| 2012-05-30 |
jprocter | JAL-1109 JAL-1065 resolve t-coffee score scheme by...
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commit | commitdiff | tree |
| 2012-05-30 |
jprocter | updated schema to store and recover belowAlignment...
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commit | commitdiff | tree |
| 2012-05-30 |
jprocter | JAL-1114 - refactor methods handling Vectors and Hashtables...
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commit | commitdiff | tree |
| 2012-05-30 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-05-30 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | TODO: JAL-1108
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | JAL-1078 - removed 'Load Score File' menu item and...
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | JAL-1065 per sequence and per-alignment scores added...
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | JAL-1065 - ensure null entries in annotation row so...
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | todo: JAL-1105
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | todo: JAL-1108
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | ensure annotation isn't added twice - note - this could...
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | JAL-1107 - documentation explaining '*' and '+' in...
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commit | commitdiff | tree |
| 2012-05-24 |
jprocter | patch for occasional NPE when applet is quit
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-1078 - extend applet cut'n'paste features/annotation...
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-1067 report any warning messages to user
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | TODO for JAL-976
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | todo for JAL-1106
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-1066,JAL-1068,JAL-961 - use alignment annotation...
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-1067, JAL-1105 - refactor parser to fit Jalview...
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-961 - annotatable datamodel objects can be queried...
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-1102 todos and status updates when data is added
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | todo JAL-1104 : functions to refactor
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | todo: blocked by JAL-1104
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commit | commitdiff | tree |
| 2012-05-23 |
jprocter | JAL-958 - ensure logo is rendered even if consensus...
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commit | commitdiff | tree |
| 2012-05-22 |
jprocter | update the copy constructor
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commit | commitdiff | tree |
| 2012-05-22 |
jprocter | JAL-1065,JAL-1066 propagated notification of colourscheme...
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commit | commitdiff | tree |
| 2012-05-22 |
jprocter | JAL-1065,JAL-1066 - propagated 863467bf6c59c0bc5368c8f3a03d9...
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commit | commitdiff | tree |
| 2012-05-22 |
jprocter | Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
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commit | commitdiff | tree |
| 2012-05-16 |
jprocter | warning dialog - fixes JAL-1099
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commit | commitdiff | tree |
| 2012-05-16 |
jprocter | fixed JAL-1086: pass column index so colourscheme profile...
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commit | commitdiff | tree |
| 2012-05-16 |
jprocter | JAL-958 - don't try to draw all zero profiles
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commit | commitdiff | tree |
| 2012-05-16 |
jprocter | JAL-958 JAL-1086 formatting and remove old code
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | pack before displaying splashscreen to ensure its preferred...
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | JAL-1097 - ensure replace comma for semicolon always...
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | Merge branch 'JAL-972-jdas' into develop
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | JAL-1075
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | JAL-1061,JAL-1075 - first pass at implementing sequence...
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | clean up old commented code
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | JAL-1095 - todo
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commit | commitdiff | tree |
| 2012-05-14 |
jprocter | javadoc
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commit | commitdiff | tree |
| 2012-05-11 |
jprocter | JAL-972 workaround for working out source URL for pre...
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commit | commitdiff | tree |
| 2012-05-11 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-05-11 |
jprocter | JAL-972 migration from dasobert to jdas registry URLs
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commit | commitdiff | tree |
| 2012-05-11 |
jprocter | JAL-972 local do not have a coordsys element with source...
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commit | commitdiff | tree |
| 2012-05-11 |
jprocter | JAL-424 TODO: new method signature for local source...
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commit | commitdiff | tree |
| 2012-05-10 |
jprocter | JAL-1085 - ensure sequence fetching client waits around...
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commit | commitdiff | tree |
| 2012-05-10 |
jprocter | JAL-972 JAL-1084 propagate reference to local authentication...
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commit | commitdiff | tree |
| 2012-05-10 |
jprocter | JAL-1083 - graceful failover to single ID query mode...
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commit | commitdiff | tree |
| 2012-05-10 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-05-10 |
jprocter | JAL-1083 graceful failover to one ID per sequences...
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commit | commitdiff | tree |
| 2012-05-10 |
jprocter | JAL-1075 better layout and info box for source browser
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commit | commitdiff | tree |
| 2012-05-01 |
jprocter | JAL-1075 tweak layout and test display for tree based...
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commit | commitdiff | tree |
| 2012-04-24 |
jprocter | JAL-1075, JAL-1061, JAL-1064 - introduced second tier...
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commit | commitdiff | tree |
| 2012-04-24 |
jprocter | JAL-1064 sequence database sources are stored and retrieved...
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commit | commitdiff | tree |
| 2012-04-24 |
jprocter | JAL-972 correct das registry default URL (JDAS automatically...
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commit | commitdiff | tree |
| 2012-04-24 |
jprocter | JAL-972 - test to distinguish sources based on age...
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commit | commitdiff | tree |
| 2012-04-24 |
jprocter | JAL-1074 fix - missing tag indicating alignments are...
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commit | commitdiff | tree |
| 2012-04-20 |
jprocter | JAL-972, JAL-1072 new default dasregistry.org registry...
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commit | commitdiff | tree |
| 2012-04-20 |
jprocter | JAL-1064 JAL-671 - add tree based database dialog as...
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commit | commitdiff | tree |
| 2012-04-20 |
jprocter | JAL-1064 - hack to create menu item label for each...
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commit | commitdiff | tree |
| 2012-04-20 |
jprocter | JAL-1064 - refactor to iterate over many sources associated...
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commit | commitdiff | tree |
| 2012-04-20 |
jprocter | JAL-972 - correct name when constructing db-source...
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commit | commitdiff | tree |
| 2012-04-20 |
jprocter | (JAL-1071) hacked the square matrix that stores the...
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commit | commitdiff | tree |
| 2012-04-11 |
jprocter | dialog for browsing and selecting datasources hierarchically...
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commit | commitdiff | tree |
| 2012-03-30 |
jprocter | JAL-1062 - recognise and split off the range qualifier...
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commit | commitdiff | tree |
| 2012-03-30 |
jprocter | (JAL-972) format tweak for source information box
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commit | commitdiff | tree |
| 2012-03-30 |
jprocter | Merge branch 'JAL-972-dasobert-to-jdas' into JAL-972...
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commit | commitdiff | tree |
| 2012-03-30 |
jprocter | (JAL-972) jdas latest build
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commit | commitdiff | tree |
| 2012-03-30 |
jprocter | logic bug
Signed-off-by: jprocter <jprocter@compbio.dundee.ac.uk>
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commit | commitdiff | tree |
| 2012-03-28 |
jprocter | JAL-893 JAL-842 - updated VARNA - fix typo in InstallAnywher...
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commit | commitdiff | tree |
| 2012-03-28 |
jprocter | Merge branch 'JAL-976_jabaws2supp' into develop
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commit | commitdiff | tree |
| 2012-03-28 |
jprocter | JAL-1060 - prototype GUI with traffic light coding...
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commit | commitdiff | tree |
| 2012-03-28 |
jprocter | JAL-1060 - record which services are invalid, valid...
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commit | commitdiff | tree |
| 2012-03-27 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-03-27 |
jprocter | JAL-976 - tweak web services gui so empty menus don...
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commit | commitdiff | tree |
| 2012-03-27 |
jprocter | (JAL-976) - consistent ordering of services according...
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commit | commitdiff | tree |
| 2012-03-27 |
jprocter | JAL-976 - hack to provide consistent ordering of JABAWS2...
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commit | commitdiff | tree |
| 2012-03-27 |
jprocter | (JAL-976) refactor JABAWS1 list
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commit | commitdiff | tree |
| 2012-03-05 |
jprocter | (JAL-942) comment out non-functional buttons in VARNA
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commit | commitdiff | tree |
| 2012-03-05 |
jprocter | (JAL-942) clearer view structure menu entry
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commit | commitdiff | tree |
| 2012-03-05 |
jprocter | JAL-942 - sensible name on window
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commit | commitdiff | tree |
| 2012-03-05 |
jprocter | JAL-942 - make sure rna structures get a sensible name
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commit | commitdiff | tree |
| 2012-03-02 |
jprocter | (JAL-1052) todo for output of RNA consensus lines
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commit | commitdiff | tree |
| 2012-03-02 |
jprocter | (JAL-1052) basic consensus line parsing to rna structure...
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commit | commitdiff | tree |
| 2012-03-02 |
jprocter | (JAL-1052) make RNA secondary structure string parsing...
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commit | commitdiff | tree |
| 2012-03-02 |
jprocter | formatting
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commit | commitdiff | tree |
| 2012-03-02 |
jprocter | (JAL-942) more tweaking mapping between 2-struct and...
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commit | commitdiff | tree |
| 2012-03-02 |
jprocter | (JAL-842) debug mouseover for sequences that don't...
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commit | commitdiff | tree |
| 2012-03-02 |
jprocter | (JAL-842) todo
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commit | commitdiff | tree |
| 2012-03-02 |
jprocter | remove unnecessary method
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commit | commitdiff | tree |
| 2012-03-02 |
jprocter | efficiency, and ensure mouseover messages originating...
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commit | commitdiff | tree |
| 2012-03-01 |
jprocter | (JAL-842) ensure deletions are accounted for when highlighti...
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commit | commitdiff | tree |
| 2012-03-01 |
jprocter | (JAL-893) update to VARNAv3.9-dev version
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commit | commitdiff | tree |
| 2012-03-01 |
jprocter | Merge branch 'Release_2_7_Branch' into develop
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commit | commitdiff | tree |
| 2012-03-01 |
jprocter | debug local source management buttons and formatting
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commit | commitdiff | tree |
| 2012-03-01 |
jprocter | revised version of Jdas with simpler connectionPropertyProvi...
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commit | commitdiff | tree |
| 2012-02-29 |
jprocter | update to latest build
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commit | commitdiff | tree |
| 2012-02-29 |
jprocter | move from dasobert to jdas multithreaded feature fetching...
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commit | commitdiff | tree |
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