| 2009-10-30 |
jprocter | na pdb: highlight any part of a residue, not just the...
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commit | commitdiff | tree |
| 2009-10-30 |
jprocter | na pdb: recognise NA residue names
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commit | commitdiff | tree |
| 2009-10-30 |
jprocter | na pdb: detect P backbone
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commit | commitdiff | tree |
| 2009-10-29 |
jprocter | add JGoogleAnalytics webstart resource
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commit | commitdiff | tree |
| 2009-10-27 |
jprocter | todo
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commit | commitdiff | tree |
| 2009-10-27 |
jprocter | typo
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commit | commitdiff | tree |
| 2009-10-27 |
jprocter | finish privacy statement
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commit | commitdiff | tree |
| 2009-10-27 |
jprocter | synchronized documentation between development and...
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commit | commitdiff | tree |
| 2009-10-27 |
jprocter | fix null pointer exception in redraw for short sequence...
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commit | commitdiff | tree |
| 2009-10-14 |
jprocter | quick fix for nullpointer in column selection when...
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commit | commitdiff | tree |
| 2009-10-14 |
jprocter | fix from acresso for black bg in inner panel
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | fix for pfam files with empty annotation or sequence...
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | prototype Java log window and sticky configuration
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | desktop window scaled to current window geometry, prototype...
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | prompt user to enable usage stats
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | added preferences for usage stats, questionnaire check...
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | use Pdb database source for fetching and warn user...
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | safer OOM handling when importing from XML
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | enact on a boolean configuration option, prompting...
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | fix potential race condition
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | documented privacy settings, versioncheck controlled...
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commit | commitdiff | tree |
| 2009-10-12 |
jprocter | ensure id string doesn't get set to the empty string...
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commit | commitdiff | tree |
| 2009-10-05 |
jprocter | immediately show memory usage
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commit | commitdiff | tree |
| 2009-09-22 |
jprocter | allow the display character below a graph to be explicitly...
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commit | commitdiff | tree |
| 2009-09-10 |
jprocter | fix null pointer exception when using blosum colourscheme
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commit | commitdiff | tree |
| 2009-09-03 |
jprocter | allow middle-button drag to change height of annotation...
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commit | commitdiff | tree |
| 2009-08-25 |
jprocter | jga browser string: java/version (arch; os version)
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commit | commitdiff | tree |
| 2009-08-24 |
jprocter | modified JGA module to report java+version as user...
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | 1.1 compatibility
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | render sequence logo over consensus histogram
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | single-click highlights, double click selectes th associated...
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | group consensus/conservation calculated from start...
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | viewport setting for displaying sequence logos
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | reversed order of addition of group consensus and conservation
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | prototype make groups from selection function and shift...
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | prototype make groups from selection function
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | new sortbyPID for specific start/end region
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | race condition null pointer bugfix
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | bugfix
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | todo for 2.5
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | null pointer exception bug fix
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | commented debug lines indicating calculation progress
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | start/stop for per-group consensus calculation
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | store symbol profile and extract it for display
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | pir format ambiguity and todo regarding 'format override...
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | basic implementation of profile display and todos
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | todo
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | routines for creating groups over an alignment
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | asparagine is polar but not charged
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commit | commitdiff | tree |
| 2009-08-03 |
jprocter | fix feature creation for selected region beyond end...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | explicitly grab all permissions for application execution...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | update annotation when group state is changed
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | show group annotation menu entries
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | colour by label prototype flag
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | catch null pointer exception in headless context
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | get consensus sequence and set ignore gaps flag for...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | annotation update method synchronises group annotation
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | headless warning messages, prototype group annotation...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | refactored conservation thread, added showgroupannotation...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | conservation thread refactored from AlignViewport
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | feature colour by label flag/style
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | headless test
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | todo
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | implement new insert annotation row method and ensure...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | insert annotation at specific position
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | optional sequencegroup ref for annotation row
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | sequence groups carry their own conservation and consensus...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | complete alignment annotation row procedure
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commit | commitdiff | tree |
| 2009-06-24 |
jprocter | ensure annotation row height is honoured for new VAMSAS...
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commit | commitdiff | tree |
| 2009-06-24 |
jprocter | all alignment sequences associated with a dataset sequence...
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commit | commitdiff | tree |
| 2009-06-24 |
jprocter | can use whitespace, comma or semicolon to separate IDs
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commit | commitdiff | tree |
| 2009-06-24 |
jprocter | fix to cope with EMBL records containing a CDS fragment...
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commit | commitdiff | tree |
| 2009-06-24 |
jprocter | take the average of the three consecutive codon sites...
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | implementation error warning todo
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | debug and cyclefix for dbrefs with embedded sequences
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | javadoc and datastoreitem registry support for binding...
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | more efficient synchronized methods
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | bugfix mapped reference transfer and made picr ID retrieval...
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | selection handler and sender bugfix
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | todo
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | selections sent when mouse is released (drags on ID...
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | progress bars (still need to be threaded properly)...
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | smoother scroll-to-position action
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | drag'n'drop a URL on to an alignment
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | parent db references and mappings added to retrieved...
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | intersect did not intersect (used in selection listener)
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | regex validator for uniprot
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | usepicr config property
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | debug
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | debug comments
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | new coverage comparison - no test case in main method yet
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commit | commitdiff | tree |
| 2009-06-12 |
jprocter | updated Iclientfactory interface, XMl viewer tests...
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commit | commitdiff | tree |
| 2009-06-12 |
jprocter | synching of all db references and sequence features
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commit | commitdiff | tree |
| 2009-06-12 |
jprocter | prevent dbref->map->to->datasetsequence->dbref-> type...
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commit | commitdiff | tree |
| 2009-06-12 |
jprocter | reinstate links on features
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commit | commitdiff | tree |
| 2009-06-12 |
jprocter | datastore registration and class cast exception fix
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commit | commitdiff | tree |
| 2009-06-12 |
jprocter | prevent and keep track of which objects handling element...
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commit | commitdiff | tree |
| 2009-06-12 |
jprocter | numerous bugfixs (tree panel synchs) and DatastoreRegistry...
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commit | commitdiff | tree |
| 2009-06-12 |
jprocter | methods for importing anonymous vamsas documents into...
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commit | commitdiff | tree |
| 2009-06-12 |
jprocter | nullpointer bugfix (possibly not needed - was an error...
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commit | commitdiff | tree |
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