| 2017-02-07 |
gmungoc | JAL-2401 Lower Case Colour toggleable, help text added
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| 2017-02-07 |
gmungoc | JAL-2379 removed unused commented code
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| 2017-02-07 |
gmungoc | JAL-2397 flag provided for 2.10.1 PCA gap calculation...
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| 2017-02-07 |
gmungoc | JAL-2398 include 'compatibility mode' for C->R score...
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| 2017-02-07 |
gmungoc | JAL-2397 scripts to toggle 2.10.1 / 2.10.2 PCA calculation...
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| 2017-02-07 |
gmungoc | JAL-2397 PCA gap cost uses last column of score matrix
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| 2017-02-07 |
gmungoc | JAL-2398 corrected entry for C->R in Blosum62 matrix
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commit | commitdiff | tree |
| 2017-02-06 |
gmungoc | JAL-2379 computePairwiseScores() moved to ScoreMatrix
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| 2017-02-03 |
gmungoc | JAL-2379 'direct' pairwise score calculation for PCA...
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| 2017-02-01 |
gmungoc | JAL-2371 (slight!) simplification of isApplicableTo()
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commit | commitdiff | tree |
| 2017-02-01 |
gmungoc | JAL-2383 and Spanish!
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commit | commitdiff | tree |
| 2017-01-31 |
gmungoc | JAL-2371 commented code removed only
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commit | commitdiff | tree |
| 2017-01-31 |
gmungoc | JAL-2371 rename global/viewportColourScheme to residueShading
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| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPanel...
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commit | commitdiff | tree |
| 2017-01-27 |
gmungoc | JAL-2379 commented out code removed
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commit | commitdiff | tree |
| 2017-01-27 |
gmungoc | JAL-2371 CollectionColourScheme renamed ResidueShader...
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commit | commitdiff | tree |
| 2017-01-27 |
gmungoc | JAL-2099 belated unit test
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| 2017-01-27 |
gmungoc | JAL-2360 JAL-2371 updates from review CR-JAL-1
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2360 corrected comment
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2360 C is Pink with consensus > 85% (not 100%)
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| 2017-01-26 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2344 test fix and code tidy for review comments
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2380 code tidy after review
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commit | commitdiff | tree |
| 2017-01-25 |
gmungoc | JAL-2344 push Cache.getProperty("LAST_DIRECTORY") inside...
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commit | commitdiff | tree |
| 2017-01-23 |
gmungoc | JAL-2379 made SparseMatrix.divide() so as to exactly...
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commit | commitdiff | tree |
| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refactoring for
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commit | commitdiff | tree |
| 2017-01-23 |
gmungoc | JAL-2386 simplify changeColour (doesn't change colour...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2385 tweak to applet 'switch colour slider context'
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2385 update slider settings when switching slider...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 fixup from last merge
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 check for null, spelling
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 make popup colour menu order and wording consistent
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commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 restore group conservation slider setting...
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| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-19 |
gmungoc | JAL-2383 restore PID colour threshold from project...
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commit | commitdiff | tree |
| 2017-01-19 |
gmungoc | JAL-2370 unit tests for extracted ColumnSelection.stretchGroup()
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commit | commitdiff | tree |
| 2017-01-19 |
gmungoc | JAL-2370 corrected applet mouse drag, refactored into...
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commit | commitdiff | tree |
| 2017-01-18 |
gmungoc | JAL-2379 more realistic matrices for unit tests
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commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | JAL-1933 update threshold on focus lost in text field
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commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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| 2017-01-17 |
gmungoc | JAL-2370 fix bug when hiding a range including two...
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commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | JAL-2379 use SparseMatrix for encoded sequences, tidy...
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commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | JAL-2379 SparseMatrix alternative to Matrix, both MatrixI
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commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | JAL-2379 SparseDoubleArray added (for use by SparseMatrix)
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commit | commitdiff | tree |
| 2017-01-16 |
gmungoc | JAL-1270 class renamed
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commit | commitdiff | tree |
| 2017-01-16 |
gmungoc | JAL-2380 fix Matrix.postMultiply()
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commit | commitdiff | tree |
| 2017-01-16 |
gmungoc | JAL-1270 tweaks to AlignmentGenerator / client class
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commit | commitdiff | tree |
| 2017-01-12 |
gmungoc | JAL-1270 renamed AlignmentGenerator, and added peptide...
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commit | commitdiff | tree |
| 2017-01-12 |
gmungoc | JAL-2379 null references to PCA model when panel is...
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commit | commitdiff | tree |
| 2017-01-12 |
gmungoc | JAL-2344 now flagging formats as 'identifiable' instead...
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commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 separated AlignmentFileI into AlignmentFileReaderI,
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commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 groovy script that registers a new file format
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commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 FileFormats singleton for formats, FileFormatI...
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commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 addSequence() method added to support Groovy...
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commit | commitdiff | tree |
| 2017-01-10 |
gmungoc | JAL-2377 avoid infinite loop formatting 1.0E-310
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commit | commitdiff | tree |
| 2017-01-09 |
gmungoc | JAL-2371 pull up isNucleotide to SequenceCollectionI
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commit | commitdiff | tree |
| 2017-01-09 |
gmungoc | JAL-2371 remove ColourSchemeI.findColour(c), pure interface...
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | JAL-2371 slight simplification of findColour overrides
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | JAL-2371 correct Clustal, Blosum, PID colouring of...
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | JAL-2360 findColour() with no args removed from ColourSchemeI
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2374 unit test for (modified) Alignment.findGroup()
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2374 fix popup out by one and multiple groups bugs
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2371 add test for toggling ignore gaps with PID...
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2373 set state of Above PID, By Conservation in...
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commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2371 tests added
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commit | commitdiff | tree |
| 2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI
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commit | commitdiff | tree |
| 2016-12-29 |
gmungoc | JAL-2630 first pass groovy colour scheme (with slight...
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commit | commitdiff | tree |
| 2016-12-23 |
gmungoc | JAL-2360 removed UserDefinedColours.userColourSchemes
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commit | commitdiff | tree |
| 2016-12-23 |
gmungoc | JAL-2120 JAL-2360 remove obsolete PDBViewer
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commit | commitdiff | tree |
| 2016-12-22 |
gmungoc | JAL-2360 fix bug that prematurely created a SequenceGroup
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commit | commitdiff | tree |
| 2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper...
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 set new/loaded colour scheme name correctly
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 simplified code to create a new colour scheme
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 added a table to show score colours
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 ColourMenuHelper now builds and selects items...
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 comment only
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 tidy up, simplify isApplicableTo test
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 no RNAHelices colouring for groups
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2361 Blosum is enabled for peptide
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-1421 add types to Map
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 fix incorrect action on Cancel user defined...
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 tidy spelling and file contents order only
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commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 Javadoc and test cases for findAnnotation
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commit | commitdiff | tree |
| 2016-12-20 |
gmungoc | JAL-2360 testRegisterColourScheme to demonstrate a...
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commit | commitdiff | tree |
| 2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignFrame...
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commit | commitdiff | tree |
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