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JAL-2034 make Escape/select/deselect operations not trigger an overview repaint ...
2015-06-28
Jim Procter
JAL-1421 todo: remove java.util.Vector from jalview...
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2015-06-28
Jim Procter
JAL-1705 refactored code for dbsource reggae validator...
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2015-06-28
Jim Procter
JAL-1705 javadoc
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2015-06-28
Jim Procter
JAL-1705 renamed test for refactored class
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2015-06-28
Jim Procter
JAL-1705 concrete classes for different ENSEMBL sequence...
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2015-06-28
Jim Procter
JAL-1705 renamed SeqFetcherTest to EnsemblSeqProxyTest
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2015-06-26
Jim Procter
JAL-1705 basic client & tests for rest.ensembl.org...
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2015-06-26
Jim Procter
JAL-1705 - allow a FileParse to be constructed directly...
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2015-06-25
Jim Procter
JAL-1794 simple file server class - configured for...
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2015-06-25
Jim Procter
Merge branch 'develop' into features/JAL-653_JAL-1766_htslib...
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2015-06-25
Jim Procter
JAL-1691 avoid NPE when original split frame has been...
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2015-06-25
Jim Procter
JAL-1780 JAL-653 JAL-1892 brackets in wrong place broke...
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2015-06-25
Jim Procter
Merge branch 'develop' into features/JAL-653_JAL-1766_htslib...
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2015-06-24
Jim Procter
Merge branch 'features/JAL-1370_patchshowunconserved...
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2015-06-24
Jim Procter
JAL-1790 fix: javac.source=1.7 and javac.target=1.7...
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2015-06-24
Jim Procter
JAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation
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2015-06-24
Jim Procter
Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
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2015-06-24
Jim Procter
Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
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2015-06-24
Jim Procter
JAL-1782 refactored JAL-1766 JAL-653 tests to TestNG
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2015-06-23
Jim Procter
JAL-1780 JAL-653 jim forgot to put the conditional...
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2015-06-23
Jim Procter
Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
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2015-06-23
Jim Procter
JAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refactored...
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2015-06-22
Jim Procter
JAL-1270 fix logic in stockholm test allowing annotation...
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2015-06-22
Jim Procter
JAL-653 JAL-1780 JAL-1140 added RNAML example alignment...
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2015-06-22
Jim Procter
JAL-653 JAL-1780 dropped unnecessary refs
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2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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2015-06-22
Jim Procter
JAL-653 JAL-1780 reorder imports
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2015-06-19
Jim Procter
JAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfile...
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2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
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2015-06-19
Jim Procter
JAL-653 JAL-1780 minimise call rate now av.hasHiddenRows...
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2015-06-19
Jim Procter
JAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
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2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
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2015-06-18
Jim Procter
JAL-653 patch broken test code - test still not passing
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2015-06-18
Jim Procter
JAL-653 JAL-1780 JAL-1543 javadoc and comment about...
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2015-06-18
Jim Procter
JAL-653 JAL-1780 javadoc for FeatureRenderer prior...
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2015-06-18
Jim Procter
JAL-1780 JAL-653 moved AlignExportSettings reference...
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2015-06-17
Jim Procter
JAL-1784 minimise data duplication, and report out...
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2015-06-17
Jim Procter
JAL-1784 refactor parse method to directly parse FileParser...
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2015-06-17
Jim Procter
Merge branch 'features/JAL-653_gffalignments' into...
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2015-06-17
Jim Procter
Merge branch 'features/JAL-653_gffalignments' into...
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2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
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2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-1780_export...
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2015-06-17
Jim Procter
JAL-1783 add java 1.7 and 1.8 class numbers
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2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-1780_export...
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2015-06-15
Jim Procter
Merge branch 'bug/JAL-1775' into develop
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2015-06-15
Jim Procter
JAL-1665 patch for regression: failing jalview.ws.jabaws...
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2015-06-15
Jim Procter
JAL-1775 patch for regression from Anne Menard’s pseudo...
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2015-06-15
Jim Procter
Merge branch 'bug/JAL-1775' into develop
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2015-06-15
Jim Procter
JAL-1775 patch regression bug when displayChar is null...
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2015-06-15
Jim Procter
Merge branch 'bug/JAL-1775' into develop
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2015-06-15
Jim Procter
fix for JAL-1775 (and reorganise imports)
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2015-06-15
Jim Procter
Merge branch 'bug/JAL-1775' into develop
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2015-06-15
Jim Procter
JAL-1775 test demonstrating bug
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2015-06-15
Jim Procter
JAL-1775 FileLoader javadoc
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2015-06-15
Jim Procter
JAL-1775 fix regression from commit 70f9c4700f20a8fa57ed7eb9...
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2015-06-15
Jim Procter
Merge branch 'develop' into bug/JAL-1775
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2015-06-15
Jim Procter
JAL-1775 fix broken test due to missing file (RF0031_unfolded).
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2015-06-12
Jim Procter
JAL-1766 update HTSJDK to Version 1.133
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2015-06-11
Jim Procter
JAL-653 tidy comments
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2015-06-10
Jim Procter
JAL-1764 add structure view type attribute to project...
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2015-06-08
Jim Procter
JAL-1766 basic test to retrieve named sequences from...
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2015-06-08
Jim Procter
JAL-1766 test and buggy implementation of fasta index...
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2015-06-08
Jim Procter
JAL-1766 added a snapshot build of the htsjdk
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2015-06-07
Jim Procter
JAL-429 remove pointless code from phylip parser
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2015-06-07
Jim Procter
JAL-653 test for GFF file recognition and alignment...
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2015-06-07
Jim Procter
JAL-653 GFF recognition for identifyFile and format...
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2015-06-07
Jim Procter
JAL-653 basic GFF3 alignment import wrapper class
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2015-06-06
Jim Procter
JAL-653 make sure dummy sequences created during GFF...
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2015-06-06
Jim Procter
JAL-653 first stab at parsing GFF3 pragmas to support...
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2015-06-06
Jim Procter
JAL-653 gff version number field
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2015-06-06
Jim Procter
JAL-653 test and testdata for importing GFF3 file with...
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2015-06-06
Jim Procter
JAL-653 missing imports after rebase
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2015-06-06
Jim Procter
JAL-653 test for SequenceDummy methods
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2015-06-06
Jim Procter
JAL-653 allow a dummy sequence to take on attributes...
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2015-06-05
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
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2015-06-05
Jim Procter
JAL-653 abstract sequence model to support file backed...
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2015-06-01
Jim Procter
JAL-1370 group and alignment reference sequences are...
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2015-05-29
Jim Procter
Merge branch 'JAL-1755_npe_groupconsensus' into develop
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2015-05-29
Jim Procter
JAL-1755 fix for NPE when setting up temporary variables
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2015-05-07
Jim Procter
JAL-1731 fix JPred4 citation in legacy client code
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2015-05-07
Jim Procter
JAL-1551 formatting
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2015-05-07
Jim Procter
JAL-1601 migrated the JABAWS 2.1 jpred burial representation...
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2015-04-27
Jim Procter
JAL-1645 Release_2_9 branch build tag
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2014-10-23
Jim Procter
Merge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch
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2014-10-23
Jim Procter
Merge branch 'hotfix/JAL-1521' into develop
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