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2015-06-24	Jim Procter	JAL-1782 refactored JAL-1766 JAL-653 tests to TestNG	commit \| commitdiff \| tree
2015-06-23	Jim Procter	Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...	commit \| commitdiff \| tree
2015-06-23	Jim Procter	JAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refactored...	commit \| commitdiff \| tree
2015-06-22	Jim Procter	JAL-1270 fix logic in stockholm test allowing annotation...	commit \| commitdiff \| tree
2015-06-22	Jim Procter	JAL-653 JAL-1780 JAL-1140 added RNAML example alignment...	commit \| commitdiff \| tree
2015-06-22	Jim Procter	JAL-653 JAL-1780 dropped unnecessary refs	commit \| commitdiff \| tree
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	commit \| commitdiff \| tree
2015-06-22	Jim Procter	JAL-653 JAL-1780 reorder imports	commit \| commitdiff \| tree
2015-06-19	Jim Procter	JAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfile...	commit \| commitdiff \| tree
2015-06-19	Jim Procter	JAL-1780 JAL-653 organise imports	commit \| commitdiff \| tree
2015-06-19	Jim Procter	JAL-653 JAL-1780 minimise call rate now av.hasHiddenRows...	commit \| commitdiff \| tree
2015-06-19	Jim Procter	JAL-653 JAL-1780 dropped av.setHasHiddenRows() and...	commit \| commitdiff \| tree
2015-06-19	Jim Procter	JAL-1780 JAL-653 organise imports	commit \| commitdiff \| tree
2015-06-18	Jim Procter	JAL-653 patch broken test code - test still not passing	commit \| commitdiff \| tree
2015-06-18	Jim Procter	JAL-653 JAL-1780 JAL-1543 javadoc and comment about...	commit \| commitdiff \| tree
2015-06-18	Jim Procter	JAL-653 JAL-1780 javadoc for FeatureRenderer prior...	commit \| commitdiff \| tree
2015-06-18	Jim Procter	JAL-1780 JAL-653 moved AlignExportSettings reference...	commit \| commitdiff \| tree
2015-06-17	Jim Procter	JAL-1784 minimise data duplication, and report out...	commit \| commitdiff \| tree
2015-06-17	Jim Procter	JAL-1784 refactor parse method to directly parse FileParser...	commit \| commitdiff \| tree
2015-06-17	Jim Procter	Merge branch 'features/JAL-653_gffalignments' into...	commit \| commitdiff \| tree
2015-06-17	Jim Procter	Merge branch 'features/JAL-653_gffalignments' into...	commit \| commitdiff \| tree
2015-06-17	Jim Procter	Merge branch 'develop' into features/JAL-653_gffalignments	commit \| commitdiff \| tree
2015-06-17	Jim Procter	Merge branch 'develop' into features/JAL-1780_export...	commit \| commitdiff \| tree
2015-06-17	Jim Procter	JAL-1783 add java 1.7 and 1.8 class numbers	commit \| commitdiff \| tree
2015-06-17	Jim Procter	Merge branch 'develop' into features/JAL-1780_export...	commit \| commitdiff \| tree
2015-06-15	Jim Procter	Merge branch 'bug/JAL-1775' into develop	commit \| commitdiff \| tree
2015-06-15	Jim Procter	JAL-1665 patch for regression: failing jalview.ws.jabaws...	commit \| commitdiff \| tree
2015-06-15	Jim Procter	JAL-1775 patch for regression from Anne Menard’s pseudo...	commit \| commitdiff \| tree
2015-06-15	Jim Procter	Merge branch 'bug/JAL-1775' into develop	commit \| commitdiff \| tree
2015-06-15	Jim Procter	JAL-1775 patch regression bug when displayChar is null...	commit \| commitdiff \| tree
2015-06-15	Jim Procter	Merge branch 'bug/JAL-1775' into develop	commit \| commitdiff \| tree
2015-06-15	Jim Procter	fix for JAL-1775 (and reorganise imports)	commit \| commitdiff \| tree
2015-06-15	Jim Procter	Merge branch 'bug/JAL-1775' into develop	commit \| commitdiff \| tree
2015-06-15	Jim Procter	JAL-1775 test demonstrating bug	commit \| commitdiff \| tree
2015-06-15	Jim Procter	JAL-1775 FileLoader javadoc	commit \| commitdiff \| tree
2015-06-15	Jim Procter	JAL-1775 fix regression from commit 70f9c4700f20a8fa57ed7eb9...	commit \| commitdiff \| tree
2015-06-15	Jim Procter	Merge branch 'develop' into bug/JAL-1775	commit \| commitdiff \| tree
2015-06-15	Jim Procter	JAL-1775 fix broken test due to missing file (RF0031_unfolded).	commit \| commitdiff \| tree
2015-06-12	Jim Procter	JAL-1766 update HTSJDK to Version 1.133	commit \| commitdiff \| tree
2015-06-11	Jim Procter	JAL-653 tidy comments	commit \| commitdiff \| tree
2015-06-10	Jim Procter	JAL-1764 add structure view type attribute to project...	commit \| commitdiff \| tree
2015-06-08	Jim Procter	JAL-1766 basic test to retrieve named sequences from...	commit \| commitdiff \| tree
2015-06-08	Jim Procter	JAL-1766 test and buggy implementation of fasta index...	commit \| commitdiff \| tree
2015-06-08	Jim Procter	JAL-1766 added a snapshot build of the htsjdk	commit \| commitdiff \| tree
2015-06-07	Jim Procter	JAL-429 remove pointless code from phylip parser	commit \| commitdiff \| tree
2015-06-07	Jim Procter	JAL-653 test for GFF file recognition and alignment...	commit \| commitdiff \| tree
2015-06-07	Jim Procter	JAL-653 GFF recognition for identifyFile and format...	commit \| commitdiff \| tree
2015-06-07	Jim Procter	JAL-653 basic GFF3 alignment import wrapper class	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 make sure dummy sequences created during GFF...	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 first stab at parsing GFF3 pragmas to support...	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 gff version number field	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 test and testdata for importing GFF3 file with...	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 missing imports after rebase	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 test for SequenceDummy methods	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 allow a dummy sequence to take on attributes...	commit \| commitdiff \| tree
2015-06-05	Jim Procter	Merge branch 'develop' into features/JAL-653_gffalignments	commit \| commitdiff \| tree
2015-06-05	Jim Procter	JAL-653 abstract sequence model to support file backed...	commit \| commitdiff \| tree
2015-05-29	Jim Procter	Merge branch 'JAL-1755_npe_groupconsensus' into develop	commit \| commitdiff \| tree
2015-05-29	Jim Procter	JAL-1755 fix for NPE when setting up temporary variables	commit \| commitdiff \| tree
2015-05-07	Jim Procter	JAL-1731 fix JPred4 citation in legacy client code	commit \| commitdiff \| tree
2015-05-07	Jim Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2015-05-07	Jim Procter	JAL-1601 migrated the JABAWS 2.1 jpred burial representation...	commit \| commitdiff \| tree
2015-04-27	Jim Procter	JAL-1645 Release_2_9 branch build tag	commit \| commitdiff \| tree
2014-10-23	Jim Procter	Merge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch	commit \| commitdiff \| tree
2014-10-23	Jim Procter	Merge branch 'hotfix/JAL-1521' into develop	commit \| commitdiff \| tree

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