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JAL-1780 just a spelling change
2015-08-10
Jim Procter
JAL-1645 updated final release date for version 2.9
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2015-08-10
Jim Procter
Merge branch 'release/2_9_documentation' into develop
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2015-08-10
Jim Procter
JAL-736 relocate group associated conservation symbols...
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2015-08-10
Jim Procter
JAL-736 source formatting
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2015-08-05
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2015-08-05
Jim Procter
JAL-1821 formatting
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2015-08-05
Jim Procter
JAL-1821 launch the structure view in a separate thread...
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2015-08-05
Jim Procter
JAL-1822 create dataset sequences if they aren’t already...
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2015-08-05
Jim Procter
JAL-1821 JAL-1759 make sure we wait around until the...
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2015-08-05
Jim Procter
JAL-1821 patch for completeness - first model number...
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2015-08-03
Jim Procter
JAL-1821 JAL-1759 reinstate rotation speed configuration...
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2015-08-03
Jim Procter
JAL-1821 JAL-1759 updated Jmol has different model...
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2015-08-03
Jim Procter
JAL-1821 avoid race condition when multiple structures...
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2015-07-23
Jim Procter
Merge branch 'features/JAL-1759jmolUpdate' into develop
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2015-07-23
Jim Procter
JAL-1759 formatting
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2015-07-23
Jim Procter
JAL-1759 reinstate changes from bdfde6ef989da0702cef90f03858...
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2015-07-23
Jim Procter
JAL-1759 formatting
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2015-07-23
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2015-07-23
Jim Procter
Merge branch 'task/JAL-1794_jettyExamplesServer' into...
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2015-07-23
Jim Procter
Merge branch 'bug/JAL-1819_isNaN' into develop
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2015-07-23
Jim Procter
JAL-1819 commented out debugging message to stderr
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2015-07-23
Jim Procter
JAL-1551 JAL-1819 formatting/imports
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2015-07-23
Jim Procter
JAL-1819 use Float.isNaN() to check for NaNs!
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2015-07-22
Jim Procter
JAL-1805 add group spec to the BeforeMethod setup ...
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2015-07-22
Jim Procter
JAL-1782 added summary test report for Release_2_9_Branch...
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2015-07-21
Jim Procter
Merge branch 'ismb/2015_demo' into develop
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2015-07-16
Jim Procter
revision for JAL-1749 - ensure view 2D structure menu...
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2015-07-16
Jim Procter
fix for JAL-1776 renamed popup menu entry
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2015-06-30
Jim Procter
JAL-1682 JAL-1645 remove references to 2.8.3
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2015-06-30
Jim Procter
JAL-1645 update release history for 2.8.2b1
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2015-06-25
Jim Procter
JAL-1794 simple file server class - configured for...
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2015-06-25
Jim Procter
JAL-1691 avoid NPE when original split frame has been...
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2015-06-25
Jim Procter
JAL-1780 JAL-653 JAL-1892 brackets in wrong place broke...
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2015-06-24
Jim Procter
Merge branch 'features/JAL-1370_patchshowunconserved...
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2015-06-24
Jim Procter
JAL-1790 fix: javac.source=1.7 and javac.target=1.7...
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2015-06-24
Jim Procter
JAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation
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2015-06-24
Jim Procter
Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
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2015-06-23
Jim Procter
JAL-1780 JAL-653 jim forgot to put the conditional...
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2015-06-23
Jim Procter
JAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refactored...
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2015-06-22
Jim Procter
JAL-1270 fix logic in stockholm test allowing annotation...
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2015-06-22
Jim Procter
JAL-653 JAL-1780 JAL-1140 added RNAML example alignment...
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2015-06-22
Jim Procter
JAL-653 JAL-1780 dropped unnecessary refs
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2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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2015-06-22
Jim Procter
JAL-653 JAL-1780 reorder imports
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2015-06-19
Jim Procter
JAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfile...
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2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
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2015-06-19
Jim Procter
JAL-653 JAL-1780 minimise call rate now av.hasHiddenRows...
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2015-06-19
Jim Procter
JAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
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2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
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2015-06-18
Jim Procter
JAL-653 patch broken test code - test still not passing
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2015-06-18
Jim Procter
JAL-653 JAL-1780 JAL-1543 javadoc and comment about...
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2015-06-18
Jim Procter
JAL-653 JAL-1780 javadoc for FeatureRenderer prior...
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2015-06-18
Jim Procter
JAL-1780 JAL-653 moved AlignExportSettings reference...
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2015-06-17
Jim Procter
JAL-1784 minimise data duplication, and report out...
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2015-06-17
Jim Procter
JAL-1784 refactor parse method to directly parse FileParser...
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2015-06-17
Jim Procter
Merge branch 'features/JAL-653_gffalignments' into...
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2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
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2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-1780_export...
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2015-06-17
Jim Procter
JAL-1783 add java 1.7 and 1.8 class numbers
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2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-1780_export...
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2015-06-15
Jim Procter
Merge branch 'bug/JAL-1775' into develop
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2015-06-15
Jim Procter
JAL-1665 patch for regression: failing jalview.ws.jabaws...
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2015-06-15
Jim Procter
JAL-1775 patch for regression from Anne Menard’s pseudo...
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2015-06-15
Jim Procter
Merge branch 'bug/JAL-1775' into develop
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2015-06-15
Jim Procter
JAL-1775 patch regression bug when displayChar is null...
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2015-06-15
Jim Procter
Merge branch 'bug/JAL-1775' into develop
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2015-06-15
Jim Procter
fix for JAL-1775 (and reorganise imports)
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2015-06-15
Jim Procter
Merge branch 'bug/JAL-1775' into develop
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2015-06-15
Jim Procter
JAL-1775 test demonstrating bug
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2015-06-15
Jim Procter
JAL-1775 FileLoader javadoc
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2015-06-15
Jim Procter
JAL-1775 fix regression from commit 70f9c4700f20a8fa57ed7eb9...
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2015-06-15
Jim Procter
Merge branch 'develop' into bug/JAL-1775
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2015-06-15
Jim Procter
JAL-1775 fix broken test due to missing file (RF0031_unfolded).
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2015-06-10
Jim Procter
JAL-1764 add structure view type attribute to project...
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2015-06-07
Jim Procter
JAL-429 remove pointless code from phylip parser
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2015-06-07
Jim Procter
JAL-653 test for GFF file recognition and alignment...
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2015-06-07
Jim Procter
JAL-653 GFF recognition for identifyFile and format...
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2015-06-07
Jim Procter
JAL-653 basic GFF3 alignment import wrapper class
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2015-06-06
Jim Procter
JAL-653 make sure dummy sequences created during GFF...
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2015-06-06
Jim Procter
JAL-653 first stab at parsing GFF3 pragmas to support...
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2015-06-06
Jim Procter
JAL-653 gff version number field
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2015-06-06
Jim Procter
JAL-653 test and testdata for importing GFF3 file with...
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2015-06-06
Jim Procter
JAL-653 missing imports after rebase
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2015-06-06
Jim Procter
JAL-653 test for SequenceDummy methods
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2015-06-06
Jim Procter
JAL-653 allow a dummy sequence to take on attributes...
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2015-06-05
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
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2015-06-05
Jim Procter
JAL-653 abstract sequence model to support file backed...
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2015-06-05
Jim Procter
JAL-653 refactor sequence interface to separate concrete...
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2015-06-05
Jim Procter
JAL-845 jim @mungo: should this be in a package local...
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2015-06-05
Jim Procter
JAL-1551 formatting
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2015-06-05
Jim Procter
JAL-653 set the warningMessage for the file source...
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2015-06-05
Jim Procter
JAL-653 GFF attributes parsing mechanism, with first...
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2015-06-05
Jim Procter
JAL-653 trim initial tab in sequence feature ATTRIBUTES
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2015-06-05
Jim Procter
JAL-653 allow dummy sequences to be created if a sequence...
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2015-06-05
Jim Procter
JAL-1551 formatting
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2015-06-05
Jim Procter
JAL-653 convenience method to resolve strand attribute...
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2015-06-05
Jim Procter
JAL-1115 JAL-653 partial introduction of List interface...
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2015-06-05
Jim Procter
JAL-653 JAL-966 TODO and avoid NPE when desktop instance...
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2015-06-05
Jim Procter
JAL-653 codon frames go on the dataset
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2015-06-05
Jim Procter
JAL-653 refactored exonerate full output to separate...
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