same dataset sequence as transcript
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commit | commitdiff | tree |
| 2019-06-10 |
gmungoc | JAL-3296 ensure sequence cursor reset when sequence...
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commit | commitdiff | tree |
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