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JAL-1457 refactoring to explore why '-' appear in annotation rows (see AlignmentAnnot...
2014-02-26 Jim ProcterJAL-1457 refactoring to explore why '-' appear in annotation...
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2014-02-26 Jim Procterfix for JAL-686 - don't trim spaces before creating...
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2014-02-25 Jim ProcterMerge branch 'JAL-1454_patch' into Release_2_8_1_Branch
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2014-02-25 Jim ProcterJAL-1355 typo in key
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2014-02-25 Jim ProcterMerge branch 'JAL-1454_patch' into Release_2_8_1_Branch
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2014-02-25 Jim ProcterJAL-1454 catch exceptions during calculation and report...
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2014-02-25 Jim ProcterJAL-1454 increase max for tqli iterations and throw...
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2014-02-21 Jim ProcterMerge branch 'JAL-1364_patch' into Release_2_8_1_Branch
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2014-02-21 Jim Procterpatch for JAL-1449 - continuance of JAL-1364 - check...
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2014-02-21 Jim ProcterMerge branch 'pathc_JAL-1354' into Release_2_8_1_Branch
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2014-02-21 Jim ProcterJAL-1448 reinstate non-locale sensitive code for reading...
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2014-02-21 Jim ProcterJAL-1354 typo
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2014-02-21 Jim ProcterJAL-1354 use real var-args method signature to avoid...
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2014-02-21 Jim ProcterJAL-1354 quoted format strings are not substituted
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2014-02-20 Jim ProcterMerge branch 'JAL-1447' into Release_2_8_1_Branch
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2014-02-20 Jim ProcterJAL-1447 patch to correctly recognise FASTA files containing '*'
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2014-02-20 Jim Proctertest and data for JAL-1447
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2014-02-20 Jim ProcterJAL-1447 - more flexible testing for file format Identity...
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2014-02-18 Jim ProcterMerge branch 'JAL-1445' into Release_2_8_1_Branch
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2014-02-18 Jim Procterclear out 2.8.0b1 what's new and add JAL-1445 to list...
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2014-02-18 Jim ProcterJAL-1445 basic help docs for feature
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2014-02-18 Jim ProcterJAL-1445 JAL-1354 english strings for select by feature
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2014-02-18 Jim ProcterJAL-1445 (shift+) double click on feature type in desktop...
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2014-02-18 Jim ProcterJAL-1446 use popup event trigger instead of right-click...
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2014-02-17 Jim ProcterJAL-1445 added menu items to select containing/non...
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2014-02-17 Jim ProcterJAL-1445 ported routine for selecting containing/non...
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2014-02-17 Jim ProcterJAL-1445 expose columnSelection setter.
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2014-02-17 Jim ProcterJAL-535 interface for GUI state update methods that...
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2014-02-17 Jim ProcterJAL-1445 groovy script demonstrating how to select...
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2014-02-03 Jim ProcterMerge branch 'try_r20b1_merge' into Release_2_8_1_Branch
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2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1_merge
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2014-02-03 Jim ProcterJAL-1358 JWS-69 add Daniel to the list of Jalview Authors
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2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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2014-02-03 Jim ProcterMerge branch 'JAL-957_jbake' into r281_JAL-957
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2014-01-30 Jim ProcterJAL-1432 'whats new' and release history
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2014-01-29 Jim ProcterJAL-957 reinstate jnetfile parameter
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2014-01-29 Jim ProcterJAL-1432 patch broken comments in css
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2014-01-29 Jim ProcterJAL-1432 natasha's name on applet author list
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2014-01-29 Jim ProcterJAL-1432 updated copyright notices
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2014-01-29 Jim ProcterJAL-1432 AUTHORS file and updated authors properties...
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2014-01-29 Jim ProcterJAL-1432 update dependency and licensing info
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2014-01-29 Jim ProcterJAL-1432 bump version
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2014-01-29 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-29 Jim ProcterJAL-1400 added explanation about signed/unsigned applet...
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2014-01-29 Jim ProcterJAL-970 JAL-1400 fixed layout
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-957 reinstate the PDBfile parameter
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-1400 sign the jnlp for arbitrary memory
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-957 JAL-1400 only sign specific jar artefacts for...
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-957 neater boilerplate link to signed/unsigned...
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2014-01-28 Jim ProcterJAL-957 shorten title for linked applets example
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2014-01-28 Jim ProcterJAL-957 removed cruft on appletParameters page
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-957 make a copy of the applet/Jmol applet jars...
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2014-01-28 Jim ProcterMerge branch 'JAL-1400_sandboxapp' into JAL-957_jbake
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-957 permissions property for example pages (jbake...
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2014-01-28 Jim ProcterJAL-957 unsigned applet demo pages created with jbake
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2014-01-28 Jim ProcterJAL-957 tidier source and ensure permissions is explicitly...
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2014-01-28 Jim ProcterJAL-957 new jbake-generated example pages
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2014-01-28 Jim ProcterJAL-957 instructions on runnning Jbake to regenerate...
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2014-01-28 Jim ProcterJAL-957 standardise formatting for example preamble
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2014-01-28 Jim ProcterJAL-957 standard link to signed/unsigned demo pages...
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2014-01-28 Jim ProcterJAL-957 tidy jbake directory
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2014-01-27 Jim ProcterMerge branch 'JAL-1430_mfa_ext' into Release_2_8_Branch
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2014-01-27 Jim ProcterJAL-1430 mfa added as a known extension for FASTA files
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2014-01-14 Jim ProcterMerge branch 'WIP_fix_JAL-1423' into Release_2_8_Branch
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2014-01-14 Jim ProcterJAL-1400 specify minimum 1.6 JRE
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2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs_r281' into Release_2_8_1_Branch
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2014-01-13 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into JAL-1422_srs_r281
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2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into Release_2_8_Branch
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2014-01-13 Jim ProcterJAL-1422 update any existing configuration to replace...
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2014-01-13 Jim ProcterJAL-1422 change default link to EMBL-EBI Search
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2014-01-13 Jim ProcterJAL-1422 remove SRS and expasy links and replace with...
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2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into Release_2_8_1_Branch
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2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into Release_2_8_Branch
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2014-01-07 Jim ProcterJAL-1423 - console error reporting and graceful handling...
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into testMerge
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim ProcterJAL-1400 update manifest in the JmolApplet jar
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim ProcterJAL-1400 disable 'Permissions' in manifest to see if...
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim Proctersandbox permissions
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2013-11-26 Jim Procternew required parameter for deploying the applet
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim ProcterJAL-1400 add codebase and caller allowable codebase
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2013-11-25 Jim ProcterJAL-1139 add SHA1WithRSA for applet signjar
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25 Jim ProcterJAL-1139 specified SHA1WithRSA for sig algorithm and...
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2013-11-25 Jim Procteradivce from http://ant.apache.org/manual/Tasks/signjar...
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25 Jim ProcterJAL-1139 need to explicitly specify SHA1 for java 6...
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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