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Merge branch 'JAL-1954_pfamformatbroke' into develop
2015-10-30 Jim ProcterMerge branch 'JAL-1954_pfamformatbroke' into develop
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2015-10-30 Jim ProcterJAL-1954 rejigged PFAMFile to split on ‘\t’ if no space...
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2015-10-30 Jim ProcterJAL-1954 formatting
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2015-10-28 Jim ProcterJAL-1954 test PFAM import results in AlignmentI.hasValidSequ...
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2015-10-16 Jim ProcterJAL-1925 version change
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2015-10-16 Jim ProcterJAL-1925 update what's new and release notes
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2015-10-15 Jim ProcterJAL-1791 remove blanket sign of examples/*.jar
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2015-10-15 Jim ProcterJAL-1791 id rather than name attrib
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2015-10-15 Jim ProcterJAL-1791 sign the applet with/out timestamps
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2015-10-15 Jim ProcterJAL-1791 add explicit proxy for benefit of jalview...
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2015-10-15 Jim ProcterJAL-1791 fix ant target dependencies
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2015-10-15 Jim ProcterJAL-1791 make timestamping optional using -Dtimestamp
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2015-10-15 Jim ProcterJAL-1791 add jalview.tsaurl for specifying timestamp...
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2015-10-15 Jim ProcterJAL-1791 add jalview.tsaurl for specifying timestamp...
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2015-10-15 Jim ProcterMerge branch 'bug/JAL-1923_290b2_group_annots' into...
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2015-10-15 Jim ProcterJAL-1923 formatting
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2015-10-15 Jim ProcterJAL-1923 add groups to codon-complement and notify...
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2015-10-15 Jim ProcterJAL-1923 fix: don’t add group twice
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2015-10-08 Jim ProcterJAL-1684 updated fragment alignment for example and...
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2015-10-08 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2015-10-08 Jim ProcterJAL-1894 add licensing
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2015-10-08 Jim ProcterJAL-1894 update what's new
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2015-10-08 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2015-10-08 Jim ProcterJAL-1894 formatting
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2015-10-08 Jim ProcterJAL-1894 organise imports
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2015-10-07 Jim ProcterJAL-1894 source formatting
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2015-10-07 Jim ProcterJAL-1894 organise imports
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2015-10-07 Jim ProcterJAL-1894 update release date
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2015-10-07 Jim ProcterJAL-1912 formatting
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2015-10-07 Jim ProcterJAL-1912 javadoc for adjustForAlignment stating current...
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2015-10-07 Jim ProcterJAL-1912 efficiency: look up sequenceMapping once per...
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2015-10-07 Jim ProcterMerge branch 'features/JAL-1912_biojson-per-sequence...
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2015-10-05 Jim ProcterMerge branch 'develop' into features/JAL-1912_biojson...
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2015-10-05 Jim ProcterJAL-1894 note about menu option bugfix JAL-1865 JAL...
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2015-10-05 Jim ProcterJAL-1894 update release notes for JAL-1815 JAL-1860
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2015-10-05 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2015-10-05 Jim ProcterJAL-1684 trimmed proteins to just those sequences that...
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2015-10-02 Jim ProcterJAL-1900 JAL-1625 disable iconify button for internal...
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2015-10-01 Jim ProcterJAL-1894 release notes update and 6th October release...
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2015-09-30 Jim Procterfix for JAL-1883
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2015-09-22 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2015-09-22 Jim ProcterJAL-1894 update RELEASE for 2.9.0b1 release
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2015-09-18 Jim ProcterJAL-1889 wrong clean for buildTest!
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2015-09-18 Jim ProcterJAL-1270 JAL-1889 move the stevesoft test back into...
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2015-09-18 Jim ProcterJAL-1889 remove non-UTF8 characters so we can build...
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2015-09-18 Jim ProcterJAL-1888 updated documentation for unit testing in...
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2015-09-18 Jim ProcterJAL-1888 set verbosity and exclude the 'parallel' attribute...
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2015-09-18 Jim ProcterJAL-1888 JAL-1551 format XML file (2 spaces, no tabs...
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2015-09-18 Jim ProcterJAL-1888 compile tests to separate directory and pass...
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2015-09-18 Jim ProcterJAL-1888 documentation for testing target
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2015-09-18 Jim ProcterJAL-1888 property to specify which testng groups should...
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2015-09-16 Jim ProcterMerge branch 'JAL-1612_JAL-1439_JAL-1845_osx_icons_signing_i...
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2015-09-16 Jim ProcterJAL-1612 JAL-1439 JAL-1845 OSX Installers set Xdock...
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2015-09-11 Jim ProcterJAL-1884 add the JNLP template to jalview_jnlp_vm.jar
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2015-09-10 Jim ProcterJAL-1645 fix broken link in docs
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2015-09-10 Jim ProcterJAL-1645 reformat help html - 2 spaces indents, no...
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2015-09-10 Jim ProcterJAL-1645 licencing for help html
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2015-09-10 Jim ProcterJAL-1645 licencing for doc directory files
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2015-09-10 Jim ProcterJAL-1645 licencing for groovy files
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2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils
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2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
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2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
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2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
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2015-09-10 Jim ProcterJAL-1684 updated example to just a fragment of the...
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2015-09-10 Jim ProcterJAL-1645 add reference seq docs to index/etc
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2015-09-10 Jim ProcterJAL-1645 formatting and updated release date
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2015-09-10 Jim ProcterJAL-1645 formatting
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2015-09-10 Jim ProcterJAL-736 JAL-1645 brief documentation about physicochemical...
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2015-09-10 Jim ProcterMerge branch 'develop' into release/2_9_documentation
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2015-09-10 Jim ProcterJAL-1645 typo
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2015-09-10 Jim ProcterJAL-1645 JAL-1595 sort by RNA helices docs
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2015-09-10 Jim ProcterJAL-1645 more cross-links and fixing menu entries
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2015-09-10 Jim ProcterJAL-1645 links from whats New page
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2015-09-10 Jim ProcterJAL-1645 yet more documentation tweaks
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2015-09-10 Jim ProcterJAL-1370 correct i18n message for reference sequence...
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2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference...
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2015-09-10 Jim ProcterJAL-1370 mark Jpred query sequence as reference sequence
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2015-09-09 Jim ProcterJAL-1645 rejig annotation selection dialog box
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2015-09-09 Jim ProcterJAL-1645 rejig biojson/biojsmsa docs
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2015-09-09 Jim ProcterJAL-1645 documentation tweaks
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2015-09-09 Jim ProcterJAL-1645 rejig bioJSON, export and whats new
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2015-09-09 Jim ProcterJAL-1645 relocate developer info about BioJS MSA templates...
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2015-09-09 Jim ProcterJAL-1645 update 2.9 docs
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2015-09-09 Jim ProcterJAL-1645 JAL-1667 revised PDB sequence fetcher docs
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2015-09-09 Jim ProcterJAL-1645 update TOC for 2.9 what’s new
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2015-09-09 Jim ProcterJAL-1645 update release note link to v2.9
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2015-09-09 Jim ProcterJAL-1684 use Muscle protein alignment as guide for...
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2015-09-09 Jim ProcterMerge branch 'release/2_9_documentation' into develop
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2015-09-09 Jim ProcterJAL-1684 clarification of which alignment will be used...
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2015-09-09 Jim ProcterJAL-1684 aligned proteins and citation for for Estrogen...
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2015-09-09 Jim ProcterJAL-1645 formatting tree distance docs
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2015-09-09 Jim ProcterJAL-1483 more explicit description of feature similarity...
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2015-09-09 Jim ProcterJAL-1483 description of the sequence feature based...
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2015-09-08 Jim ProcterJAL-1645 Merge branch 'release/2_9_documentation' into...
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2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
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2015-09-08 Jim ProcterJAL-1645 defictionalising release notes
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2015-09-08 Jim ProcterJAL-1645 first stab at R2.9 “What’s new”
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2015-09-08 Jim ProcterJAL-1645 JAL-1701 fix up split frame docs and add a...
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2015-09-08 Jim ProcterJAL-1645 incorrect internal doc link
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2015-09-08 Jim ProcterJAL-1645 update appletParameters docs for 2.9
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