| 2017-02-17 |
gmungoc | JAL-2403 extract method refactoring of FeatureScoreModel...
|
commit | commitdiff | tree |
| 2017-02-17 |
gmungoc | JAL-2403 constants for "NJ", "AV"
|
commit | commitdiff | tree |
| 2017-02-14 |
gmungoc | JAL-2393 example (unvalidated) blosum80 matrix to play...
|
commit | commitdiff | tree |
| 2017-02-14 |
gmungoc | Parsing moved to (new) ScoreMatrixFile, drag and drop...
|
commit | commitdiff | tree |
| 2017-02-13 |
gmungoc | JAL-2416 allow alphabet symbol (optional) in first...
|
commit | commitdiff | tree |
| 2017-02-13 |
gmungoc | JAL-1632 JAL-2416 load score matrices from file, as...
|
commit | commitdiff | tree |
| 2017-02-13 |
gmungoc | JAL-1632 first cut of Tree chooser dialog and ScoreModels...
|
commit | commitdiff | tree |
| 2017-02-10 |
gmungoc | JAL-2371 small move of code, typo correction
|
commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2401 tweaked button text, added Spanish
|
commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2401 change 'Lower Case Colour' to checkbox with...
|
commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2371 no test for lower case consensus as not expected...
|
commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2371 ensure some colour scheme (may be None) is...
|
commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2371 skip upper-casing consensus as it already is
|
commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2405 check for circular reference in SequenceGroup...
|
commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2405 set initial selection group alignment context
|
commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2405 enable nucleotide/peptide colour schemes in...
|
commit | commitdiff | tree |
| 2017-02-08 |
gmungoc | JAL-2405 set context on selection group for tailored...
|
commit | commitdiff | tree |
| 2017-02-08 |
gmungoc | JAL-2401 fix for NPE on selectedButtons, tweak for...
|
commit | commitdiff | tree |
| 2017-02-07 |
gmungoc | JAL-2401 Lower Case Colour toggleable, help text added
|
commit | commitdiff | tree |
| 2017-02-01 |
gmungoc | JAL-2371 (slight!) simplification of isApplicableTo()
|
commit | commitdiff | tree |
| 2017-02-01 |
gmungoc | JAL-2383 and Spanish!
|
commit | commitdiff | tree |
| 2017-01-31 |
gmungoc | JAL-2371 commented code removed only
|
commit | commitdiff | tree |
| 2017-01-31 |
gmungoc | JAL-2371 rename global/viewportColourScheme to residueShading
|
commit | commitdiff | tree |
| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPanel...
|
commit | commitdiff | tree |
| 2017-01-27 |
gmungoc | JAL-2371 CollectionColourScheme renamed ResidueShader...
|
commit | commitdiff | tree |
| 2017-01-27 |
gmungoc | JAL-2099 belated unit test
|
commit | commitdiff | tree |
| 2017-01-27 |
gmungoc | JAL-2360 JAL-2371 updates from review CR-JAL-1
|
commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2360 corrected comment
|
commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2360 C is Pink with consensus > 85% (not 100%)
|
commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
|
commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
|
commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2344 test fix and code tidy for review comments
|
commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2380 code tidy after review
|
commit | commitdiff | tree |
| 2017-01-25 |
gmungoc | JAL-2344 push Cache.getProperty("LAST_DIRECTORY") inside...
|
commit | commitdiff | tree |
| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refactoring for
|
commit | commitdiff | tree |
| 2017-01-23 |
gmungoc | JAL-2386 simplify changeColour (doesn't change colour...
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2385 tweak to applet 'switch colour slider context'
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2385 update slider settings when switching slider...
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 fixup from last merge
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 check for null, spelling
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 make popup colour menu order and wording consistent
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | JAL-2383 restore group conservation slider setting...
|
commit | commitdiff | tree |
| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
|
commit | commitdiff | tree |
| 2017-01-19 |
gmungoc | JAL-2383 restore PID colour threshold from project...
|
commit | commitdiff | tree |
| 2017-01-19 |
gmungoc | JAL-2370 unit tests for extracted ColumnSelection.stretchGroup()
|
commit | commitdiff | tree |
| 2017-01-19 |
gmungoc | JAL-2370 corrected applet mouse drag, refactored into...
|
commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | JAL-2370 fix bug when hiding a range including two...
|
commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
|
commit | commitdiff | tree |
| 2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
|
commit | commitdiff | tree |
| 2017-01-16 |
gmungoc | JAL-1270 class renamed
|
commit | commitdiff | tree |
| 2017-01-16 |
gmungoc | JAL-2380 fix Matrix.postMultiply()
|
commit | commitdiff | tree |
| 2017-01-16 |
gmungoc | JAL-1270 tweaks to AlignmentGenerator / client class
|
commit | commitdiff | tree |
| 2017-01-12 |
gmungoc | JAL-1270 renamed AlignmentGenerator, and added peptide...
|
commit | commitdiff | tree |
| 2017-01-12 |
gmungoc | JAL-2379 null references to PCA model when panel is...
|
commit | commitdiff | tree |
| 2017-01-12 |
gmungoc | JAL-2344 now flagging formats as 'identifiable' instead...
|
commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 separated AlignmentFileI into AlignmentFileReaderI,
|
commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 groovy script that registers a new file format
|
commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 FileFormats singleton for formats, FileFormatI...
|
commit | commitdiff | tree |
| 2017-01-11 |
gmungoc | JAL-2344 addSequence() method added to support Groovy...
|
commit | commitdiff | tree |
| 2017-01-10 |
gmungoc | JAL-2377 avoid infinite loop formatting 1.0E-310
|
commit | commitdiff | tree |
| 2017-01-09 |
gmungoc | JAL-2371 pull up isNucleotide to SequenceCollectionI
|
commit | commitdiff | tree |
| 2017-01-09 |
gmungoc | JAL-2371 remove ColourSchemeI.findColour(c), pure interface...
|
commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | JAL-2371 slight simplification of findColour overrides
|
commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | JAL-2371 correct Clustal, Blosum, PID colouring of...
|
commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
|
commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | JAL-2360 findColour() with no args removed from ColourSchemeI
|
commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
|
commit | commitdiff | tree |
| 2017-01-06 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
|
commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2374 unit test for (modified) Alignment.findGroup()
|
commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2374 fix popup out by one and multiple groups bugs
|
commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2371 add test for toggling ignore gaps with PID...
|
commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
|
commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
|
commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2373 set state of Above PID, By Conservation in...
|
commit | commitdiff | tree |
| 2017-01-05 |
gmungoc | JAL-2371 tests added
|
commit | commitdiff | tree |
| 2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI
|
commit | commitdiff | tree |
| 2016-12-29 |
gmungoc | JAL-2630 first pass groovy colour scheme (with slight...
|
commit | commitdiff | tree |
| 2016-12-23 |
gmungoc | JAL-2360 removed UserDefinedColours.userColourSchemes
|
commit | commitdiff | tree |
| 2016-12-23 |
gmungoc | JAL-2120 JAL-2360 remove obsolete PDBViewer
|
commit | commitdiff | tree |
| 2016-12-22 |
gmungoc | JAL-2360 fix bug that prematurely created a SequenceGroup
|
commit | commitdiff | tree |
| 2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper...
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 set new/loaded colour scheme name correctly
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 simplified code to create a new colour scheme
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 added a table to show score colours
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 ColourMenuHelper now builds and selects items...
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 comment only
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 tidy up, simplify isApplicableTo test
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 no RNAHelices colouring for groups
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2361 Blosum is enabled for peptide
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-1421 add types to Map
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 fix incorrect action on Cancel user defined...
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 tidy spelling and file contents order only
|
commit | commitdiff | tree |
| 2016-12-21 |
gmungoc | JAL-2360 Javadoc and test cases for findAnnotation
|
commit | commitdiff | tree |
| 2016-12-20 |
gmungoc | JAL-2360 testRegisterColourScheme to demonstrate a...
|
commit | commitdiff | tree |
| next |
git://source.jalview.org / jalview.git / search