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2023-10-26	James Procter	Merge branch 'bug/JAL-4313_cme_in_tests' into patch...	commit \| commitdiff \| tree
2023-10-25	James Procter	JAL-4312 defend against ConcurrentModificationException	commit \| commitdiff \| tree
2023-10-25	James Procter	JAL-4312 call AlignFrame.setAnnotationsVisibility on...	commit \| commitdiff \| tree
2023-10-23	James Procter	JAL-4311 fix ranking so models with like scores are...	commit \| commitdiff \| tree
2023-10-23	James Procter	JAL-4311 failing test case for 3d-beacons epas1_human...	commit \| commitdiff \| tree
2023-10-23	James Procter	JAL-4310 let the user know when model pages are not...	commit \| commitdiff \| tree
2023-10-23	James Procter	Merge branch 'develop' into improvement/JAL-4124_dont_duplac...	commit \| commitdiff \| tree
2023-10-23	James Procter	JAL-4090 release weds 25th Oct 23 - JAL-4308 release...	commit \| commitdiff \| tree
2023-10-23	James Procter	Merge branch 'feature/JAL-4307_hetatm_showhide' into...	commit \| commitdiff \| tree
2023-10-23	James Procter	Merge branch 'improvement/JAL-4308_smalleridtooltip...	commit \| commitdiff \| tree
2023-10-23	James Procter	JAL-4090 defensive check for featureSettings redraws...	commit \| commitdiff \| tree
2023-10-23	James Procter	JAL-4308 reduce number of refs to 5, always have canonical...	commit \| commitdiff \| tree
2023-10-22	James Procter	JAL-4153 avoid use of invokeAndWait, increase wait...	commit \| commitdiff \| tree
2023-10-22	James Procter	JAL-1551 errant tab and import	commit \| commitdiff \| tree
2023-10-22	James Procter	Merge branch 'patch/JAL-4298_synchronize_consoledoc...	commit \| commitdiff \| tree
2023-10-22	James Procter	Merge branch 'improvement/JAL-3783_upgrade_to_groovy...	commit \| commitdiff \| tree
2023-10-22	James Procter	Merge branch 'jims/bug/JAL-4298_java_console_causing_hang_at...	commit \| commitdiff \| tree
2023-10-22	James Procter	Merge branch 'develop' into improvement/JAL-3783_upgrade_to_...	commit \| commitdiff \| tree
2023-10-22	James Procter	Merge branch 'jims/bug/JAL-4298_java_console_causing_hang_at...	commit \| commitdiff \| tree
2023-10-22	James Procter	JAL-4090 update docs for changed gradle -P options...	commit \| commitdiff \| tree
2023-10-21	James Procter	JAL-1332 JAL-4298 JAL-3772 rejig the quit handler so...	commit \| commitdiff \| tree
2023-10-21	James Procter	Merge branch 'patch/JAL-4110_stdout_for_tests' into...	commit \| commitdiff \| tree
2023-10-21	James Procter	JAL-4110 allow configuration of stdout/err test output...	commit \| commitdiff \| tree
2023-10-21	James Procter	Merge branch 'develop' into patch/JAL-4110_stdout_for_tests	commit \| commitdiff \| tree
2023-10-20	James Procter	Merge branch 'improvement/JAL-3783_upgrade_to_groovy...	commit \| commitdiff \| tree
2023-10-20	James Procter	JAL-4298 reuse existing log level preference method	commit \| commitdiff \| tree
2023-10-20	James Procter	JAL-4307 also report molecule name in tooltip for show...	commit \| commitdiff \| tree
2023-10-20	James Procter	Merge branch 'feature/JAL-4307_hetatm_showhide' into...	commit \| commitdiff \| tree
2023-10-20	James Procter	Merge branch 'patch/JAL-4298_synchronize_consoledoc...	commit \| commitdiff \| tree
2023-10-20	James Procter	JAL-4307 some models return null for hetatm list	commit \| commitdiff \| tree
2023-10-20	James Procter	JAL-4298 try much harder to avoid modifying console...	commit \| commitdiff \| tree
2023-10-19	James Procter	JAL-4298 avoid deadlock waiting to update doc when...	commit \| commitdiff \| tree
2023-10-19	James Procter	JAL-4307 View->Ligands submenu, implementation for...	commit \| commitdiff \| tree
2023-10-18	James Procter	Merge branch 'doc/JAL-4090_Release_2_11_3_0' into develop	commit \| commitdiff \| tree
2023-10-18	James Procter	JAL-4090 JAL-4303 as known defect	commit \| commitdiff \| tree
2023-10-17	James Procter	Merge branch 'bug/JAL-4302_treeheightrendererbroke...	commit \| commitdiff \| tree
2023-10-17	James Procter	Merge branch 'doc/JAL-4090_Release_2_11_3_0' into develop	commit \| commitdiff \| tree
2023-10-17	James Procter	JAL-4090 JAL-4302 marked as known defect	commit \| commitdiff \| tree
2023-10-17	James Procter	JAL-4134 TODO printNode update for columnTrees	commit \| commitdiff \| tree
2023-10-17	James Procter	JAL-4134 JAL-4302 remove unnecessary casts	commit \| commitdiff \| tree
2023-10-17	James Procter	JAL-4090 JAL-4089 document use of selected columns...	commit \| commitdiff \| tree
2023-10-17	James Procter	Merge branch 'bug/JAL-4089_selectedcolshiddenregions...	commit \| commitdiff \| tree
2023-10-17	James Procter	JAL-4089 selected columns are reported in absolute...	commit \| commitdiff \| tree
2023-10-16	James Procter	Merge branch 'bug/JAL-4295_hangjmolandmouseovers' into...	commit \| commitdiff \| tree
2023-10-13	James Procter	JAL-4295 concatenate all mouseover highlights into...	commit \| commitdiff \| tree
2023-10-05	James Procter	Merge branch 'doc/JAL-4090_Release_2_11_3_0' into develop	commit \| commitdiff \| tree
2023-10-05	James Procter	JAL-4090 JAL-3858 paedocs	commit \| commitdiff \| tree
2023-10-03	James Procter	JAL-4217 move CommandsTest to testTask3 involving structure...	commit \| commitdiff \| tree
2023-10-03	James Procter	Merge branch 'patch/JAL-4062_sort_and_merge_contiguousregion...	commit \| commitdiff \| tree
2023-10-03	James Procter	JAL-4090 fix up release notes and what’s new (inc removing...	commit \| commitdiff \| tree
2023-10-03	James Procter	Merge branch 'develop' into doc/JAL-4090_Release_2_11_3_0	commit \| commitdiff \| tree
2023-10-03	James Procter	JAL-4061 JAL-4062 update find box image and docs in...	commit \| commitdiff \| tree
2023-10-03	James Procter	Merge branch 'develop' into doc/JAL-4090_Release_2_11_3_0	commit \| commitdiff \| tree
2023-10-03	James Procter	Merge branch 'bug/JAL-244_interactingpngexportnotwysiwig...	commit \| commitdiff \| tree
2023-10-03	James Procter	JAL-4090 tweak pae doc	commit \| commitdiff \| tree
2023-10-01	James Procter	JAL-4090 JAL-3855 updated figure and doc.. a little	commit \| commitdiff \| tree
2023-10-01	James Procter	JAL-244 ensure background is completely filled with...	commit \| commitdiff \| tree
2023-10-01	James Procter	JAL-4090 JAL-4291 disable failing test and note as...	commit \| commitdiff \| tree
2023-10-01	James Procter	JAL-244 attempt to fix broken test - still needs to...	commit \| commitdiff \| tree
2023-10-01	James Procter	JAL-244 export image with full width IDs regardless...	commit \| commitdiff \| tree
2023-10-01	James Procter	JAL-244 JAL-4091 allow calculation of label id width...	commit \| commitdiff \| tree
2023-10-01	James Procter	JAL-244 JAL-4091 FIXME for JAL-3362 patch testCalculateIdWid...	commit \| commitdiff \| tree
2023-10-01	James Procter	JAL-4160 update args used in test suite for new CLI...	commit \| commitdiff \| tree
2023-09-29	James Procter	Merge branch 'bug/JAL-244_interactingpngexportnotwysiwig...	commit \| commitdiff \| tree
2023-09-29	James Procter	JAL-629 JAL-4265 JAL-4286 report the filename for the...	commit \| commitdiff \| tree
2023-09-29	James Procter	JAL-4090 JAL-629 FER1+SPIOL -> FER1_SPIOL in command...	commit \| commitdiff \| tree
2023-09-29	James Procter	JAL-244 JAL-4090 use current IdWidth when exporting...	commit \| commitdiff \| tree
2023-09-29	James Procter	JAL-4090 figures in paematrix doc	commit \| commitdiff \| tree
2023-09-29	James Procter	JAL-4288 fix up gradle generated getdown launch jvl...	commit \| commitdiff \| tree
2023-09-29	James Procter	JAL-4090 fix url to new cli docs	commit \| commitdiff \| tree
2023-09-29	James Procter	JAL-4153 move JvCacheableInputBoxTest to testTask2	commit \| commitdiff \| tree
2023-09-29	James Procter	JAL-3858 fix check annotation row and column positioning...	commit \| commitdiff \| tree
2023-09-28	James Procter	JAL-4090 JAL-3855 figure showing PAEs for epas1 homolog...	commit \| commitdiff \| tree
2023-09-28	James Procter	JAL-1556 JAL-4090 colour by annotation options on annotation...	commit \| commitdiff \| tree
2023-09-28	James Procter	JAL-3858 don’t divide if we only had one value to count	commit \| commitdiff \| tree
2023-09-28	James Procter	JAL-3858 check annotation row and column positioning...	commit \| commitdiff \| tree
2023-09-28	James Procter	JAL-3858 improved contactInterval computation and added...	commit \| commitdiff \| tree
2023-09-26	James Procter	JAL-3858 JAL-4090 pae matrix docs. WIP	commit \| commitdiff \| tree
2023-09-26	James Procter	JAL-3858 JAL-4090 avoid NPE when given out of bound...	commit \| commitdiff \| tree
2023-09-25	James Procter	JAL-3858 JAL-4090 PAE documentation..	commit \| commitdiff \| tree
2023-09-25	James Procter	JAL-3858 minimum value for a range is used to shade...	commit \| commitdiff \| tree
2023-09-25	James Procter	JAL-3858 javadoc and slightly revised green linear...	commit \| commitdiff \| tree
2023-09-25	James Procter	JAL-3858 report PAE range with sensible precision	commit \| commitdiff \| tree
2023-09-25	James Procter	JAL-4090 fix link...	commit \| commitdiff \| tree
2023-09-22	James Procter	JAL-4090 smaller associate PDB file panel image in...	commit \| commitdiff \| tree
2023-09-21	James Procter	JAL-4090 what’s new and additional help docs for JAL...	commit \| commitdiff \| tree
2023-09-21	James Procter	JAL-4090 JAL-4262 JAL-4265 release notes	commit \| commitdiff \| tree
2023-09-21	James Procter	JAL-1551 javadoc for mapUtils	commit \| commitdiff \| tree
2023-09-21	James Procter	JAL-3855 disable the AlphaFold DB entry in Sequence...	commit \| commitdiff \| tree
2023-09-21	James Procter	JAL-3858 JAL-3855 documentation for import and display...	commit \| commitdiff \| tree
2023-09-21	James Procter	Merge branch 'merge/JAL-4262+JAL-4265+JAL-4269+JAL...	commit \| commitdiff \| tree
2023-09-20	James Procter	JAL-4285 don’t say you are reporting warnings/errors...	commit \| commitdiff \| tree
2023-09-20	James Procter	JAL-4265 JAL-4286 reinstated explicit restoreSession...	commit \| commitdiff \| tree
2023-09-20	James Procter	JAL-4265 JAL-4267 added a ‘restoreSession’ StructureViewer...	commit \| commitdiff \| tree
2023-09-20	James Procter	JAL-4195 JAL-1069 JAL-4160 errors in Cache should go...	commit \| commitdiff \| tree
2023-09-20	James Procter	Merge branch 'reviews/merge/JAL-4262+JAL-4265+JAL-4269...	commit \| commitdiff \| tree
2023-09-20	James Procter	JAL-4217 - try to invokeAndWait on Desktop.closeAll...	commit \| commitdiff \| tree
2023-09-20	James Procter	JAL-4274 fix test failure message typo	commit \| commitdiff \| tree
2023-09-20	James Procter	JAL-4265 bail early when attempting to export a view...	commit \| commitdiff \| tree
2023-09-20	James Procter	JAL-4265 JAL-4267 allow injection of custom commands...	commit \| commitdiff \| tree
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