JAL-2344 addSequence() method added to support Groovy parser

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index 4de510a..cc5e816 100755 (executable)
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -416,4 +416,8 @@ public abstract class AlignFile extends FileParse implements AlignmentFileI
     }
   }
 
+  protected void addSequence(SequenceI seq)
+  {
+    seqs.add(seq);
+  }
 }