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Merge remote-tracking branch
2016-12-05
gmungoc
JAL-2346 JAL-1553 pull-up / push-down of fields and...
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2016-12-05
gmungoc
JAL-1753 JAL-1596 JAL-1933 ensure AWT updates are on...
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2016-12-05
gmungoc
Merge branch 'features/JAL-1933_occupancy' into features...
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2016-12-02
gmungoc
Merge branch 'features/JAL-1933_occupancy' into features...
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2016-12-02
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-12-02
gmungoc
JAL-1933 gap value as description; minor formatting
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2016-12-02
gmungoc
JAL-2346 Javadoc correction
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2016-12-02
gmungoc
Unit tests added, minor refactoring
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2016-12-02
gmungoc
JAL-2346 fixed bug (in code not reached by Jalview)
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2016-12-02
gmungoc
JAL-2346 unit test for annotation drop-down list builder
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2016-12-01
gmungoc
JAL-2346 unused method removed
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2016-12-01
gmungoc
JAL-2346 save annotation id instead of label with annotation...
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2016-12-01
gmungoc
JAL-2346 restore choice of annotation for colouring...
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2016-11-30
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-30
gmungoc
JAL-2344 use ".cif" for saved mmCIF file (and refactor...
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2016-11-30
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-29
gmungoc
JAL-2329 tests to confirm behaviour of Java extended...
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2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-11-29
gmungoc
JAL-2344 corrected conversion of Type enum to FileFormat
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2016-11-29
gmungoc
JAL-2344 FileFormat.isStructureFile replaces
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2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-28
gmungoc
JAL-2344 added FileFormatI.isStructureFile()
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2016-11-28
gmungoc
JAL-2345 cache generated ImageIcon per file path
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2016-11-25
gmungoc
JAL-2344 dynamically determine recognised extensions...
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-25
gmungoc
JAL-2344 override to ignore (obsolete?) JalviewFileView
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2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
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2016-11-25
gmungoc
JAL-2344 correct roundtrip test to exclude Jalview...
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2016-11-24
gmungoc
Distinguish text-only output formats and others (.jar...
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2016-11-24
gmungoc
Further tweaks to get tests passing
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2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
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2016-11-23
gmungoc
JAL-1738 Spanish versions added
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2016-11-23
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-22
gmungoc
JAL-2337 fix: only adjust once for scroll offset
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2016-11-22
gmungoc
JAL-1919 JAL-2177 handle empty pdbentries list correctly
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2016-11-22
gmungoc
JAL-2277 refactored AlignmentPanel.printUnwrapped to...
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2016-11-21
gmungoc
JAL-2333 test beefed up with gaps
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2016-11-21
gmungoc
JAL-2333 corrected select columns with 'contact' feature
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2016-11-21
gmungoc
Merge branch 'develop' into bug/JAL-2323disulfideOverview
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2016-11-18
gmungoc
JAL-98 with the two types missing from last commit...
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2016-11-17
gmungoc
JAL-2323 revert to thread-safe iteration over array...
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2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
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2016-11-17
gmungoc
JAL-98 javadoc, third party acknowledgements (and very...
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2016-11-17
gmungoc
JAL-2327 disulfide bond abstracted to SequenceFeature...
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2016-11-17
gmungoc
JAL-2327 add isContactFeature
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2016-11-16
gmungoc
JAL-2296 unit test for reading Chimera attributes to...
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2016-11-16
gmungoc
JAL-2323 render disulfide bond correctly on overview...
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2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-16
gmungoc
JAL-2324 fix and tests for comparison of Float.NaN...
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2016-11-16
gmungoc
JAL-2319 corrected reporting of SIFTS mapping
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2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-16
gmungoc
JAL-2296 don't copy attribute with value False
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2016-11-16
gmungoc
JAL-2295 don't exclude RESNUM from transfer to Chimera
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2016-11-14
gmungoc
JAL-2296 new code and refactoring for 'copy Chimera...
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2016-11-14
gmungoc
JAL-2295 don't copy 'Chimera' features back to Chimera
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2016-11-14
gmungoc
JAL-2296 parse Chimera atomspec to AtomSpec
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2016-11-14
gmungoc
JAL-2296 report whether SequenceFeature actually added...
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2016-11-14
gmungoc
JAL-2295 JAL-2296 skeleton 'attributes to features...
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2016-11-11
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-11
gmungoc
JAL-2295 tests now 'network-free' with local PDB and...
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2016-11-11
gmungoc
JAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
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2016-11-11
gmungoc
JAL-2295 improved integrity of 'isFinishedInit' flag
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2016-11-11
gmungoc
JAL-1270 corrected command-line args
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2016-11-11
gmungoc
JAL-2295 set finishedInit to false before checking...
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2016-11-11
gmungoc
JAL-2295 test that verifies transfer of features to...
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2016-11-11
gmungoc
JAL-2295 sorted properties for readability
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2016-11-11
gmungoc
JAL-2295 (optionally) return Chimera command reply
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2016-11-11
gmungoc
JAL-2295 correct test for Float.isNaN(score) !
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2016-11-10
gmungoc
JAL-2295 additional tests, stronger sanitisation of...
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2016-11-10
gmungoc
JAL-2320 thread to close Chimera viewer panel if Chimera...
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2016-11-10
gmungoc
JAL-2320 added getViewer() method to return Chimera...
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2016-11-09
gmungoc
JAL-2295 set attributes commands include feature value...
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2016-11-09
gmungoc
JAL-2295 single constant for "RESNUM" feature name
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2016-11-08
gmungoc
JAL-2295 JAL-1596 method to pass a command script file...
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2016-11-08
gmungoc
JAL-2301 corrected search example to match AA properties...
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2016-11-08
gmungoc
JAL-2301 made T hydrophobic as per the cited conservation...
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2016-11-08
gmungoc
JAL-1961 added link to GFF3 format as well as GFF2
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2016-11-08
gmungoc
JAL-2295 feature and colour commands refactored to...
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2016-11-08
gmungoc
JAL-2295 method added to return a compact mapped range...
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2016-11-08
gmungoc
JAL-2295 extracted AtomSpecModel for reuse in Chimera...
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2016-11-08
gmungoc
JAL-2295 make RangeComparator a top level class for...
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2016-11-07
gmungoc
Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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2016-11-07
gmungoc
JAL-1270 renamed helper method so it is not run as...
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2016-11-07
gmungoc
JAL-2272 another test case
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2016-11-07
gmungoc
JAL-1805 groups=Functional added where missing
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2016-11-07
gmungoc
JAL-2272 unit tests added for Platform.isControlDown
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2016-11-07
gmungoc
JAL-2318 updated help text
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2016-11-07
gmungoc
JAL-2282 show url links that need checked; remove ...
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2016-11-07
gmungoc
JAL-2295 handle no progress bar message properly
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2016-11-07
gmungoc
JAL-2295 small tidy of javadoc only
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2016-11-07
gmungoc
JAL-2295 (unoptimised) write Jalview features as Chimera...
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2016-11-04
gmungoc
JAL-2272 right mouse button on Mac is not Cmd equivalent!
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2016-11-04
gmungoc
JAL-966 JAL-1854 removed redundant methods / modifiers...
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2016-11-04
gmungoc
JAL-2302 unit tests added for Finder
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2016-11-03
gmungoc
JAL-2310 don't double-count sequence matches; code...
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2016-11-03
gmungoc
JAL-2281 test added to show searchRefs is now not case...
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2016-11-03
gmungoc
JAL-2295 step 1 new menu item to transfer Jalview attributes...
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2016-11-02
gmungoc
JAL-2301 table formatted, and corrected to match the...
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2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
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