| 2016-11-08 |
gmungoc | JAL-1961 added link to GFF3 format as well as GFF2
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| 2016-11-07 |
gmungoc | JAL-1270 renamed helper method so it is not run as...
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commit | commitdiff | tree |
| 2016-11-07 |
gmungoc | JAL-2272 another test case
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| 2016-11-07 |
gmungoc | JAL-1805 groups=Functional added where missing
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commit | commitdiff | tree |
| 2016-11-07 |
gmungoc | JAL-2272 unit tests added for Platform.isControlDown
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commit | commitdiff | tree |
| 2016-11-07 |
gmungoc | JAL-2318 updated help text
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| 2016-11-07 |
gmungoc | JAL-2282 show url links that need checked; remove ...
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commit | commitdiff | tree |
| 2016-11-04 |
gmungoc | JAL-2272 right mouse button on Mac is not Cmd equivalent!
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commit | commitdiff | tree |
| 2016-11-03 |
gmungoc | JAL-2281 test added to show searchRefs is now not case...
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| 2016-11-02 |
gmungoc | JAL-2301 table formatted, and corrected to match the...
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| 2016-11-02 |
gmungoc | JAL-98 JAL-1854 encapsulate 'magic number' threshold...
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| 2016-11-02 |
gmungoc | JAL-98 ProfileI interface for Profile
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commit | commitdiff | tree |
| 2016-11-02 |
gmungoc | JAL-98 test updated for percentage rounded
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| 2016-11-02 |
gmungoc | JAL-98 Profile and ResidueCount moved from analysis...
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| 2016-11-02 |
gmungoc | JAL-98 wording "negatively conserved" now "absence...
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commit | commitdiff | tree |
| 2016-11-01 |
gmungoc | Conservation now using ResidueCount; tests added
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commit | commitdiff | tree |
| 2016-11-01 |
gmungoc | JAL-98 use Integer constants; tests added for propHash...
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commit | commitdiff | tree |
| 2016-11-01 |
gmungoc | JAL-98 typo in javadoc
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commit | commitdiff | tree |
| 2016-11-01 |
gmungoc | JAL-98 simplified repeat() method
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commit | commitdiff | tree |
| 2016-11-01 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2016-10-31 |
gmungoc | JAL-98 round when formatting dec places
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commit | commitdiff | tree |
| 2016-10-27 |
gmungoc | JAL-2282 test assertions for 'other' dbsource
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commit | commitdiff | tree |
| 2016-10-27 |
gmungoc | JAL-98 refactor bleachColour() to ColorUtils
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commit | commitdiff | tree |
| 2016-10-27 |
gmungoc | JAL-2287 treat Escape like Cancel in dialog box
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commit | commitdiff | tree |
| 2016-10-26 |
gmungoc | JAL-2287 Cancel option on Close Chimera? dialog
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commit | commitdiff | tree |
| 2016-10-26 |
gmungoc | Merge branch 'bug/JAL-98consensusMemory' into develop
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commit | commitdiff | tree |
| 2016-10-26 |
gmungoc | JAL-2286 modal residue check + commenting
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commit | commitdiff | tree |
| 2016-10-26 |
gmungoc | JAL-98 null reference to globalColourScheme as it has...
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| 2016-10-26 |
gmungoc | JAL-2286 javadoc, refactor, unit tests for threshold...
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commit | commitdiff | tree |
| 2016-10-25 |
gmungoc | JAL-2286 use constant for fixed colours
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commit | commitdiff | tree |
| 2016-10-25 |
gmungoc | JAL-98 javadoc corrected
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commit | commitdiff | tree |
| 2016-10-25 |
gmungoc | JAL-98 javadoc added
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commit | commitdiff | tree |
| 2016-10-25 |
gmungoc | JAL-98 minor fixes to / tests for annotation derivation
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commit | commitdiff | tree |
| 2016-10-25 |
gmungoc | JAL-98 field comments updated
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commit | commitdiff | tree |
| 2016-10-25 |
gmungoc | JAL-98 small efficiency fix + commenting
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commit | commitdiff | tree |
| 2016-10-25 |
gmungoc | JAL-98 javadoc / comments updated
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commit | commitdiff | tree |
| 2016-10-24 |
gmungoc | JAL-98 fixme comment removed - nothing to do
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| 2016-10-24 |
gmungoc | JAL-98 ResidueCount 100% test coverage (and bug fixes!)
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| 2016-10-24 |
gmungoc | JAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl...
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commit | commitdiff | tree |
| 2016-10-24 |
gmungoc | JAL-2283 corrected preferences settings for test
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commit | commitdiff | tree |
| 2016-10-24 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory
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commit | commitdiff | tree |
| 2016-10-24 |
gmungoc | JAL-2283 set 'by conservation' correctly when changing...
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| 2016-10-14 |
gmungoc | Merge branch 'releases/Release_2_10_Branch' into task...
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commit | commitdiff | tree |
| 2016-10-13 |
gmungoc | JAL-2253 2 second timeout on ping URL, default 5 minutes...
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commit | commitdiff | tree |
| 2016-10-13 |
gmungoc | Merge branch 'releases/Release_2_10_Branch' into develop
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commit | commitdiff | tree |
| 2016-10-13 |
gmungoc | JAL-1479 revise warning message to suit all contexts
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commit | commitdiff | tree |
| 2016-10-13 |
gmungoc | JAL-2044 increase Jmol file load timeout from 5 to...
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commit | commitdiff | tree |
| 2016-10-13 |
gmungoc | JAL-2044 ensure AAStructureBindingModel.pdbEntry has...
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commit | commitdiff | tree |
| 2016-10-13 |
gmungoc | JAL-2044 include model name in progress bar message...
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commit | commitdiff | tree |
| 2016-10-11 |
gmungoc | Merge branch 'releases/Release_2_10_Branch' into develop
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commit | commitdiff | tree |
| 2016-10-11 |
gmungoc | JAL-2241 check for null jprovider when processing New...
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commit | commitdiff | tree |
| 2016-10-11 |
gmungoc | Merge branch 'releases/Release_2_10_Branch' into develop
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commit | commitdiff | tree |
| 2016-10-11 |
gmungoc | JAL-1479 small tidy of error message when Sifts mapping...
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commit | commitdiff | tree |
| 2016-10-11 |
gmungoc | JAL-2233 reverted changes to Jmol logging levels
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commit | commitdiff | tree |
| 2016-10-06 |
gmungoc | JAL-2254 map error text in root node of EMBL XML response
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commit | commitdiff | tree |
| 2016-10-06 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory
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commit | commitdiff | tree |
| 2016-10-06 |
gmungoc | Merge branch 'develop' into task/JAL-2196pdbeProperties
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commit | commitdiff | tree |
| 2016-10-06 |
gmungoc | JAL-2252 now buffered read of 3 lines of a time in...
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commit | commitdiff | tree |
| 2016-10-06 |
gmungoc | JAL-2245 checks for null added (in case EMBL fetch...
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commit | commitdiff | tree |
| 2016-10-05 |
gmungoc | Merge branch 'develop' into task/JAL-2196pdbeProperties
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commit | commitdiff | tree |
| 2016-10-05 |
gmungoc | JAL-1191 revert to using SequenceOntologyLite due to...
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commit | commitdiff | tree |
| 2016-10-05 |
gmungoc | JAL-1191 configure full SO for desktop, SOLite for...
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commit | commitdiff | tree |
| 2016-10-05 |
gmungoc | JAL-2245 defence against NullPointer if no EMBL data...
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commit | commitdiff | tree |
| 2016-10-05 |
gmungoc | JAL-1191 use full SO in desktop application
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commit | commitdiff | tree |
| 2016-10-05 |
gmungoc | JAL-2105 update Ensembl REST version to 4.7
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commit | commitdiff | tree |
| 2016-10-05 |
gmungoc | JAL-1191 refined warning message
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commit | commitdiff | tree |
| 2016-10-05 |
gmungoc | JAL-1191 added mRNA isA transcript to SequenceOntologyLite...
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commit | commitdiff | tree |
| 2016-10-04 |
gmungoc | Merge branch 'bug/JAL-2245enaXmlChange' into develop
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commit | commitdiff | tree |
| 2016-10-04 |
gmungoc | Merge branch 'bug/JAL-2210_hack_for_Release_2_10' into...
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commit | commitdiff | tree |
| 2016-10-04 |
gmungoc | JAL-2245 Castor mapping and code changes for change...
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commit | commitdiff | tree |
| 2016-10-04 |
gmungoc | JAL-2232 some fix / partial fix of failing tests
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commit | commitdiff | tree |
| 2016-10-04 |
gmungoc | JAL-2232 added test that failed before last fix, passes...
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commit | commitdiff | tree |
| 2016-10-04 |
gmungoc | JAL-2232 JAL-2154 update dbrefs to newly created dataset...
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commit | commitdiff | tree |
| 2016-10-03 |
gmungoc | JAL-2110 javadoc formatting only
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commit | commitdiff | tree |
| 2016-10-03 |
gmungoc | JAL-2110 JAL-1705 handle not found (400) better
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commit | commitdiff | tree |
| 2016-10-03 |
gmungoc | JAL-2110 additional tests for setDatasetSequence, javadoc...
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commit | commitdiff | tree |
| 2016-10-03 |
gmungoc | JAL-98 throw exception (unhandled) for int overthrow...
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commit | commitdiff | tree |
| 2016-10-03 |
gmungoc | JAL-98 use Profile to store consensus, ResidueCount...
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commit | commitdiff | tree |
| 2016-10-03 |
gmungoc | JAL-98 bespoke fast percentage formatter for consensus...
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commit | commitdiff | tree |
| 2016-09-30 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory
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commit | commitdiff | tree |
| 2016-09-30 |
gmungoc | JAL-2236 code restored (and some compiler warnings...
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commit | commitdiff | tree |
| 2016-09-30 |
gmungoc | Merge branch 'develop' into features/JAL-1856dbRefFetcherMes...
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commit | commitdiff | tree |
| 2016-09-30 |
gmungoc | JAL-2234 FER1_ARATH renamed FER2_ARATH and vice versa
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commit | commitdiff | tree |
| 2016-09-30 |
gmungoc | JAL-2236 fixes for desktop and applet implementation...
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commit | commitdiff | tree |
| 2016-09-29 |
gmungoc | JAL-1856 better warning messages for sequence matching...
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commit | commitdiff | tree |
| 2016-09-29 |
gmungoc | JAL-2213 code warnings addressed (typed collections...
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commit | commitdiff | tree |
| 2016-09-29 |
gmungoc | JAL-2213 removed PDB from db sources list; also code...
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commit | commitdiff | tree |
| 2016-09-29 |
gmungoc | JAL-2213 made RESNUM constant private (not used elsewhere...
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commit | commitdiff | tree |
| 2016-09-29 |
gmungoc | JAL-2213 corrected wait for files to load in Jmol;...
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commit | commitdiff | tree |
| 2016-09-29 |
gmungoc | JAL-2237 apply default filter as sort in initial search
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commit | commitdiff | tree |
| 2016-09-29 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2016-09-29 |
gmungoc | JAL-2047 allow title to be shrunk; spelling fix
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commit | commitdiff | tree |
| 2016-09-29 |
gmungoc | JAL-1544 typo
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commit | commitdiff | tree |
| 2016-09-29 |
gmungoc | JAL-1903 increase REST reply timeout from 5 to 15 seconds
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commit | commitdiff | tree |
| 2016-09-27 |
gmungoc | JAL-2233 less verbose logging for Jmol
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commit | commitdiff | tree |
| 2016-09-27 |
gmungoc | JAL-2231 save preferred scroll height _without_ progress...
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commit | commitdiff | tree |
| 2016-09-27 |
gmungoc | JAL-2230 JAL-2049 added sequence feature transfer to
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commit | commitdiff | tree |
| 2016-09-27 |
gmungoc | JAL-2230 use correct mapping to transfer features to...
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commit | commitdiff | tree |
| 2016-09-26 |
gmungoc | JAL-98 bug fix, string optimisation, sorted AA properties
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commit | commitdiff | tree |
| 2016-09-26 |
gmungoc | JAL-98 don't include gaps in maxResidue!
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commit | commitdiff | tree |
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